Wall clock time and date at job start Tue Mar 31 2020 22:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29395 * 125.58737 * 2 1 4 4 N 1.40167 * 108.13860 * 179.97438 * 3 2 1 5 5 C 1.46507 * 126.34700 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.46995 * 270.02373 * 5 4 3 7 7 O 1.21282 * 120.00312 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00085 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00344 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.45845 * 324.96642 * 9 8 6 11 11 C 1.53048 * 109.45981 * 84.92630 * 9 8 6 12 12 C 1.53191 * 109.30721 * 58.65835 * 11 9 8 13 13 N 1.47199 * 108.85944 * 54.65426 * 12 11 9 14 14 C 1.36935 * 120.81754 * 126.33179 * 13 12 11 15 15 H 1.08004 * 119.99817 * 207.53569 * 14 13 12 16 16 C 1.38804 * 120.00238 * 27.53769 * 14 13 12 17 17 N 1.31624 * 120.00025 * 17.25587 * 16 14 13 18 18 Si 1.86801 * 120.00311 * 197.25673 * 16 14 13 19 19 H 1.48505 * 109.47002 * 90.00337 * 18 16 14 20 20 H 1.48506 * 109.47209 * 209.99842 * 18 16 14 21 21 H 1.48497 * 109.47373 * 330.00036 * 18 16 14 22 22 C 1.46936 * 118.55327 * 306.47272 * 13 12 11 23 23 C 1.53035 * 109.46240 * 204.99702 * 9 8 6 24 24 H 1.08994 * 109.50151 * 181.39462 * 23 9 8 25 25 O 1.42899 * 109.49945 * 61.29311 * 23 9 8 26 26 C 1.34940 * 107.30458 * 0.26002 * 4 3 2 27 27 O 1.21811 * 126.30445 * 179.72376 * 26 4 3 28 28 N 1.34818 * 107.39106 * 359.58117 * 26 4 3 29 29 C 1.46504 * 125.83254 * 180.18075 * 28 26 4 30 30 H 1.09006 * 109.46898 * 0.03138 * 1 2 3 31 31 H 1.09002 * 109.47373 * 120.02776 * 1 2 3 32 32 H 1.08995 * 109.47787 * 240.03114 * 1 2 3 33 33 H 1.08994 * 109.46859 * 150.02585 * 5 4 3 34 34 H 1.09001 * 109.47236 * 30.02250 * 5 4 3 35 35 H 0.97001 * 120.00122 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.49500 * 178.60527 * 11 9 8 37 37 H 1.08995 * 109.49552 * 298.70634 * 11 9 8 38 38 H 1.09006 * 109.57853 * 174.41953 * 12 11 9 39 39 H 1.08996 * 109.58759 * 294.84139 * 12 11 9 40 40 H 0.96996 * 120.00327 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.58629 * 293.68338 * 22 13 12 42 42 H 1.08992 * 109.58520 * 173.40016 * 22 13 12 43 43 H 0.96702 * 114.00332 * 180.16319 * 25 23 9 44 44 H 1.08997 * 109.47101 * 270.28385 * 29 28 26 45 45 H 1.08996 * 109.47111 * 30.28772 * 29 28 26 46 46 H 1.08997 * 109.47012 * 150.28641 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0523 0.0000 4 7 3.5972 0.6320 0.0006 5 6 4.7793 1.4973 0.0003 6 6 5.1846 1.7935 -1.4206 7 8 4.5490 1.3273 -2.3423 8 7 6.2541 2.5757 -1.6672 9 6 6.6479 2.8641 -3.0486 10 1 6.4531 1.9911 -3.6715 11 6 5.8393 4.0538 -3.5714 12 6 6.0888 5.2696 -2.6734 13 7 7.5383 5.5134 -2.5944 14 6 8.0600 6.7437 -2.8934 15 1 9.0707 6.8257 -3.2652 16 6 7.2900 7.8852 -2.7186 17 7 6.2115 7.8426 -1.9652 18 14 7.7841 9.4820 -3.5526 19 1 7.1474 9.5586 -4.8920 20 1 7.3369 10.6315 -2.7255 21 1 9.2608 9.5254 -3.7033 22 6 8.4157 4.4062 -2.1904 23 6 8.1402 3.2000 -3.0939 24 1 8.4285 3.4389 -4.1175 25 8 8.8959 2.0776 -2.6344 26 6 3.5938 -0.7174 -0.0049 27 8 4.5736 -1.4411 -0.0109 28 7 2.3062 -1.1172 0.0007 29 6 1.8393 -2.5058 0.0013 30 1 -0.3633 1.0277 -0.0006 31 1 -0.3634 -0.5143 -0.8897 32 1 -0.3634 -0.5133 0.8902 33 1 5.5982 0.9940 0.5142 34 1 4.5469 2.4303 0.5138 35 1 6.7628 2.9483 -0.9301 36 1 6.1493 4.2845 -4.5905 37 1 4.7781 3.8052 -3.5608 38 1 5.5947 6.1440 -3.0969 39 1 5.6968 5.0733 -1.6755 40 1 5.6736 8.6404 -1.8428 41 1 8.2135 4.1396 -1.1531 42 1 9.4575 4.7095 -2.2933 43 1 9.8523 2.2209 -2.6338 44 1 1.7236 -2.8507 -1.0261 45 1 2.5670 -3.1335 0.5156 46 1 0.8799 -2.5663 0.5151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090768859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:06 Heat of formation + Delta-G solvation = -37.081603 kcal Electronic energy + Delta-G solvation = -30596.991095 eV Core-core repulsion = 26330.766081 eV Total energy + Delta-G solvation = -4266.225014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.51026 -41.27625 -39.43973 -38.55596 -36.95258 -36.42132 -35.63247 -33.68852 -33.25144 -32.12700 -31.10612 -30.12287 -28.32525 -27.61950 -26.85942 -24.04748 -23.66476 -23.09029 -22.17196 -21.84868 -20.37461 -19.09116 -18.72083 -18.43177 -18.00808 -17.58488 -17.17819 -16.97821 -16.84749 -16.37481 -16.22775 -15.89134 -15.56305 -15.21150 -14.99903 -14.87979 -14.62141 -14.48338 -14.18873 -13.94564 -13.62577 -13.57419 -13.42316 -13.26856 -13.13480 -13.01007 -12.91149 -12.87558 -12.75952 -12.38967 -12.18058 -11.99968 -11.84599 -11.54757 -11.44009 -11.30784 -11.04702 -10.78258 -10.51567 -10.12307 -9.62329 -8.71760 -7.88786 -5.34338 0.62418 0.96559 1.47990 1.48150 1.48706 1.50632 1.57958 1.97874 2.25377 2.49776 3.12099 3.27480 3.34156 3.61830 3.64174 3.76667 3.87928 4.01187 4.03897 4.08179 4.21023 4.22539 4.35199 4.44147 4.50354 4.65027 4.70517 4.75769 4.80610 4.83579 4.85831 4.90405 4.96440 5.01921 5.07736 5.12884 5.38810 5.45165 5.62798 5.64267 5.69416 6.35350 6.42593 6.58150 6.86932 6.87652 7.11062 7.11933 7.80450 8.32267 9.17624 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017920 B = 0.002804 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.092588 B = 9985.091964 C =11054.295174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.285 3.715 3 N -0.311 5.311 4 N -0.444 5.444 5 C 0.142 3.858 6 C 0.497 3.503 7 O -0.579 6.579 8 N -0.694 5.694 9 C 0.170 3.830 10 H 0.066 0.934 11 C -0.138 4.138 12 C 0.186 3.814 13 N -0.602 5.602 14 C -0.263 4.263 15 H 0.072 0.928 16 C -0.046 4.046 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.289 1.289 20 H -0.297 1.297 21 H -0.267 1.267 22 C 0.119 3.881 23 C 0.096 3.904 24 H 0.070 0.930 25 O -0.572 6.572 26 C 0.635 3.365 27 O -0.596 6.596 28 N -0.555 5.555 29 C 0.089 3.911 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.125 0.875 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.008 0.992 40 H 0.250 0.750 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.396 0.604 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 -17.558 6.111 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.008 3.992 3 N -0.135 5.135 4 N -0.262 5.262 5 C 0.017 3.983 6 C 0.282 3.718 7 O -0.459 6.459 8 N -0.346 5.346 9 C 0.065 3.935 10 H 0.084 0.916 11 C -0.178 4.178 12 C 0.060 3.940 13 N -0.327 5.327 14 C -0.393 4.393 15 H 0.090 0.910 16 C -0.242 4.242 17 N -0.575 5.575 18 Si 0.793 3.207 19 H -0.216 1.216 20 H -0.224 1.224 21 H -0.192 1.192 22 C -0.007 4.007 23 C 0.035 3.965 24 H 0.087 0.913 25 O -0.379 6.379 26 C 0.334 3.666 27 O -0.473 6.473 28 N -0.283 5.283 29 C -0.051 4.051 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.246 0.754 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.262 -17.498 5.574 21.037 hybrid contribution 1.196 0.841 -0.339 1.501 sum -9.066 -16.657 5.235 19.674 Atomic orbital electron populations 1.20769 0.78605 1.07068 1.06694 1.25316 0.98365 0.80700 0.94860 1.77045 0.86979 1.22723 1.26704 1.48345 1.04659 1.04725 1.68449 1.21367 0.85526 0.97394 0.93976 1.21318 0.80270 0.77897 0.92287 1.90655 1.54413 1.53447 1.47335 1.45775 1.29766 1.49837 1.09226 1.20693 0.92958 0.96870 0.83024 0.91561 1.22366 0.98816 0.96026 1.00586 1.20524 0.84334 0.94151 0.94977 1.44231 1.02192 1.07459 1.78768 1.19495 0.99757 0.83723 1.36334 0.91006 1.25746 0.98813 1.00616 0.99049 1.70165 1.19065 1.28942 1.39361 0.85312 0.78268 0.79425 0.77674 1.21590 1.22377 1.19157 1.21668 0.95534 0.87869 0.95652 1.22345 0.89788 0.86195 0.98212 0.91251 1.86472 1.23677 1.38494 1.89264 1.16993 0.84680 0.83413 0.81544 1.91014 1.36473 1.58941 1.60915 1.46061 1.05265 1.10186 1.66782 1.22196 1.02928 0.75295 1.04690 0.87833 0.86882 0.85674 0.84163 0.83356 0.75241 0.91293 0.92741 0.92711 0.97350 0.94117 0.95252 0.91126 0.75398 0.90198 0.90177 0.84783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.85 71.24 0.70 0.21 16 2 C 0.29 5.74 7.98 137.69 1.10 6.84 16 3 N -0.31 -8.88 12.53 -49.60 -0.62 -9.50 16 4 N -0.44 -14.21 3.11 -481.78 -1.50 -15.71 16 5 C 0.14 4.14 6.87 85.63 0.59 4.73 16 6 C 0.50 17.98 7.86 87.66 0.69 18.67 16 7 O -0.58 -25.62 16.09 -3.04 -0.05 -25.66 16 8 N -0.69 -23.70 4.15 -442.40 -1.84 -25.54 16 9 C 0.17 6.22 2.47 45.02 0.11 6.33 16 10 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 11 C -0.14 -5.57 5.77 30.67 0.18 -5.39 16 12 C 0.19 8.73 5.07 86.31 0.44 9.17 16 13 N -0.60 -28.11 3.01 -698.39 -2.10 -30.21 16 14 C -0.26 -13.64 9.59 84.03 0.81 -12.83 16 15 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 16 C -0.05 -2.48 4.92 84.86 0.42 -2.06 16 17 N -0.93 -53.14 11.18 21.65 0.24 -52.90 16 18 Si 0.96 43.52 29.59 68.60 2.03 45.55 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 20 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 C 0.12 4.38 5.83 86.36 0.50 4.88 16 23 C 0.10 3.14 3.36 30.67 0.10 3.24 16 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 25 O -0.57 -16.26 13.21 -148.98 -1.97 -18.23 16 26 C 0.63 20.92 8.60 178.99 1.54 22.46 16 27 O -0.60 -23.46 17.72 -4.70 -0.08 -23.54 16 28 N -0.56 -12.54 3.14 -668.83 -2.10 -14.64 16 29 C 0.09 1.05 10.85 127.77 1.39 2.43 16 30 H 0.10 0.73 8.14 -2.38 -0.02 0.72 16 31 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.13 0.03 8.14 -2.39 -0.02 0.02 16 33 H 0.14 3.50 8.11 -2.39 -0.02 3.48 16 34 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 35 H 0.41 12.71 6.87 -92.71 -0.64 12.08 16 36 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 2.97 6.04 -2.38 -0.01 2.96 16 39 H 0.01 0.41 7.74 -2.39 -0.02 0.39 16 40 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 41 H 0.03 1.07 6.64 -2.39 -0.02 1.05 16 42 H 0.07 2.44 7.93 -2.39 -0.02 2.42 16 43 H 0.40 7.52 9.08 -74.06 -0.67 6.84 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 46 H 0.13 0.28 7.79 -2.39 -0.02 0.26 16 Total: -1.00 -85.33 381.28 0.29 -85.04 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.28 Total: 26.67 kcal Atomic # 6 Polarization: 50.11 SS G_CDS: 8.56 Total: 58.67 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -7.92 Total: -148.50 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -2.10 Total: -67.43 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -85.33 0.29 -85.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090768859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.961 kcal (2) G-P(sol) polarization free energy of solvation -85.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds