Wall clock time and date at job start Tue Mar 31 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29400 * 125.58414 * 2 1 4 4 N 1.40175 * 108.13522 * 180.13487 * 3 2 1 5 5 C 1.46500 * 126.34591 * 179.87504 * 4 3 2 6 6 C 1.50698 * 109.47163 * 269.68934 * 5 4 3 7 7 O 1.21277 * 120.00005 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99818 * 179.72468 * 6 5 4 9 9 C 1.46499 * 119.99794 * 180.27167 * 8 6 5 10 10 H 1.08992 * 109.46417 * 35.00225 * 9 8 6 11 11 C 1.53040 * 109.46366 * 275.02631 * 9 8 6 12 12 C 1.53192 * 109.31648 * 178.61284 * 11 9 8 13 13 N 1.46924 * 108.77121 * 54.64054 * 12 11 9 14 14 C 1.36934 * 120.63157 * 126.37098 * 13 12 11 15 15 H 1.07995 * 120.00014 * 331.82813 * 14 13 12 16 16 C 1.38812 * 120.00087 * 151.82950 * 14 13 12 17 17 N 1.31622 * 120.00280 * 343.07853 * 16 14 13 18 18 Si 1.86801 * 120.00055 * 163.07946 * 16 14 13 19 19 H 1.48500 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47066 * 120.00085 * 18 16 14 21 21 H 1.48498 * 109.47030 * 239.99749 * 18 16 14 22 22 C 1.46930 * 118.73947 * 306.38569 * 13 12 11 23 23 C 1.53048 * 109.45922 * 154.97563 * 9 8 6 24 24 H 1.08998 * 109.49487 * 301.33395 * 23 9 8 25 25 O 1.42891 * 109.49739 * 61.43418 * 23 9 8 26 26 C 1.34937 * 107.30197 * 359.60816 * 4 3 2 27 27 O 1.21817 * 126.30174 * 180.22071 * 26 4 3 28 28 N 1.34812 * 107.39593 * 0.23198 * 26 4 3 29 29 C 1.46501 * 125.83455 * 179.97438 * 28 26 4 30 30 H 1.08995 * 109.47420 * 270.28970 * 1 2 3 31 31 H 1.08999 * 109.47139 * 30.29686 * 1 2 3 32 32 H 1.09001 * 109.46893 * 150.28988 * 1 2 3 33 33 H 1.08997 * 109.47409 * 149.68744 * 5 4 3 34 34 H 1.09004 * 109.47014 * 29.68723 * 5 4 3 35 35 H 0.96997 * 120.00619 * 0.27400 * 8 6 5 36 36 H 1.09000 * 109.49723 * 298.57181 * 11 9 8 37 37 H 1.09005 * 109.49591 * 58.66317 * 11 9 8 38 38 H 1.09006 * 109.58588 * 174.42329 * 12 11 9 39 39 H 1.08992 * 109.58934 * 294.85143 * 12 11 9 40 40 H 0.97001 * 120.00225 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.58753 * 173.39868 * 22 13 12 42 42 H 1.09001 * 109.58746 * 293.82662 * 22 13 12 43 43 H 0.96697 * 113.99964 * 179.97438 * 25 23 9 44 44 H 1.09000 * 109.47042 * 0.02562 * 29 28 26 45 45 H 1.08993 * 109.47287 * 120.02037 * 29 28 26 46 46 H 1.08995 * 109.47342 * 240.02449 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0524 0.0000 4 7 3.5973 0.6320 -0.0031 5 6 4.7794 1.4974 -0.0068 6 6 5.1856 1.7869 -1.4288 7 8 4.5506 1.3163 -2.3486 8 7 6.2517 2.5729 -1.6784 9 6 6.6430 2.8591 -3.0608 10 1 5.7511 2.9326 -3.6829 11 6 7.5365 1.7312 -3.5818 12 6 7.9154 2.0166 -5.0385 13 7 8.5227 3.3522 -5.1160 14 6 9.7517 3.5272 -5.6939 15 1 10.4719 2.7225 -5.6858 16 6 10.0720 4.7391 -6.2903 17 7 9.1189 5.5920 -6.6010 18 14 11.8558 5.1596 -6.6520 19 1 12.7273 4.0413 -6.2103 20 1 12.0278 5.3739 -8.1114 21 1 12.2303 6.3976 -5.9224 22 6 7.7865 4.4964 -4.5614 23 6 7.4094 4.1829 -3.1100 24 1 6.7808 4.9820 -2.7170 25 8 8.5960 4.0767 -2.3209 26 6 3.5938 -0.7173 0.0038 27 8 4.5737 -1.4410 0.0075 28 7 2.3063 -1.1171 0.0058 29 6 1.8394 -2.5057 0.0124 30 1 -0.3634 0.0052 1.0276 31 1 -0.3633 0.8873 -0.5184 32 1 -0.3633 -0.8926 -0.5093 33 1 5.5979 0.9966 0.5101 34 1 4.5465 2.4328 0.5021 35 1 6.7598 2.9490 -0.9427 36 1 8.4404 1.6735 -2.9754 37 1 6.9985 0.7849 -3.5246 38 1 8.6303 1.2695 -5.3832 39 1 7.0216 1.9849 -5.6614 40 1 9.3427 6.4390 -7.0174 41 1 8.4164 5.3854 -4.5914 42 1 6.8822 4.6668 -5.1455 43 1 9.1323 4.8812 -2.3069 44 1 2.6977 -3.1776 0.0160 45 1 1.2364 -2.6820 0.9030 46 1 1.2369 -2.6907 -0.8769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090768857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:00 Heat of formation + Delta-G solvation = -39.110679 kcal Electronic energy + Delta-G solvation = -30245.855333 eV Core-core repulsion = 25979.542332 eV Total energy + Delta-G solvation = -4266.313001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.50714 -41.14993 -39.52476 -38.56204 -36.54067 -36.41900 -35.75006 -34.01413 -33.28813 -31.80488 -30.93033 -30.56674 -28.33496 -27.71441 -26.54873 -24.20058 -23.65712 -22.83541 -22.06332 -21.55042 -21.03591 -19.25982 -18.62500 -18.54804 -17.56059 -17.49802 -17.17137 -16.99173 -16.89861 -16.57524 -16.06701 -15.71650 -15.44375 -15.28700 -15.06204 -14.93197 -14.66087 -14.54028 -14.14837 -13.87665 -13.70086 -13.64584 -13.46621 -13.20200 -13.11323 -12.89855 -12.87370 -12.82245 -12.67203 -12.37870 -12.29062 -12.05306 -11.84544 -11.58128 -11.48621 -11.41590 -10.83562 -10.71786 -10.61444 -10.10782 -9.61303 -8.70268 -7.89601 -5.34445 0.62540 0.95626 1.45738 1.46287 1.48790 1.49224 1.59844 1.97322 2.22741 2.50365 3.22727 3.33842 3.37612 3.54783 3.68241 3.77234 3.84342 3.97165 4.03606 4.10073 4.21332 4.29886 4.37027 4.47019 4.55443 4.68814 4.70535 4.77400 4.79770 4.83701 4.84890 4.90007 4.96741 5.01193 5.06961 5.14497 5.37740 5.42279 5.52863 5.63499 5.64105 6.35186 6.46831 6.57371 6.87489 6.91918 7.12524 7.14290 7.79428 8.33298 9.17118 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028768 B = 0.002301 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.058282 B =12163.537865 C =12305.350916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.286 3.714 3 N -0.307 5.307 4 N -0.445 5.445 5 C 0.144 3.856 6 C 0.492 3.508 7 O -0.579 6.579 8 N -0.700 5.700 9 C 0.171 3.829 10 H 0.070 0.930 11 C -0.119 4.119 12 C 0.146 3.854 13 N -0.598 5.598 14 C -0.255 4.255 15 H 0.060 0.940 16 C -0.046 4.046 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.272 1.272 20 H -0.296 1.296 21 H -0.283 1.283 22 C 0.149 3.851 23 C 0.094 3.906 24 H 0.074 0.926 25 O -0.560 6.560 26 C 0.633 3.367 27 O -0.598 6.598 28 N -0.556 5.556 29 C 0.086 3.914 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.162 0.838 35 H 0.419 0.581 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.009 0.991 40 H 0.252 0.748 41 H 0.075 0.925 42 H 0.003 0.997 43 H 0.388 0.612 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 -8.710 20.138 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.008 3.992 3 N -0.130 5.130 4 N -0.263 5.263 5 C 0.019 3.981 6 C 0.278 3.722 7 O -0.458 6.458 8 N -0.352 5.352 9 C 0.066 3.934 10 H 0.088 0.912 11 C -0.160 4.160 12 C 0.020 3.980 13 N -0.321 5.321 14 C -0.385 4.385 15 H 0.078 0.922 16 C -0.242 4.242 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.223 1.223 21 H -0.210 1.210 22 C 0.023 3.977 23 C 0.032 3.968 24 H 0.092 0.908 25 O -0.367 6.367 26 C 0.332 3.668 27 O -0.475 6.475 28 N -0.284 5.284 29 C -0.054 4.054 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.180 0.820 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.021 0.979 43 H 0.237 0.763 44 H 0.096 0.904 45 H 0.134 0.866 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.866 -8.988 19.517 28.594 hybrid contribution 1.669 0.282 -0.810 1.876 sum -17.198 -8.706 18.707 26.861 Atomic orbital electron populations 1.20754 0.78702 1.06805 1.06834 1.25279 0.98339 0.80733 0.94840 1.76987 0.86841 1.22408 1.26804 1.48375 1.04813 1.04634 1.68459 1.21433 0.85387 0.97814 0.93434 1.21530 0.80114 0.78063 0.92497 1.90702 1.54977 1.52398 1.47768 1.45859 1.29907 1.50330 1.09082 1.20676 0.95791 0.94171 0.82782 0.91196 1.22062 0.99243 0.96949 0.97711 1.20935 0.95493 0.87877 0.93730 1.44103 1.18751 1.02395 1.66802 1.19441 0.90436 0.99519 1.29097 0.92216 1.25727 1.01145 0.98886 0.98409 1.70169 1.32044 1.10428 1.45519 0.85191 0.80433 0.77861 0.76790 1.19669 1.22302 1.20963 1.21351 0.94643 0.91784 0.89943 1.22472 0.86543 0.95211 0.92529 0.90810 1.86318 1.36837 1.43080 1.70460 1.17027 0.84615 0.83622 0.81541 1.91030 1.36516 1.58997 1.60952 1.46072 1.05423 1.10195 1.66717 1.22198 1.01796 0.75412 1.05974 0.86002 0.87853 0.86815 0.84249 0.82036 0.74321 0.91484 0.93447 0.92728 0.97355 0.93913 0.90634 0.97874 0.76327 0.90447 0.86631 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.20 71.24 0.73 0.41 16 2 C 0.29 4.91 7.98 137.69 1.10 6.01 16 3 N -0.31 -7.39 12.53 -49.59 -0.62 -8.01 16 4 N -0.44 -12.36 3.11 -481.79 -1.50 -13.86 16 5 C 0.14 3.31 6.87 85.63 0.59 3.90 16 6 C 0.49 15.37 7.86 87.66 0.69 16.06 16 7 O -0.58 -23.97 16.09 -3.02 -0.05 -24.02 16 8 N -0.70 -20.11 5.05 -442.41 -2.23 -22.34 16 9 C 0.17 6.20 2.20 45.02 0.10 6.30 16 10 H 0.07 2.86 7.58 -2.39 -0.02 2.84 16 11 C -0.12 -4.81 5.51 30.67 0.17 -4.64 16 12 C 0.15 6.74 6.52 86.36 0.56 7.30 16 13 N -0.60 -30.48 2.93 -699.10 -2.05 -32.53 16 14 C -0.25 -14.10 9.58 84.03 0.81 -13.29 16 15 H 0.06 3.31 7.88 -2.91 -0.02 3.29 16 16 C -0.05 -2.56 4.92 84.86 0.42 -2.14 16 17 N -0.94 -54.03 11.20 21.65 0.24 -53.78 16 18 Si 0.97 44.45 29.59 68.60 2.03 46.48 16 19 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 C 0.15 6.96 4.95 86.36 0.43 7.38 16 23 C 0.09 3.32 3.38 30.68 0.10 3.43 16 24 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 25 O -0.56 -18.59 12.08 -148.98 -1.80 -20.39 16 26 C 0.63 19.23 8.60 178.99 1.54 20.77 16 27 O -0.60 -22.39 17.48 -4.72 -0.08 -22.47 16 28 N -0.56 -11.39 3.14 -668.84 -2.10 -13.49 16 29 C 0.09 0.91 10.65 127.77 1.36 2.27 16 30 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.11 -0.04 7.85 -2.39 -0.02 -0.06 16 33 H 0.14 2.73 8.11 -2.39 -0.02 2.71 16 34 H 0.16 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.42 9.38 8.25 -92.71 -0.77 8.62 16 36 H 0.07 2.75 7.61 -2.39 -0.02 2.73 16 37 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.05 2.49 7.93 -2.38 -0.02 2.47 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.08 3.83 6.06 -2.39 -0.01 3.81 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.39 10.98 9.08 -74.06 -0.67 10.31 16 44 H 0.08 1.13 7.73 -2.39 -0.02 1.11 16 45 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -87.63 383.43 0.01 -87.62 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.41 Total: 23.04 kcal Atomic # 6 Polarization: 45.17 SS G_CDS: 8.59 Total: 53.76 kcal Atomic # 7 Polarization: -135.75 SS G_CDS: -8.26 Total: -144.01 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: -1.93 Total: -66.89 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -87.63 0.01 -87.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.508 kcal (2) G-P(sol) polarization free energy of solvation -87.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds