Wall clock time and date at job start Tue Mar 31 2020 22:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29397 * 125.58618 * 2 1 4 4 N 1.40168 * 108.14059 * 180.14043 * 3 2 1 5 5 C 1.46502 * 126.34873 * 179.87958 * 4 3 2 6 6 C 1.50696 * 109.47345 * 269.68622 * 5 4 3 7 7 O 1.21281 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00464 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00292 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.45074 * 325.03194 * 9 8 6 11 11 C 1.53042 * 109.46035 * 84.99813 * 9 8 6 12 12 C 1.53197 * 109.31056 * 181.38724 * 11 9 8 13 13 N 1.46924 * 108.77415 * 305.36136 * 12 11 9 14 14 C 1.36943 * 120.62995 * 233.58592 * 13 12 11 15 15 H 1.08002 * 119.99537 * 152.32802 * 14 13 12 16 16 C 1.38806 * 119.99964 * 332.32530 * 14 13 12 17 17 N 1.31614 * 120.00241 * 342.64790 * 16 14 13 18 18 Si 1.86803 * 119.99930 * 162.64072 * 16 14 13 19 19 H 1.48505 * 109.47159 * 270.00611 * 18 16 14 20 20 H 1.48504 * 109.46763 * 30.00183 * 18 16 14 21 21 H 1.48499 * 109.47296 * 150.00297 * 18 16 14 22 22 C 1.46929 * 118.73776 * 53.86514 * 13 12 11 23 23 C 1.53041 * 109.46154 * 205.06678 * 9 8 6 24 24 H 1.09011 * 109.49404 * 298.56228 * 23 9 8 25 25 O 1.42897 * 109.49995 * 58.62555 * 23 9 8 26 26 C 1.34938 * 107.29994 * 359.61563 * 4 3 2 27 27 O 1.21811 * 126.30188 * 180.22641 * 26 4 3 28 28 N 1.34814 * 107.39469 * 0.22561 * 26 4 3 29 29 C 1.46500 * 125.83419 * 179.97438 * 28 26 4 30 30 H 1.09003 * 109.47389 * 270.28382 * 1 2 3 31 31 H 1.09005 * 109.47473 * 30.28180 * 1 2 3 32 32 H 1.08997 * 109.47771 * 150.28403 * 1 2 3 33 33 H 1.09007 * 109.47099 * 149.68635 * 5 4 3 34 34 H 1.09005 * 109.47280 * 29.68980 * 5 4 3 35 35 H 0.97004 * 119.99645 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.49938 * 61.43888 * 11 9 8 37 37 H 1.09004 * 109.52569 * 301.34829 * 11 9 8 38 38 H 1.09003 * 109.58227 * 185.57834 * 12 11 9 39 39 H 1.08999 * 109.70422 * 65.22304 * 12 11 9 40 40 H 0.97002 * 119.99928 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.58656 * 65.92557 * 22 13 12 42 42 H 1.09002 * 109.58616 * 186.34875 * 22 13 12 43 43 H 0.96693 * 114.00030 * 180.02562 * 25 23 9 44 44 H 1.09002 * 109.46980 * 0.03061 * 29 28 26 45 45 H 1.08999 * 109.46869 * 120.02778 * 29 28 26 46 46 H 1.09001 * 109.47704 * 240.02738 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2599 1.0523 0.0000 4 7 3.5971 0.6321 -0.0033 5 6 4.7793 1.4975 -0.0069 6 6 5.1855 1.7871 -1.4288 7 8 4.5499 1.3173 -2.3487 8 7 6.2551 2.5681 -1.6784 9 6 6.6497 2.8501 -3.0608 10 1 6.4542 1.9746 -3.6798 11 6 5.8427 4.0384 -3.5890 12 6 6.2330 4.3084 -5.0456 13 7 7.6894 4.4874 -5.1195 14 6 8.2264 5.6049 -5.7012 15 1 9.1946 5.9652 -5.3865 16 6 7.5262 6.2743 -6.6954 17 7 6.5338 5.6753 -7.3188 18 14 7.9923 8.0256 -7.1484 19 1 7.2195 8.9764 -6.3093 20 1 9.4450 8.2273 -6.9150 21 1 7.6831 8.2654 -8.5810 22 6 8.5588 3.4419 -4.5630 23 6 8.1425 3.1842 -3.1069 24 1 8.3347 4.0745 -2.5079 25 8 8.8933 2.0865 -2.5842 26 6 3.5937 -0.7173 0.0035 27 8 4.5736 -1.4409 0.0070 28 7 2.3062 -1.1170 0.0055 29 6 1.8393 -2.5056 0.0120 30 1 -0.3634 0.0051 1.0277 31 1 -0.3634 0.8875 -0.5182 32 1 -0.3634 -0.8925 -0.5094 33 1 5.5979 0.9965 0.5100 34 1 4.5465 2.4328 0.5022 35 1 6.7633 2.9442 -0.9427 36 1 6.0567 4.9205 -2.9856 37 1 4.7784 3.8093 -3.5341 38 1 5.7354 5.2129 -5.3955 39 1 5.9365 3.4642 -5.6681 40 1 6.0448 6.1430 -8.0138 41 1 8.4485 2.5269 -5.1449 42 1 9.5964 3.7745 -4.5944 43 1 9.8496 2.2293 -2.5827 44 1 2.6977 -3.1775 0.0154 45 1 1.2363 -2.6820 0.9026 46 1 1.2367 -2.6906 -0.8773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090768858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:04 Heat of formation + Delta-G solvation = -9.641633 kcal Electronic energy + Delta-G solvation = -30156.565975 eV Core-core repulsion = 25891.530847 eV Total energy + Delta-G solvation = -4265.035127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.57784 -39.73611 -37.96346 -37.43361 -35.52556 -35.38440 -34.29062 -32.52846 -31.98103 -30.78468 -29.80085 -28.53714 -27.60368 -26.59255 -24.90576 -22.53902 -22.16240 -21.63864 -21.18459 -20.29177 -19.51376 -17.74195 -17.55702 -17.05634 -16.59271 -16.40011 -16.21974 -15.88803 -15.47997 -14.95398 -14.75627 -14.26782 -14.19976 -13.91894 -13.87994 -13.71864 -13.38684 -13.24618 -13.10317 -12.92659 -12.81649 -12.46861 -12.24532 -12.08066 -11.98539 -11.89827 -11.56446 -11.11184 -10.88743 -10.68883 -10.54243 -10.37253 -10.33194 -10.25228 -9.94996 -9.79561 -9.69603 -9.42004 -8.76459 -8.58449 -8.45506 -6.77887 -5.85005 -3.29511 1.53282 1.75842 2.56160 2.74370 2.81941 3.34100 3.41035 3.41396 3.42860 4.12992 4.35069 4.37247 4.51785 4.67875 4.81808 4.82265 4.88168 4.97110 5.01573 5.18066 5.30229 5.32573 5.34265 5.42766 5.48181 5.56352 5.66879 5.76432 5.92301 5.97812 6.11977 6.30901 6.35622 6.48701 6.52781 6.67251 6.77827 6.86084 7.28778 7.48990 7.60357 7.68333 7.72784 7.92880 7.93988 8.37303 8.39850 9.12763 9.75176 10.31240 11.23438 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.002493 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.244551 B =11228.292587 C =12078.678354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.273 3.727 3 N -0.270 5.270 4 N -0.435 5.435 5 C 0.143 3.857 6 C 0.495 3.505 7 O -0.527 6.527 8 N -0.712 5.712 9 C 0.164 3.836 10 H 0.086 0.914 11 C -0.145 4.145 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.260 4.260 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.279 1.279 21 H -0.291 1.291 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.057 0.943 25 O -0.571 6.571 26 C 0.654 3.346 27 O -0.553 6.553 28 N -0.558 5.558 29 C 0.096 3.904 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.397 0.603 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.023 0.977 40 H 0.256 0.744 41 H 0.029 0.971 42 H 0.061 0.939 43 H 0.374 0.626 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 -11.032 19.296 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.006 4.006 3 N -0.093 5.093 4 N -0.254 5.254 5 C 0.018 3.982 6 C 0.279 3.721 7 O -0.403 6.403 8 N -0.363 5.363 9 C 0.060 3.940 10 H 0.104 0.896 11 C -0.186 4.186 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.389 4.389 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.543 5.543 18 Si 0.735 3.265 19 H -0.213 1.213 20 H -0.204 1.204 21 H -0.217 1.217 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.075 0.925 25 O -0.375 6.375 26 C 0.354 3.646 27 O -0.426 6.426 28 N -0.288 5.288 29 C -0.046 4.046 30 H 0.112 0.888 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.231 0.769 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.220 0.780 44 H 0.113 0.887 45 H 0.096 0.904 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.628 -11.051 18.540 24.059 hybrid contribution 1.077 0.585 -0.143 1.234 sum -9.551 -10.466 18.397 23.221 Atomic orbital electron populations 1.20410 0.82882 1.05404 1.04609 1.24163 0.96477 0.81926 0.97997 1.76978 0.87446 1.21027 1.23818 1.48151 1.03720 1.04720 1.68837 1.21238 0.84915 0.95952 0.96119 1.20760 0.81121 0.79008 0.91242 1.90737 1.52873 1.50806 1.45856 1.45991 1.29910 1.50822 1.09590 1.21015 0.92043 0.99476 0.81430 0.89555 1.22592 0.98758 0.96073 1.01140 1.20827 0.84111 1.01522 0.89039 1.44074 1.00672 1.18945 1.67535 1.19174 1.04275 1.01391 1.14043 0.91472 1.25082 0.99196 0.99383 0.95796 1.70039 1.23990 1.35642 1.24586 0.86255 0.78154 0.84748 0.77370 1.21332 1.20395 1.21689 1.21618 0.95252 0.93043 0.90789 1.22865 0.90392 0.87800 0.97027 0.92478 1.86494 1.21913 1.43028 1.86062 1.16612 0.83624 0.83265 0.81130 1.91082 1.34784 1.57958 1.58798 1.45778 1.06619 1.08294 1.68067 1.21813 1.01811 0.78007 1.02936 0.88843 0.88202 0.89397 0.85900 0.85846 0.76944 0.92256 0.91993 0.88841 0.95881 0.93421 0.95300 0.92095 0.77987 0.88702 0.90383 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.20 36.00 0.37 0.03 16 2 C 0.27 2.78 7.98 -154.17 -1.23 1.55 16 3 N -0.27 -3.59 12.53 32.97 0.41 -3.18 16 4 N -0.44 -6.42 3.11 -66.31 -0.21 -6.62 16 5 C 0.14 1.80 6.87 -5.19 -0.04 1.77 16 6 C 0.50 8.21 7.86 -10.99 -0.09 8.13 16 7 O -0.53 -11.29 16.09 5.56 0.09 -11.21 16 8 N -0.71 -10.86 4.92 -53.77 -0.26 -11.13 16 9 C 0.16 3.06 2.12 -67.89 -0.14 2.91 16 10 H 0.09 1.90 7.57 -51.93 -0.39 1.50 16 11 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 12 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 13 N -0.59 -14.56 2.99 -172.05 -0.51 -15.07 16 14 C -0.26 -6.97 9.58 -15.06 -0.14 -7.11 16 15 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 17 N -0.90 -26.04 11.19 55.49 0.62 -25.42 16 18 Si 0.91 21.37 29.59 -169.99 -5.03 16.34 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.12 2.50 6.17 -3.49 -0.02 2.47 16 23 C 0.08 1.39 3.16 -26.39 -0.08 1.30 16 24 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 25 O -0.57 -8.80 13.16 -35.23 -0.46 -9.27 16 26 C 0.65 10.23 8.60 -86.74 -0.75 9.48 16 27 O -0.55 -10.27 17.48 5.09 0.09 -10.18 16 28 N -0.56 -6.34 3.14 -125.41 -0.39 -6.74 16 29 C 0.10 0.64 10.65 59.85 0.64 1.28 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.23 7.85 -51.93 -0.41 -0.18 16 33 H 0.12 1.32 8.11 -51.93 -0.42 0.89 16 34 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 4.70 8.60 -40.82 -0.35 4.35 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.09 2.51 6.04 -51.93 -0.31 2.20 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.37 4.14 9.09 45.56 0.41 4.55 16 44 H 0.09 0.74 7.73 -51.93 -0.40 0.34 16 45 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -39.56 385.12 -7.66 -47.22 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.06 Total: 6.52 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: -1.74 Total: 22.93 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -0.35 Total: -68.16 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.29 Total: -30.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.56 -7.66 -47.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.579 kcal (2) G-P(sol) polarization free energy of solvation -39.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds