Wall clock time and date at job start Tue Mar 31 2020 22:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29395 * 125.58737 * 2 1 4 4 N 1.40167 * 108.13860 * 179.97438 * 3 2 1 5 5 C 1.46507 * 126.34700 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46995 * 270.02373 * 5 4 3 7 7 O 1.21282 * 120.00312 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00085 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00344 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.45845 * 324.96642 * 9 8 6 11 11 C 1.53048 * 109.45981 * 84.92630 * 9 8 6 12 12 C 1.53191 * 109.30721 * 58.65835 * 11 9 8 13 13 N 1.47199 * 108.85944 * 54.65426 * 12 11 9 14 14 C 1.36935 * 120.81754 * 126.33179 * 13 12 11 15 15 H 1.08004 * 119.99817 * 207.53569 * 14 13 12 16 16 C 1.38804 * 120.00238 * 27.53769 * 14 13 12 17 17 N 1.31624 * 120.00025 * 17.25587 * 16 14 13 18 18 Si 1.86801 * 120.00311 * 197.25673 * 16 14 13 19 19 H 1.48505 * 109.47002 * 90.00337 * 18 16 14 20 20 H 1.48506 * 109.47209 * 209.99842 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00036 * 18 16 14 22 22 C 1.46936 * 118.55327 * 306.47272 * 13 12 11 23 23 C 1.53035 * 109.46240 * 204.99702 * 9 8 6 24 24 H 1.08994 * 109.50151 * 181.39462 * 23 9 8 25 25 O 1.42899 * 109.49945 * 61.29311 * 23 9 8 26 26 C 1.34940 * 107.30458 * 0.26002 * 4 3 2 27 27 O 1.21811 * 126.30445 * 179.72376 * 26 4 3 28 28 N 1.34818 * 107.39106 * 359.58117 * 26 4 3 29 29 C 1.46504 * 125.83254 * 180.18075 * 28 26 4 30 30 H 1.09006 * 109.46898 * 0.03138 * 1 2 3 31 31 H 1.09002 * 109.47373 * 120.02776 * 1 2 3 32 32 H 1.08995 * 109.47787 * 240.03114 * 1 2 3 33 33 H 1.08994 * 109.46859 * 150.02585 * 5 4 3 34 34 H 1.09001 * 109.47236 * 30.02250 * 5 4 3 35 35 H 0.97001 * 120.00122 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.49500 * 178.60527 * 11 9 8 37 37 H 1.08995 * 109.49552 * 298.70634 * 11 9 8 38 38 H 1.09006 * 109.57853 * 174.41953 * 12 11 9 39 39 H 1.08996 * 109.58759 * 294.84139 * 12 11 9 40 40 H 0.96996 * 120.00327 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.58629 * 293.68338 * 22 13 12 42 42 H 1.08992 * 109.58520 * 173.40016 * 22 13 12 43 43 H 0.96702 * 114.00332 * 180.16319 * 25 23 9 44 44 H 1.08997 * 109.47101 * 270.28385 * 29 28 26 45 45 H 1.08996 * 109.47111 * 30.28772 * 29 28 26 46 46 H 1.08997 * 109.47012 * 150.28641 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6320 0.0006 5 6 4.7793 1.4973 0.0003 6 6 5.1846 1.7935 -1.4206 7 8 4.5490 1.3273 -2.3423 8 7 6.2541 2.5757 -1.6672 9 6 6.6479 2.8641 -3.0486 10 1 6.4531 1.9911 -3.6715 11 6 5.8393 4.0538 -3.5714 12 6 6.0888 5.2696 -2.6734 13 7 7.5383 5.5134 -2.5944 14 6 8.0600 6.7437 -2.8934 15 1 9.0707 6.8257 -3.2652 16 6 7.2900 7.8852 -2.7186 17 7 6.2115 7.8426 -1.9652 18 14 7.7841 9.4820 -3.5526 19 1 7.1474 9.5586 -4.8920 20 1 7.3369 10.6315 -2.7255 21 1 9.2608 9.5254 -3.7033 22 6 8.4157 4.4062 -2.1904 23 6 8.1402 3.2000 -3.0939 24 1 8.4285 3.4389 -4.1175 25 8 8.8959 2.0776 -2.6344 26 6 3.5938 -0.7174 -0.0049 27 8 4.5736 -1.4411 -0.0109 28 7 2.3062 -1.1172 0.0007 29 6 1.8393 -2.5058 0.0013 30 1 -0.3633 1.0277 -0.0006 31 1 -0.3634 -0.5143 -0.8897 32 1 -0.3634 -0.5133 0.8902 33 1 5.5982 0.9940 0.5142 34 1 4.5469 2.4303 0.5138 35 1 6.7628 2.9483 -0.9301 36 1 6.1493 4.2845 -4.5905 37 1 4.7781 3.8052 -3.5608 38 1 5.5947 6.1440 -3.0969 39 1 5.6968 5.0733 -1.6755 40 1 5.6736 8.6404 -1.8428 41 1 8.2135 4.1396 -1.1531 42 1 9.4575 4.7095 -2.2933 43 1 9.8523 2.2209 -2.6338 44 1 1.7236 -2.8507 -1.0261 45 1 2.5670 -3.1335 0.5156 46 1 0.8799 -2.5663 0.5151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090768859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:07 Heat of formation + Delta-G solvation = -7.351881 kcal Electronic energy + Delta-G solvation = -30595.701917 eV Core-core repulsion = 26330.766081 eV Total energy + Delta-G solvation = -4264.935836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.49954 -39.80260 -37.94791 -37.35439 -35.49379 -35.34527 -34.02420 -32.45467 -31.81129 -30.73999 -29.88171 -28.58661 -27.53659 -26.43842 -25.20051 -22.45672 -22.11424 -21.75603 -21.17909 -20.59858 -18.76011 -17.74975 -17.45228 -17.06130 -16.61337 -16.37308 -16.02891 -15.82422 -15.08846 -14.95296 -14.85314 -14.35953 -14.09566 -13.99826 -13.80887 -13.76858 -13.42700 -13.30246 -13.04932 -12.90071 -12.76965 -12.42716 -12.08005 -11.99005 -11.96672 -11.88206 -11.66044 -11.18955 -10.91245 -10.68245 -10.47009 -10.38761 -10.27747 -10.20547 -9.96329 -9.83376 -9.51458 -9.43673 -8.63385 -8.52850 -8.50601 -6.79682 -5.87968 -3.31921 1.62079 1.84052 2.63727 2.84595 2.90599 3.33112 3.40314 3.41108 3.54495 4.20018 4.35825 4.41061 4.51832 4.70864 4.91337 4.94647 4.96435 5.05815 5.14714 5.20906 5.26861 5.32099 5.39443 5.45020 5.51445 5.58199 5.69937 5.73455 5.96056 6.01281 6.06089 6.24583 6.42648 6.44436 6.54098 6.64295 6.68514 6.92668 7.26240 7.57563 7.57607 7.70468 7.80960 7.93028 8.00997 8.33998 8.50229 9.09667 9.72141 10.27772 11.20249 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002804 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.092588 B = 9985.091964 C =11054.295174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.269 3.731 3 N -0.266 5.266 4 N -0.433 5.433 5 C 0.142 3.858 6 C 0.499 3.501 7 O -0.537 6.537 8 N -0.700 5.700 9 C 0.168 3.832 10 H 0.077 0.923 11 C -0.153 4.153 12 C 0.172 3.828 13 N -0.587 5.587 14 C -0.259 4.259 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.899 5.899 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.119 3.881 23 C 0.076 3.924 24 H 0.066 0.934 25 O -0.570 6.570 26 C 0.654 3.346 27 O -0.554 6.554 28 N -0.559 5.559 29 C 0.099 3.901 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.022 0.978 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.059 0.941 43 H 0.374 0.626 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -16.489 5.742 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.010 4.010 3 N -0.088 5.088 4 N -0.252 5.252 5 C 0.016 3.984 6 C 0.283 3.717 7 O -0.414 6.414 8 N -0.353 5.353 9 C 0.063 3.937 10 H 0.095 0.905 11 C -0.193 4.193 12 C 0.047 3.953 13 N -0.312 5.312 14 C -0.388 4.388 15 H 0.085 0.915 16 C -0.193 4.193 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.009 4.009 23 C 0.015 3.985 24 H 0.084 0.916 25 O -0.374 6.374 26 C 0.353 3.647 27 O -0.427 6.427 28 N -0.289 5.289 29 C -0.043 4.043 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.220 0.780 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.798 -16.404 5.190 19.800 hybrid contribution 1.091 0.608 -0.239 1.272 sum -8.707 -15.796 4.951 18.704 Atomic orbital electron populations 1.20404 0.82968 1.05945 1.04001 1.24164 0.96449 0.81928 0.98425 1.77026 0.87502 1.20976 1.23312 1.48183 1.03731 1.04671 1.68610 1.21256 0.84798 0.96109 0.96197 1.20697 0.80950 0.78826 0.91212 1.90688 1.53138 1.51850 1.45749 1.45827 1.29812 1.50119 1.09500 1.20828 0.92048 0.98331 0.82465 0.90460 1.22582 0.98951 0.96641 1.01107 1.20840 0.84400 0.94571 0.95535 1.44075 1.01751 1.06995 1.78332 1.19159 0.99636 0.82701 1.37303 0.91550 1.25041 0.98458 0.97700 0.98144 1.70026 1.17879 1.28590 1.37736 0.86268 0.78125 0.83067 0.79136 1.21353 1.21704 1.20428 1.21535 0.95778 0.88566 0.95015 1.22743 0.90566 0.86654 0.98566 0.91590 1.86500 1.21773 1.39673 1.89490 1.16610 0.83562 0.83280 0.81211 1.91074 1.34811 1.58026 1.58840 1.45773 1.06641 1.08236 1.68208 1.21773 1.01079 0.77911 1.03506 0.88111 0.89136 0.89234 0.85877 0.85525 0.76129 0.91502 0.91879 0.89191 0.95962 0.93480 0.95925 0.92262 0.77983 0.90963 0.89416 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 9.85 36.00 0.35 -0.03 16 2 C 0.27 2.93 7.98 -154.16 -1.23 1.70 16 3 N -0.27 -3.84 12.53 32.97 0.41 -3.42 16 4 N -0.43 -6.87 3.11 -66.31 -0.21 -7.08 16 5 C 0.14 2.05 6.87 -5.19 -0.04 2.01 16 6 C 0.50 8.92 7.86 -10.99 -0.09 8.83 16 7 O -0.54 -11.60 16.09 5.56 0.09 -11.52 16 8 N -0.70 -12.00 4.15 -53.76 -0.22 -12.22 16 9 C 0.17 3.10 2.47 -67.89 -0.17 2.93 16 10 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 11 C -0.15 -3.04 5.77 -26.61 -0.15 -3.20 16 12 C 0.17 3.96 5.07 -3.56 -0.02 3.94 16 13 N -0.59 -13.80 3.01 -172.10 -0.52 -14.32 16 14 C -0.26 -6.76 9.59 -15.06 -0.14 -6.90 16 15 H 0.07 1.70 7.89 -52.48 -0.41 1.29 16 16 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 17 N -0.90 -25.17 11.18 55.49 0.62 -24.55 16 18 Si 0.90 21.09 29.59 -169.99 -5.03 16.06 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.12 2.27 5.83 -3.70 -0.02 2.25 16 23 C 0.08 1.30 3.36 -26.61 -0.09 1.21 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 O -0.57 -8.78 13.21 -35.23 -0.47 -9.24 16 26 C 0.65 10.69 8.60 -86.73 -0.75 9.94 16 27 O -0.55 -10.63 17.72 5.09 0.09 -10.54 16 28 N -0.56 -6.66 3.14 -125.41 -0.39 -7.05 16 29 C 0.10 0.70 10.85 59.85 0.65 1.35 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.12 1.54 8.11 -51.93 -0.42 1.12 16 34 H 0.13 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.40 6.37 6.87 -40.82 -0.28 6.09 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 39 H 0.02 0.53 7.74 -51.93 -0.40 0.13 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.02 0.43 6.64 -51.93 -0.34 0.09 16 42 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 43 H 0.37 4.13 9.08 45.56 0.41 4.54 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.09 0.28 7.79 -51.93 -0.40 -0.13 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -37.97 381.28 -7.56 -45.53 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.91 Total: 8.50 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: -1.78 Total: 24.10 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.31 Total: -68.64 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.29 Total: -31.29 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.97 -7.56 -45.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.180 kcal (2) G-P(sol) polarization free energy of solvation -37.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds