Wall clock time and date at job start Tue Mar 31 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29400 * 125.58414 * 2 1 4 4 N 1.40175 * 108.13522 * 180.13487 * 3 2 1 5 5 C 1.46500 * 126.34591 * 179.87504 * 4 3 2 6 6 C 1.50698 * 109.47163 * 269.68934 * 5 4 3 7 7 O 1.21277 * 120.00005 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99818 * 179.72468 * 6 5 4 9 9 C 1.46499 * 119.99794 * 180.27167 * 8 6 5 10 10 H 1.08992 * 109.46417 * 35.00225 * 9 8 6 11 11 C 1.53040 * 109.46366 * 275.02631 * 9 8 6 12 12 C 1.53192 * 109.31648 * 178.61284 * 11 9 8 13 13 N 1.46924 * 108.77121 * 54.64054 * 12 11 9 14 14 C 1.36934 * 120.63157 * 126.37098 * 13 12 11 15 15 H 1.07995 * 120.00014 * 331.82813 * 14 13 12 16 16 C 1.38812 * 120.00087 * 151.82950 * 14 13 12 17 17 N 1.31622 * 120.00280 * 343.07853 * 16 14 13 18 18 Si 1.86801 * 120.00055 * 163.07946 * 16 14 13 19 19 H 1.48500 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47066 * 120.00085 * 18 16 14 21 21 H 1.48498 * 109.47030 * 239.99749 * 18 16 14 22 22 C 1.46930 * 118.73947 * 306.38569 * 13 12 11 23 23 C 1.53048 * 109.45922 * 154.97563 * 9 8 6 24 24 H 1.08998 * 109.49487 * 301.33395 * 23 9 8 25 25 O 1.42891 * 109.49739 * 61.43418 * 23 9 8 26 26 C 1.34937 * 107.30197 * 359.60816 * 4 3 2 27 27 O 1.21817 * 126.30174 * 180.22071 * 26 4 3 28 28 N 1.34812 * 107.39593 * 0.23198 * 26 4 3 29 29 C 1.46501 * 125.83455 * 179.97438 * 28 26 4 30 30 H 1.08995 * 109.47420 * 270.28970 * 1 2 3 31 31 H 1.08999 * 109.47139 * 30.29686 * 1 2 3 32 32 H 1.09001 * 109.46893 * 150.28988 * 1 2 3 33 33 H 1.08997 * 109.47409 * 149.68744 * 5 4 3 34 34 H 1.09004 * 109.47014 * 29.68723 * 5 4 3 35 35 H 0.96997 * 120.00619 * 0.27400 * 8 6 5 36 36 H 1.09000 * 109.49723 * 298.57181 * 11 9 8 37 37 H 1.09005 * 109.49591 * 58.66317 * 11 9 8 38 38 H 1.09006 * 109.58588 * 174.42329 * 12 11 9 39 39 H 1.08992 * 109.58934 * 294.85143 * 12 11 9 40 40 H 0.97001 * 120.00225 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.58753 * 173.39868 * 22 13 12 42 42 H 1.09001 * 109.58746 * 293.82662 * 22 13 12 43 43 H 0.96697 * 113.99964 * 179.97438 * 25 23 9 44 44 H 1.09000 * 109.47042 * 0.02562 * 29 28 26 45 45 H 1.08993 * 109.47287 * 120.02037 * 29 28 26 46 46 H 1.08995 * 109.47342 * 240.02449 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5973 0.6320 -0.0031 5 6 4.7794 1.4974 -0.0068 6 6 5.1856 1.7869 -1.4288 7 8 4.5506 1.3163 -2.3486 8 7 6.2517 2.5729 -1.6784 9 6 6.6430 2.8591 -3.0608 10 1 5.7511 2.9326 -3.6829 11 6 7.5365 1.7312 -3.5818 12 6 7.9154 2.0166 -5.0385 13 7 8.5227 3.3522 -5.1160 14 6 9.7517 3.5272 -5.6939 15 1 10.4719 2.7225 -5.6858 16 6 10.0720 4.7391 -6.2903 17 7 9.1189 5.5920 -6.6010 18 14 11.8558 5.1596 -6.6520 19 1 12.7273 4.0413 -6.2103 20 1 12.0278 5.3739 -8.1114 21 1 12.2303 6.3976 -5.9224 22 6 7.7865 4.4964 -4.5614 23 6 7.4094 4.1829 -3.1100 24 1 6.7808 4.9820 -2.7170 25 8 8.5960 4.0767 -2.3209 26 6 3.5938 -0.7173 0.0038 27 8 4.5737 -1.4410 0.0075 28 7 2.3063 -1.1171 0.0058 29 6 1.8394 -2.5057 0.0124 30 1 -0.3634 0.0052 1.0276 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3633 -0.8926 -0.5093 33 1 5.5979 0.9966 0.5101 34 1 4.5465 2.4328 0.5021 35 1 6.7598 2.9490 -0.9427 36 1 8.4404 1.6735 -2.9754 37 1 6.9985 0.7849 -3.5246 38 1 8.6303 1.2695 -5.3832 39 1 7.0216 1.9849 -5.6614 40 1 9.3427 6.4390 -7.0174 41 1 8.4164 5.3854 -4.5914 42 1 6.8822 4.6668 -5.1455 43 1 9.1323 4.8812 -2.3069 44 1 2.6977 -3.1776 0.0160 45 1 1.2364 -2.6820 0.9030 46 1 1.2369 -2.6907 -0.8769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090768857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:00 Heat of formation + Delta-G solvation = -8.310404 kcal Electronic energy + Delta-G solvation = -30244.519733 eV Core-core repulsion = 25979.542332 eV Total energy + Delta-G solvation = -4264.977401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.61394 -39.76859 -37.97419 -37.46591 -35.54913 -34.79122 -34.29157 -32.57596 -32.09747 -30.75294 -29.32290 -29.03585 -27.63973 -26.62375 -24.86905 -22.55321 -22.12660 -21.64229 -21.21327 -20.25650 -19.41679 -17.75980 -17.58803 -17.17256 -16.46670 -16.32601 -15.92613 -15.75971 -15.37584 -15.04777 -14.73219 -14.27088 -14.21306 -13.91994 -13.84988 -13.76277 -13.47946 -13.28902 -13.15864 -12.96180 -12.82292 -12.36423 -12.12135 -12.06796 -12.01428 -11.96232 -11.26310 -11.14292 -10.81109 -10.61205 -10.55472 -10.47183 -10.40872 -10.16205 -10.03292 -9.77699 -9.58503 -9.18576 -8.71332 -8.61813 -8.50129 -6.67628 -5.81477 -3.22397 1.49629 1.71545 2.52855 2.68563 2.77459 3.34661 3.39734 3.44294 3.47360 4.09262 4.31141 4.48121 4.64535 4.71593 4.78425 4.83757 4.89365 4.94592 4.97636 5.15377 5.30229 5.31095 5.38378 5.40647 5.46894 5.58790 5.63581 5.88785 5.96516 6.04278 6.22193 6.27721 6.31931 6.48265 6.57748 6.81419 6.85697 6.99268 7.17829 7.42486 7.45079 7.67710 7.79059 7.89879 8.23886 8.35472 8.43197 9.18147 9.81066 10.38288 11.27394 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028768 B = 0.002301 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.058282 B =12163.537865 C =12305.350916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.273 3.727 3 N -0.271 5.271 4 N -0.435 5.435 5 C 0.143 3.857 6 C 0.493 3.507 7 O -0.530 6.530 8 N -0.714 5.714 9 C 0.164 3.836 10 H 0.089 0.911 11 C -0.136 4.136 12 C 0.148 3.852 13 N -0.583 5.583 14 C -0.241 4.241 15 H 0.066 0.934 16 C -0.002 4.002 17 N -0.908 5.908 18 Si 0.903 3.097 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.146 3.854 23 C 0.074 3.926 24 H 0.044 0.956 25 O -0.559 6.559 26 C 0.654 3.346 27 O -0.552 6.552 28 N -0.558 5.558 29 C 0.096 3.904 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.403 0.597 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.019 0.981 40 H 0.253 0.747 41 H 0.096 0.904 42 H 0.027 0.973 43 H 0.375 0.625 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.705 -8.696 17.979 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.005 4.005 3 N -0.094 5.094 4 N -0.255 5.255 5 C 0.017 3.983 6 C 0.276 3.724 7 O -0.406 6.406 8 N -0.366 5.366 9 C 0.061 3.939 10 H 0.107 0.893 11 C -0.177 4.177 12 C 0.021 3.979 13 N -0.305 5.305 14 C -0.371 4.371 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.553 5.553 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.018 3.982 23 C 0.012 3.988 24 H 0.062 0.938 25 O -0.365 6.365 26 C 0.354 3.646 27 O -0.425 6.425 28 N -0.287 5.287 29 C -0.046 4.046 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.114 0.886 42 H 0.045 0.955 43 H 0.222 0.778 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.557 -8.980 17.304 26.236 hybrid contribution 1.384 0.343 -0.099 1.430 sum -16.173 -8.637 17.205 25.143 Atomic orbital electron populations 1.20410 0.82883 1.05371 1.04634 1.24164 0.96470 0.81946 0.97964 1.76968 0.87468 1.21050 1.23913 1.48155 1.03696 1.04727 1.68876 1.21246 0.84944 0.95980 0.96114 1.20826 0.80963 0.79298 0.91271 1.90725 1.53410 1.50572 1.45878 1.46123 1.29879 1.50496 1.10080 1.21016 0.96952 0.94784 0.81179 0.89265 1.22301 0.99269 0.96471 0.99625 1.20892 0.96157 0.88725 0.92077 1.43890 1.18964 1.01271 1.66393 1.19229 0.89610 0.99389 1.28831 0.91629 1.25034 0.97532 0.99052 0.98358 1.70029 1.30303 1.10217 1.44739 0.86207 0.84940 0.78032 0.77528 1.20263 1.21816 1.21628 1.21440 0.96403 0.93053 0.87267 1.22833 0.85838 0.94536 0.95547 0.93823 1.86345 1.36908 1.41941 1.71288 1.16616 0.83630 0.83261 0.81134 1.91089 1.34771 1.57936 1.58721 1.45781 1.06619 1.08299 1.68047 1.21815 1.01838 0.77990 1.02939 0.88823 0.88242 0.89389 0.85852 0.85829 0.76286 0.91110 0.92972 0.92419 0.96306 0.93707 0.88605 0.95468 0.77800 0.88674 0.90369 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.20 36.01 0.37 0.07 16 2 C 0.27 2.63 7.98 -154.16 -1.23 1.40 16 3 N -0.27 -3.44 12.53 32.97 0.41 -3.02 16 4 N -0.44 -6.19 3.11 -66.31 -0.21 -6.39 16 5 C 0.14 1.73 6.87 -5.19 -0.04 1.69 16 6 C 0.49 7.84 7.86 -10.99 -0.09 7.75 16 7 O -0.53 -10.80 16.09 5.56 0.09 -10.71 16 8 N -0.71 -10.71 5.05 -53.77 -0.27 -10.98 16 9 C 0.16 3.00 2.20 -67.89 -0.15 2.85 16 10 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 11 C -0.14 -2.72 5.51 -26.61 -0.15 -2.87 16 12 C 0.15 3.33 6.52 -3.71 -0.02 3.31 16 13 N -0.58 -14.59 2.93 -172.32 -0.51 -15.09 16 14 C -0.24 -6.58 9.58 -15.06 -0.14 -6.73 16 15 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 16 C 0.00 -0.06 4.92 -17.43 -0.09 -0.14 16 17 N -0.91 -25.84 11.20 55.49 0.62 -25.22 16 18 Si 0.90 21.52 29.59 -169.99 -5.03 16.50 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.15 3.34 4.95 -3.71 -0.02 3.32 16 23 C 0.07 1.34 3.38 -26.60 -0.09 1.25 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 O -0.56 -9.79 12.08 -35.23 -0.43 -10.22 16 26 C 0.65 9.93 8.60 -86.74 -0.75 9.19 16 27 O -0.55 -10.06 17.48 5.08 0.09 -9.97 16 28 N -0.56 -6.08 3.14 -125.41 -0.39 -6.48 16 29 C 0.10 0.60 10.65 59.85 0.64 1.24 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.18 7.85 -51.93 -0.41 -0.23 16 33 H 0.12 1.29 8.11 -51.93 -0.42 0.87 16 34 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 4.99 8.25 -40.82 -0.34 4.65 16 36 H 0.07 1.47 7.61 -51.93 -0.40 1.07 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.10 2.39 6.06 -51.93 -0.31 2.08 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.38 5.68 9.08 45.56 0.41 6.09 16 44 H 0.09 0.71 7.73 -51.93 -0.40 0.31 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -38.68 383.43 -7.62 -46.29 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.02 Total: 7.18 kcal Atomic # 6 Polarization: 24.09 SS G_CDS: -1.75 Total: 22.34 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -0.34 Total: -67.19 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.25 Total: -30.90 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.68 -7.62 -46.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.984 kcal (2) G-P(sol) polarization free energy of solvation -38.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds