Wall clock time and date at job start Tue Mar 31 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29397 * 125.58618 * 2 1 4 4 N 1.40168 * 108.14059 * 180.14043 * 3 2 1 5 5 C 1.46502 * 126.34873 * 179.87958 * 4 3 2 6 6 C 1.50696 * 109.47345 * 269.68622 * 5 4 3 7 7 O 1.21281 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00464 * 180.02562 * 6 5 4 9 9 C 1.46494 * 120.00292 * 180.02562 * 8 6 5 10 10 H 1.08996 * 109.45074 * 325.03194 * 9 8 6 11 11 C 1.53042 * 109.46035 * 84.99813 * 9 8 6 12 12 C 1.53197 * 109.31056 * 181.38724 * 11 9 8 13 13 N 1.46924 * 108.77415 * 305.36136 * 12 11 9 14 14 C 1.36943 * 120.62995 * 233.58592 * 13 12 11 15 15 H 1.08002 * 119.99537 * 152.32802 * 14 13 12 16 16 C 1.38806 * 119.99964 * 332.32530 * 14 13 12 17 17 N 1.31614 * 120.00241 * 342.64790 * 16 14 13 18 18 Si 1.86803 * 119.99930 * 162.64072 * 16 14 13 19 19 H 1.48505 * 109.47159 * 270.00611 * 18 16 14 20 20 H 1.48504 * 109.46763 * 30.00183 * 18 16 14 21 21 H 1.48499 * 109.47296 * 150.00297 * 18 16 14 22 22 C 1.46929 * 118.73776 * 53.86514 * 13 12 11 23 23 C 1.53041 * 109.46154 * 205.06678 * 9 8 6 24 24 H 1.09011 * 109.49404 * 298.56228 * 23 9 8 25 25 O 1.42897 * 109.49995 * 58.62555 * 23 9 8 26 26 C 1.34938 * 107.29994 * 359.61563 * 4 3 2 27 27 O 1.21811 * 126.30188 * 180.22641 * 26 4 3 28 28 N 1.34814 * 107.39469 * 0.22561 * 26 4 3 29 29 C 1.46500 * 125.83419 * 179.97438 * 28 26 4 30 30 H 1.09003 * 109.47389 * 270.28382 * 1 2 3 31 31 H 1.09005 * 109.47473 * 30.28180 * 1 2 3 32 32 H 1.08997 * 109.47771 * 150.28403 * 1 2 3 33 33 H 1.09007 * 109.47099 * 149.68635 * 5 4 3 34 34 H 1.09005 * 109.47280 * 29.68980 * 5 4 3 35 35 H 0.97004 * 119.99645 * 359.97438 * 8 6 5 36 36 H 1.08998 * 109.49938 * 61.43888 * 11 9 8 37 37 H 1.09004 * 109.52569 * 301.34829 * 11 9 8 38 38 H 1.09003 * 109.58227 * 185.57834 * 12 11 9 39 39 H 1.08999 * 109.70422 * 65.22304 * 12 11 9 40 40 H 0.97002 * 119.99928 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.58656 * 65.92557 * 22 13 12 42 42 H 1.09002 * 109.58616 * 186.34875 * 22 13 12 43 43 H 0.96693 * 114.00030 * 180.02562 * 25 23 9 44 44 H 1.09002 * 109.46980 * 0.03061 * 29 28 26 45 45 H 1.08999 * 109.46869 * 120.02778 * 29 28 26 46 46 H 1.09001 * 109.47704 * 240.02738 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2599 1.0523 0.0000 4 7 3.5971 0.6321 -0.0033 5 6 4.7793 1.4975 -0.0069 6 6 5.1855 1.7871 -1.4288 7 8 4.5499 1.3173 -2.3487 8 7 6.2551 2.5681 -1.6784 9 6 6.6497 2.8501 -3.0608 10 1 6.4542 1.9746 -3.6798 11 6 5.8427 4.0384 -3.5890 12 6 6.2330 4.3084 -5.0456 13 7 7.6894 4.4874 -5.1195 14 6 8.2264 5.6049 -5.7012 15 1 9.1946 5.9652 -5.3865 16 6 7.5262 6.2743 -6.6954 17 7 6.5338 5.6753 -7.3188 18 14 7.9923 8.0256 -7.1484 19 1 7.2195 8.9764 -6.3093 20 1 9.4450 8.2273 -6.9150 21 1 7.6831 8.2654 -8.5810 22 6 8.5588 3.4419 -4.5630 23 6 8.1425 3.1842 -3.1069 24 1 8.3347 4.0745 -2.5079 25 8 8.8933 2.0865 -2.5842 26 6 3.5937 -0.7173 0.0035 27 8 4.5736 -1.4409 0.0070 28 7 2.3062 -1.1170 0.0055 29 6 1.8393 -2.5056 0.0120 30 1 -0.3634 0.0051 1.0277 31 1 -0.3634 0.8875 -0.5182 32 1 -0.3634 -0.8925 -0.5094 33 1 5.5979 0.9965 0.5100 34 1 4.5465 2.4328 0.5022 35 1 6.7633 2.9442 -0.9427 36 1 6.0567 4.9205 -2.9856 37 1 4.7784 3.8093 -3.5341 38 1 5.7354 5.2129 -5.3955 39 1 5.9365 3.4642 -5.6681 40 1 6.0448 6.1430 -8.0138 41 1 8.4485 2.5269 -5.1449 42 1 9.5964 3.7745 -4.5944 43 1 9.8496 2.2293 -2.5827 44 1 2.6977 -3.1775 0.0154 45 1 1.2363 -2.6820 0.9026 46 1 1.2367 -2.6906 -0.8773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090768858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:03 Heat of formation + Delta-G solvation = -41.953686 kcal Electronic energy + Delta-G solvation = -30157.967130 eV Core-core repulsion = 25891.530847 eV Total energy + Delta-G solvation = -4266.436283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.51419 -41.14564 -39.48319 -38.56864 -37.00636 -36.44981 -35.79861 -33.89590 -33.29548 -32.06919 -31.10473 -30.13405 -28.34193 -27.72438 -26.57924 -24.16523 -23.69739 -22.84814 -22.07955 -21.63499 -21.16269 -19.12378 -18.56872 -18.56204 -18.02653 -17.51361 -17.46582 -16.96891 -16.84714 -16.56482 -16.10965 -15.72440 -15.61865 -15.10698 -15.01801 -14.86576 -14.62923 -14.53508 -14.15954 -13.93871 -13.78847 -13.63243 -13.41570 -13.30333 -13.13970 -12.99223 -12.90203 -12.87835 -12.73828 -12.41983 -12.14501 -12.06749 -11.91611 -11.58393 -11.47734 -11.35655 -11.10037 -10.77040 -10.59194 -10.12062 -9.61943 -8.79982 -7.91874 -5.40220 0.62264 0.95130 1.47321 1.47966 1.48561 1.49586 1.58625 1.96616 2.21638 2.48107 3.09414 3.24939 3.33761 3.59024 3.62183 3.76259 3.85039 4.00477 4.03963 4.09161 4.17664 4.21460 4.35866 4.46373 4.49074 4.64147 4.69678 4.76494 4.79880 4.82687 4.82879 4.90081 4.95526 4.99407 5.06123 5.08524 5.33210 5.40140 5.57159 5.63077 5.63337 6.31560 6.45322 6.56726 6.86677 6.87480 7.07090 7.15916 7.75154 8.28452 9.15557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.002493 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.244551 B =11228.292587 C =12078.678354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.285 3.715 3 N -0.308 5.308 4 N -0.445 5.445 5 C 0.146 3.854 6 C 0.491 3.509 7 O -0.583 6.583 8 N -0.696 5.696 9 C 0.171 3.829 10 H 0.046 0.954 11 C -0.126 4.126 12 C 0.181 3.819 13 N -0.603 5.603 14 C -0.265 4.265 15 H 0.079 0.921 16 C -0.052 4.052 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.283 1.283 20 H -0.263 1.263 21 H -0.299 1.299 22 C 0.117 3.883 23 C 0.103 3.897 24 H 0.081 0.919 25 O -0.572 6.572 26 C 0.633 3.367 27 O -0.597 6.597 28 N -0.556 5.556 29 C 0.086 3.914 30 H 0.123 0.877 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.419 0.581 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.064 0.936 39 H -0.014 1.014 40 H 0.251 0.749 41 H 0.007 0.993 42 H 0.079 0.921 43 H 0.397 0.603 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -10.504 22.080 26.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.008 3.992 3 N -0.131 5.131 4 N -0.263 5.263 5 C 0.021 3.979 6 C 0.277 3.723 7 O -0.462 6.462 8 N -0.348 5.348 9 C 0.066 3.934 10 H 0.064 0.936 11 C -0.166 4.166 12 C 0.054 3.946 13 N -0.327 5.327 14 C -0.395 4.395 15 H 0.097 0.903 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.801 3.199 19 H -0.209 1.209 20 H -0.188 1.188 21 H -0.226 1.226 22 C -0.010 4.010 23 C 0.042 3.958 24 H 0.099 0.901 25 O -0.380 6.380 26 C 0.332 3.668 27 O -0.475 6.475 28 N -0.284 5.284 29 C -0.054 4.054 30 H 0.141 0.859 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.180 0.820 35 H 0.256 0.744 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.004 0.996 40 H 0.060 0.940 41 H 0.025 0.975 42 H 0.097 0.903 43 H 0.247 0.753 44 H 0.096 0.904 45 H 0.134 0.866 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.850 -10.525 21.395 26.196 hybrid contribution 1.115 0.295 -1.025 1.543 sum -9.735 -10.230 20.370 24.786 Atomic orbital electron populations 1.20751 0.78731 1.06759 1.06860 1.25271 0.98341 0.80754 0.94875 1.76991 0.86915 1.22456 1.26752 1.48385 1.04816 1.04680 1.68424 1.21442 0.85401 0.97834 0.93248 1.21561 0.80343 0.77856 0.92535 1.90713 1.54668 1.52887 1.47945 1.45716 1.29833 1.50484 1.08737 1.20629 0.93133 0.96931 0.82744 0.93605 1.22292 0.98461 0.97451 0.98404 1.20533 0.84397 0.98526 0.91135 1.44286 1.01004 1.19683 1.67774 1.19597 1.04508 1.01866 1.13526 0.90315 1.25928 0.99496 1.03224 0.96133 1.70217 1.25552 1.37172 1.25461 0.85177 0.78532 0.79860 0.76312 1.20949 1.18776 1.22579 1.21794 0.95643 0.91057 0.92520 1.22404 0.89392 0.89099 0.94881 0.90083 1.86467 1.23893 1.42247 1.85364 1.17021 0.84619 0.83611 0.81530 1.91021 1.36480 1.58983 1.60985 1.46074 1.05418 1.10193 1.66727 1.22203 1.01816 0.75391 1.05967 0.85904 0.87984 0.86808 0.83980 0.82023 0.74387 0.90545 0.92857 0.91719 0.99627 0.94016 0.97492 0.90311 0.75306 0.90375 0.86553 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.20 71.23 0.73 0.30 16 2 C 0.29 5.32 7.98 137.69 1.10 6.42 16 3 N -0.31 -7.92 12.53 -49.60 -0.62 -8.54 16 4 N -0.45 -12.96 3.11 -481.78 -1.50 -14.46 16 5 C 0.15 3.49 6.87 85.63 0.59 4.08 16 6 C 0.49 16.23 7.86 87.66 0.69 16.92 16 7 O -0.58 -25.88 16.09 -3.03 -0.05 -25.93 16 8 N -0.70 -20.41 4.92 -442.43 -2.17 -22.58 16 9 C 0.17 6.37 2.12 45.02 0.10 6.47 16 10 H 0.05 2.11 7.57 -2.39 -0.02 2.09 16 11 C -0.13 -5.14 5.65 30.67 0.17 -4.97 16 12 C 0.18 9.20 5.31 86.36 0.46 9.66 16 13 N -0.60 -30.23 2.99 -698.24 -2.09 -32.32 16 14 C -0.27 -14.21 9.58 84.03 0.81 -13.41 16 15 H 0.08 3.97 7.89 -2.91 -0.02 3.95 16 16 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 17 N -0.94 -56.36 11.19 21.65 0.24 -56.12 16 18 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 C 0.12 4.78 6.17 86.51 0.53 5.31 16 23 C 0.10 3.40 3.16 30.82 0.10 3.50 16 24 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 25 O -0.57 -16.28 13.16 -148.98 -1.96 -18.24 16 26 C 0.63 19.93 8.60 178.99 1.54 21.47 16 27 O -0.60 -22.86 17.48 -4.71 -0.08 -22.94 16 28 N -0.56 -12.05 3.14 -668.84 -2.10 -14.15 16 29 C 0.09 0.99 10.65 127.77 1.36 2.35 16 30 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.11 0.12 7.85 -2.39 -0.02 0.11 16 33 H 0.14 2.83 8.11 -2.38 -0.02 2.81 16 34 H 0.16 2.54 8.14 -2.38 -0.02 2.53 16 35 H 0.42 8.71 8.60 -92.71 -0.80 7.92 16 36 H 0.08 2.86 8.14 -2.39 -0.02 2.85 16 37 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.06 3.65 6.04 -2.39 -0.01 3.64 16 39 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.08 2.91 7.93 -2.39 -0.02 2.89 16 43 H 0.40 7.46 9.09 -74.06 -0.67 6.78 16 44 H 0.08 1.20 7.73 -2.39 -0.02 1.18 16 45 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -92.36 385.12 -0.16 -92.52 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -0.45 Total: 20.95 kcal Atomic # 6 Polarization: 47.04 SS G_CDS: 8.58 Total: 55.63 kcal Atomic # 7 Polarization: -139.92 SS G_CDS: -8.24 Total: -148.17 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: -2.09 Total: -67.11 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -92.36 -0.16 -92.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.568 kcal (2) G-P(sol) polarization free energy of solvation -92.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds