Wall clock time and date at job start Tue Mar 31 2020 22:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39639 * 120.48751 * 194.21326 * 3 2 1 5 5 N 1.31760 * 120.88290 * 180.02562 * 4 3 2 6 6 C 1.31736 * 122.03767 * 359.97438 * 5 4 3 7 7 C 1.39600 * 120.87837 * 359.97438 * 6 5 4 8 8 C 1.47863 * 120.49253 * 180.02562 * 7 6 5 9 9 O 1.21544 * 120.00004 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99644 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99800 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47119 * 179.97438 * 11 10 8 13 13 C 1.53356 * 111.23276 * 299.52824 * 12 11 10 14 14 C 1.54265 * 106.46658 * 242.72154 * 13 12 11 15 15 C 1.54681 * 104.11737 * 333.96150 * 14 13 12 16 16 C 1.54572 * 111.31930 * 179.97438 * 12 11 10 17 17 H 1.09000 * 111.92775 * 18.14589 * 16 12 11 18 18 N 1.46896 * 107.36660 * 255.05419 * 16 12 11 19 19 C 1.36941 * 125.25074 * 181.38749 * 18 16 12 20 20 H 1.08007 * 119.99602 * 359.97438 * 19 18 16 21 21 C 1.38804 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99704 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47283 * 90.00143 * 23 21 19 25 25 H 1.48500 * 109.47109 * 210.00396 * 23 21 19 26 26 H 1.48502 * 109.46997 * 329.99926 * 23 21 19 27 27 C 1.46731 * 109.50195 * 1.65140 * 18 16 12 28 28 C 1.53864 * 111.73376 * 63.26017 * 12 11 10 29 29 C 1.39679 * 120.49234 * 14.47514 * 3 2 1 30 30 H 4.52731 * 13.92886 * 0.02562 * 4 2 1 31 31 H 1.07996 * 119.56466 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.55842 * 180.02562 * 6 5 4 33 33 H 0.97003 * 120.00104 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47182 * 59.99719 * 11 10 8 35 35 H 1.08994 * 109.47202 * 299.99567 * 11 10 8 36 36 H 1.09001 * 110.05378 * 1.97279 * 13 12 11 37 37 H 1.08999 * 110.05609 * 123.41323 * 13 12 11 38 38 H 1.09000 * 110.50337 * 92.62300 * 14 13 12 39 39 H 1.09004 * 110.49841 * 215.30271 * 14 13 12 40 40 H 1.09002 * 110.61468 * 278.83449 * 15 14 13 41 41 H 1.08997 * 110.61180 * 155.84379 * 15 14 13 42 42 H 0.97007 * 120.00186 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.04541 * 100.50907 * 27 18 16 44 44 H 1.09002 * 110.04797 * 221.97387 * 27 18 16 45 45 H 1.09004 * 110.57481 * 212.76862 * 28 12 11 46 46 H 1.09000 * 110.57438 * 335.49181 * 28 12 11 47 47 H 1.07997 * 120.91895 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1674 0.2955 5 7 4.6315 1.1770 0.2972 6 6 5.3385 0.0995 0.0242 7 6 4.7120 -1.1102 -0.2811 8 6 5.5140 -2.3145 -0.5856 9 8 4.9592 -3.3632 -0.8498 10 7 6.8601 -2.2496 -0.5694 11 6 7.6546 -3.4427 -0.8717 12 6 9.1431 -3.0994 -0.7856 13 6 9.5199 -2.0052 -1.7919 14 6 10.5346 -2.6380 -2.7664 15 6 11.1938 -3.7692 -1.9427 16 6 10.0229 -4.3315 -1.0971 17 1 9.4645 -5.1092 -1.6181 18 7 10.5703 -4.8132 0.1781 19 6 11.4228 -5.8753 0.3214 20 1 11.7433 -6.4315 -0.5472 21 6 11.8741 -6.2377 1.5830 22 7 11.4823 -5.5608 2.6416 23 14 13.0364 -7.6869 1.7786 24 1 14.4402 -7.2118 1.6854 25 1 12.8160 -8.3230 3.1023 26 1 12.7768 -8.6782 0.7038 27 6 10.0578 -3.9847 1.2753 28 6 9.5493 -2.6782 0.6375 29 6 3.3153 -1.1644 -0.3009 30 1 -1.0500 -0.0012 0.0002 31 1 2.7744 2.0744 0.5248 32 1 6.4171 0.1524 0.0375 33 1 7.3028 -1.4127 -0.3582 34 1 7.4199 -3.7902 -1.8778 35 1 7.4202 -4.2272 -0.1523 36 1 8.6342 -1.6765 -2.3356 37 1 9.9746 -1.1611 -1.2734 38 1 10.0230 -3.0482 -3.6371 39 1 11.2801 -1.9035 -3.0714 40 1 11.9752 -3.3684 -1.2970 41 1 11.5960 -4.5390 -2.6012 42 1 11.7980 -5.8138 3.5233 43 1 9.2388 -4.4975 1.7796 44 1 10.8567 -3.7680 1.9845 45 1 10.3446 -1.9335 0.6042 46 1 8.6881 -2.2930 1.1834 47 1 2.7989 -2.0830 -0.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094508878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:05 Heat of formation + Delta-G solvation = 77.309278 kcal Electronic energy + Delta-G solvation = -28867.302659 eV Core-core repulsion = 25016.887269 eV Total energy + Delta-G solvation = -3850.415390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97303 -39.85015 -38.73600 -35.05128 -34.64867 -34.03235 -32.74349 -31.78122 -31.05599 -30.22091 -27.93728 -26.72913 -25.36269 -24.63301 -23.89284 -23.60124 -21.43749 -20.10333 -19.98852 -19.52094 -18.28010 -17.71500 -17.20784 -17.05378 -16.56978 -15.49666 -15.44862 -15.31177 -14.91048 -14.78324 -14.45246 -14.09235 -13.74892 -13.56006 -13.47785 -13.17268 -12.98508 -12.87799 -12.54815 -12.06716 -11.87095 -11.55769 -11.31428 -11.23473 -11.15397 -10.82779 -10.75741 -10.67397 -10.51500 -10.28068 -10.14723 -10.12858 -10.01621 -9.87144 -9.72084 -9.60077 -9.50122 -9.26586 -8.97876 -8.59945 -6.82029 -5.65982 -3.04936 0.10909 0.55260 2.23944 2.37236 2.92918 3.02376 3.40277 3.45821 3.47461 3.60442 3.67778 3.93495 4.33909 4.42877 4.48982 4.52185 4.75814 4.89118 4.94376 4.99872 5.02314 5.40828 5.48180 5.50440 5.54272 5.59093 5.64223 5.73284 5.80757 5.84585 6.00267 6.04063 6.06257 6.07485 6.14164 6.28523 6.31469 6.40275 6.44353 6.55597 6.67401 6.73899 6.84085 7.03148 7.10608 7.36996 7.41390 7.54833 7.68044 7.86654 8.07792 8.35441 9.24572 9.85617 10.48602 11.39644 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.002440 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.506132 B =11471.016188 C =12041.313789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.153 4.153 3 C -0.047 4.047 4 C 0.144 3.856 5 N -0.480 5.480 6 C 0.142 3.858 7 C -0.178 4.178 8 C 0.560 3.440 9 O -0.533 6.533 10 N -0.713 5.713 11 C 0.141 3.859 12 C -0.082 4.082 13 C -0.112 4.112 14 C -0.123 4.123 15 C -0.130 4.130 16 C 0.173 3.827 17 H 0.047 0.953 18 N -0.596 5.596 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.163 3.837 28 C -0.133 4.133 29 C 0.004 3.996 30 H 0.228 0.772 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.251 0.749 43 H 0.012 0.988 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.456 15.076 -7.208 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.154 4.154 3 C -0.049 4.049 4 C -0.013 4.013 5 N -0.188 5.188 6 C -0.016 4.016 7 C -0.183 4.183 8 C 0.345 3.655 9 O -0.410 6.410 10 N -0.364 5.364 11 C 0.018 3.982 12 C -0.083 4.083 13 C -0.150 4.150 14 C -0.161 4.161 15 C -0.170 4.170 16 C 0.064 3.936 17 H 0.065 0.935 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.038 3.962 28 C -0.172 4.172 29 C -0.022 4.022 30 H 0.244 0.756 31 H 0.183 0.817 32 H 0.181 0.819 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.030 0.970 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.258 14.941 -7.004 22.474 hybrid contribution 0.183 -1.187 0.105 1.206 sum -15.075 13.754 -6.898 21.541 Atomic orbital electron populations 1.24945 0.95730 0.98157 0.98487 1.19568 0.91450 1.02341 1.02043 1.16851 0.88226 0.95158 1.04678 1.23160 0.89687 0.96797 0.91672 1.67741 1.07550 1.29610 1.13851 1.23142 1.00631 0.86943 0.90879 1.21008 0.94755 0.95955 1.06599 1.17910 0.82332 0.87438 0.77825 1.90803 1.71320 1.30405 1.48495 1.45971 1.05440 1.14652 1.70385 1.21421 0.88978 0.86445 1.01340 1.21882 0.92706 0.96917 0.96841 1.22179 0.98706 0.97384 0.96738 1.22307 0.97781 0.98258 0.97725 1.23014 0.99363 0.96595 0.98047 1.21540 0.91412 0.91694 0.88909 0.93514 1.44337 1.52981 1.34408 1.00239 1.19028 1.18422 1.04433 0.92918 0.90536 1.24775 1.00776 0.99599 0.95484 1.69882 1.48041 1.41354 0.97779 0.86118 0.80638 0.81967 0.77053 1.21680 1.21758 1.20773 1.21426 0.97950 0.86044 0.90797 1.22787 0.99579 1.00825 0.93971 1.21828 0.92429 0.97992 0.89926 0.75562 0.81708 0.81862 0.76514 0.91295 0.90551 0.92374 0.91626 0.92355 0.92457 0.90932 0.92749 0.93838 0.96974 0.88905 0.91936 0.92570 0.82977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 19.25 29.55 0.57 -0.47 16 2 C -0.15 -1.36 13.27 -38.84 -0.52 -1.87 16 3 C -0.05 -0.45 5.73 -106.91 -0.61 -1.06 16 4 C 0.14 1.27 10.91 -17.06 -0.19 1.09 16 5 N -0.48 -4.80 10.33 -12.59 -0.13 -4.93 16 6 C 0.14 1.36 10.71 -17.08 -0.18 1.17 16 7 C -0.18 -1.98 5.89 -104.87 -0.62 -2.59 16 8 C 0.56 7.59 7.78 -12.32 -0.10 7.49 16 9 O -0.53 -9.19 16.41 5.33 0.09 -9.11 16 10 N -0.71 -8.80 4.59 -61.25 -0.28 -9.08 16 11 C 0.14 2.12 4.45 -4.04 -0.02 2.10 16 12 C -0.08 -1.28 0.53 -153.05 -0.08 -1.36 16 13 C -0.11 -1.43 5.57 -25.88 -0.14 -1.57 16 14 C -0.12 -1.66 6.85 -25.18 -0.17 -1.83 16 15 C -0.13 -2.27 6.23 -24.80 -0.15 -2.42 16 16 C 0.17 3.34 3.60 -65.84 -0.24 3.10 16 17 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 18 N -0.60 -14.40 2.99 -162.44 -0.49 -14.88 16 19 C -0.22 -5.92 9.96 -15.06 -0.15 -6.07 16 20 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 21 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 22 N -0.92 -26.54 10.14 55.49 0.56 -25.98 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.16 3.78 5.65 -3.38 -0.02 3.76 16 28 C -0.13 -2.28 5.82 -25.75 -0.15 -2.43 16 29 C 0.00 0.05 9.44 -38.46 -0.36 -0.32 16 30 H 0.23 0.60 7.80 -54.09 -0.42 0.18 16 31 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.16 1.17 6.41 -52.49 -0.34 0.83 16 33 H 0.40 3.92 5.72 -40.82 -0.23 3.69 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 37 H 0.07 0.78 7.27 -51.93 -0.38 0.41 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.41 8.06 -51.93 -0.42 1.00 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 45 H 0.06 1.03 7.41 -51.93 -0.38 0.65 16 46 H 0.06 0.86 7.24 -51.93 -0.38 0.48 16 47 H 0.15 1.64 7.73 -52.49 -0.41 1.24 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -32.29 384.66 -9.28 -41.57 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.58 Total: 3.34 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.23 Total: -3.67 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.33 Total: -54.87 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.29 -9.28 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094508878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.880 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds