Wall clock time and date at job start Tue Mar 31 2020 22:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39639 * 120.48751 * 194.21326 * 3 2 1 5 5 N 1.31760 * 120.88290 * 180.02562 * 4 3 2 6 6 C 1.31736 * 122.03767 * 359.97438 * 5 4 3 7 7 C 1.39600 * 120.87837 * 359.97438 * 6 5 4 8 8 C 1.47863 * 120.49253 * 180.02562 * 7 6 5 9 9 O 1.21544 * 120.00004 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99644 * 0.02562 * 8 7 6 11 11 C 1.46498 * 119.99800 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47119 * 179.97438 * 11 10 8 13 13 C 1.53356 * 111.23276 * 299.52824 * 12 11 10 14 14 C 1.54265 * 106.46658 * 242.72154 * 13 12 11 15 15 C 1.54681 * 104.11737 * 333.96150 * 14 13 12 16 16 C 1.54572 * 111.31930 * 179.97438 * 12 11 10 17 17 H 1.09000 * 111.92775 * 18.14589 * 16 12 11 18 18 N 1.46896 * 107.36660 * 255.05419 * 16 12 11 19 19 C 1.36941 * 125.25074 * 181.38749 * 18 16 12 20 20 H 1.08007 * 119.99602 * 359.97438 * 19 18 16 21 21 C 1.38804 * 120.00363 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99704 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47283 * 90.00143 * 23 21 19 25 25 H 1.48500 * 109.47109 * 210.00396 * 23 21 19 26 26 H 1.48502 * 109.46997 * 329.99926 * 23 21 19 27 27 C 1.46731 * 109.50195 * 1.65140 * 18 16 12 28 28 C 1.53864 * 111.73376 * 63.26017 * 12 11 10 29 29 C 1.39679 * 120.49234 * 14.47514 * 3 2 1 30 30 H 4.52731 * 13.92886 * 0.02562 * 4 2 1 31 31 H 1.07996 * 119.56466 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.55842 * 180.02562 * 6 5 4 33 33 H 0.97003 * 120.00104 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47182 * 59.99719 * 11 10 8 35 35 H 1.08994 * 109.47202 * 299.99567 * 11 10 8 36 36 H 1.09001 * 110.05378 * 1.97279 * 13 12 11 37 37 H 1.08999 * 110.05609 * 123.41323 * 13 12 11 38 38 H 1.09000 * 110.50337 * 92.62300 * 14 13 12 39 39 H 1.09004 * 110.49841 * 215.30271 * 14 13 12 40 40 H 1.09002 * 110.61468 * 278.83449 * 15 14 13 41 41 H 1.08997 * 110.61180 * 155.84379 * 15 14 13 42 42 H 0.97007 * 120.00186 * 180.02562 * 22 21 19 43 43 H 1.08998 * 110.04541 * 100.50907 * 27 18 16 44 44 H 1.09002 * 110.04797 * 221.97387 * 27 18 16 45 45 H 1.09004 * 110.57481 * 212.76862 * 28 12 11 46 46 H 1.09000 * 110.57438 * 335.49181 * 28 12 11 47 47 H 1.07997 * 120.91895 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3139 1.1674 0.2955 5 7 4.6315 1.1770 0.2972 6 6 5.3385 0.0995 0.0242 7 6 4.7120 -1.1102 -0.2811 8 6 5.5140 -2.3145 -0.5856 9 8 4.9592 -3.3632 -0.8498 10 7 6.8601 -2.2496 -0.5694 11 6 7.6546 -3.4427 -0.8717 12 6 9.1431 -3.0994 -0.7856 13 6 9.5199 -2.0052 -1.7919 14 6 10.5346 -2.6380 -2.7664 15 6 11.1938 -3.7692 -1.9427 16 6 10.0229 -4.3315 -1.0971 17 1 9.4645 -5.1092 -1.6181 18 7 10.5703 -4.8132 0.1781 19 6 11.4228 -5.8753 0.3214 20 1 11.7433 -6.4315 -0.5472 21 6 11.8741 -6.2377 1.5830 22 7 11.4823 -5.5608 2.6416 23 14 13.0364 -7.6869 1.7786 24 1 14.4402 -7.2118 1.6854 25 1 12.8160 -8.3230 3.1023 26 1 12.7768 -8.6782 0.7038 27 6 10.0578 -3.9847 1.2753 28 6 9.5493 -2.6782 0.6375 29 6 3.3153 -1.1644 -0.3009 30 1 -1.0500 -0.0012 0.0002 31 1 2.7744 2.0744 0.5248 32 1 6.4171 0.1524 0.0375 33 1 7.3028 -1.4127 -0.3582 34 1 7.4199 -3.7902 -1.8778 35 1 7.4202 -4.2272 -0.1523 36 1 8.6342 -1.6765 -2.3356 37 1 9.9746 -1.1611 -1.2734 38 1 10.0230 -3.0482 -3.6371 39 1 11.2801 -1.9035 -3.0714 40 1 11.9752 -3.3684 -1.2970 41 1 11.5960 -4.5390 -2.6012 42 1 11.7980 -5.8138 3.5233 43 1 9.2388 -4.4975 1.7796 44 1 10.8567 -3.7680 1.9845 45 1 10.3446 -1.9335 0.6042 46 1 8.6881 -2.2930 1.1834 47 1 2.7989 -2.0830 -0.5375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094508878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:04 Heat of formation + Delta-G solvation = 57.934447 kcal Electronic energy + Delta-G solvation = -28868.142814 eV Core-core repulsion = 25016.887269 eV Total energy + Delta-G solvation = -3851.255545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88224 -41.07279 -39.89531 -36.42123 -35.62733 -35.24448 -33.66383 -33.36757 -32.14024 -31.48913 -29.29996 -28.34278 -26.43074 -25.70874 -25.44553 -24.59936 -22.52714 -21.74326 -21.25857 -20.44628 -19.52578 -18.88057 -18.44131 -18.01146 -17.55206 -16.86271 -16.57702 -16.48488 -16.32906 -15.87312 -15.76419 -15.27101 -14.99379 -14.79188 -14.55994 -14.38545 -14.27647 -14.13329 -13.64327 -13.43797 -13.22176 -12.91250 -12.84553 -12.69617 -12.62536 -12.41703 -12.02849 -11.84973 -11.83385 -11.66807 -11.60450 -11.43630 -11.37220 -11.26082 -11.03733 -10.96594 -10.67004 -10.58367 -10.20234 -9.88162 -8.81859 -7.76403 -5.16386 -0.61912 -0.21971 1.45108 1.46425 1.54728 1.56691 1.64509 1.99351 2.12423 2.50581 2.86689 3.07520 3.27376 3.34280 3.49729 3.63470 3.64986 3.68154 3.70952 3.74332 3.98088 4.08262 4.27274 4.33728 4.40797 4.45219 4.54715 4.61008 4.68136 4.74246 4.81266 4.84217 4.88644 4.96696 5.03002 5.05468 5.17376 5.18830 5.26917 5.34612 5.39181 5.42697 5.47279 5.54610 5.63951 5.73576 5.88976 6.32644 6.39174 6.48941 6.67429 7.05013 7.16100 7.86257 8.46944 9.27264 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018314 B = 0.002440 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.506132 B =11471.016188 C =12041.313789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.207 4.207 3 C -0.047 4.047 4 C 0.150 3.850 5 N -0.491 5.491 6 C 0.148 3.852 7 C -0.189 4.189 8 C 0.563 3.437 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.152 3.848 12 C -0.067 4.067 13 C -0.104 4.104 14 C -0.112 4.112 15 C -0.125 4.125 16 C 0.156 3.844 17 H 0.036 0.964 18 N -0.614 5.614 19 C -0.226 4.226 20 H 0.078 0.922 21 C -0.070 4.070 22 N -0.950 5.950 23 Si 0.973 3.027 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.273 1.273 27 C 0.167 3.833 28 C -0.117 4.117 29 C -0.008 4.008 30 H 0.264 0.736 31 H 0.192 0.808 32 H 0.189 0.811 33 H 0.415 0.585 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.244 0.756 43 H -0.028 1.028 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 17.940 -8.852 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.208 4.208 3 C -0.049 4.049 4 C -0.008 4.008 5 N -0.198 5.198 6 C -0.009 4.009 7 C -0.194 4.194 8 C 0.350 3.650 9 O -0.458 6.458 10 N -0.351 5.351 11 C 0.028 3.972 12 C -0.068 4.068 13 C -0.142 4.142 14 C -0.150 4.150 15 C -0.165 4.165 16 C 0.049 3.951 17 H 0.054 0.946 18 N -0.338 5.338 19 C -0.355 4.355 20 H 0.096 0.904 21 C -0.262 4.262 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.212 1.212 25 H -0.224 1.224 26 H -0.198 1.198 27 C 0.042 3.958 28 C -0.156 4.156 29 C -0.034 4.034 30 H 0.280 0.720 31 H 0.209 0.791 32 H 0.206 0.794 33 H 0.254 0.746 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.053 0.947 43 H -0.010 1.010 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.340 17.850 -8.685 25.711 hybrid contribution 0.379 -2.105 0.615 2.226 sum -15.961 15.745 -8.071 23.829 Atomic orbital electron populations 1.25876 0.96466 0.95649 0.95740 1.19839 0.91931 1.04692 1.04359 1.16939 0.89014 0.94799 1.04111 1.23615 0.89514 0.97440 0.90184 1.67839 1.08096 1.29547 1.14326 1.23457 1.01745 0.86019 0.89700 1.20776 0.94564 0.95503 1.08559 1.18257 0.82474 0.87599 0.76692 1.90781 1.72137 1.32283 1.50594 1.45733 1.05030 1.14392 1.69939 1.21110 0.89046 0.86620 1.00427 1.21747 0.92073 0.96255 0.96759 1.22174 0.99780 0.96381 0.95837 1.22268 0.98150 0.97028 0.97547 1.22840 0.97945 0.97953 0.97754 1.21845 0.92947 0.92994 0.87275 0.94609 1.44606 1.52689 1.34134 1.02402 1.19357 1.18224 1.05013 0.92917 0.90448 1.25560 1.02868 1.02361 0.95441 1.70136 1.49396 1.42758 0.97737 0.85146 0.78796 0.79230 0.76609 1.21167 1.22449 1.19792 1.21177 0.95413 0.88576 0.90631 1.22635 1.00687 0.97641 0.94594 1.21863 0.92633 0.98343 0.90581 0.72000 0.79081 0.79389 0.74620 0.90939 0.94312 0.89664 0.89652 0.90949 0.90271 0.93240 0.93296 0.94669 1.01021 0.92518 0.90380 0.90380 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 19.25 74.32 1.43 0.15 16 2 C -0.21 -3.36 13.27 30.01 0.40 -2.97 16 3 C -0.05 -0.85 5.73 -21.35 -0.12 -0.97 16 4 C 0.15 2.33 10.91 85.04 0.93 3.26 16 5 N -0.49 -8.64 10.33 -193.75 -2.00 -10.64 16 6 C 0.15 2.51 10.71 85.04 0.91 3.42 16 7 C -0.19 -4.03 5.89 -20.02 -0.12 -4.15 16 8 C 0.56 15.04 7.78 86.79 0.68 15.71 16 9 O -0.58 -20.48 16.41 -3.85 -0.06 -20.54 16 10 N -0.70 -16.17 4.59 -465.97 -2.14 -18.31 16 11 C 0.15 4.50 4.45 86.38 0.38 4.88 16 12 C -0.07 -2.00 0.53 -51.24 -0.03 -2.03 16 13 C -0.10 -2.23 5.57 31.14 0.17 -2.06 16 14 C -0.11 -2.62 6.85 31.60 0.22 -2.41 16 15 C -0.13 -4.24 6.23 31.85 0.20 -4.04 16 16 C 0.16 6.08 3.60 46.13 0.17 6.24 16 17 H 0.04 1.47 7.92 -2.39 -0.02 1.45 16 18 N -0.61 -30.84 2.99 -667.83 -1.99 -32.83 16 19 C -0.23 -12.60 9.96 84.03 0.84 -11.76 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -4.02 5.48 84.86 0.47 -3.55 16 22 N -0.95 -57.39 10.14 21.65 0.22 -57.17 16 23 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.17 8.14 5.65 86.68 0.49 8.63 16 28 C -0.12 -3.92 5.82 31.23 0.18 -3.74 16 29 C -0.01 -0.17 9.44 23.00 0.22 0.04 16 30 H 0.26 0.34 7.80 -4.42 -0.03 0.31 16 31 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 32 H 0.19 2.03 6.41 -2.91 -0.02 2.01 16 33 H 0.42 6.85 5.72 -92.71 -0.53 6.32 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.46 7.45 -2.39 -0.02 1.44 16 37 H 0.08 1.58 7.27 -2.39 -0.02 1.57 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 43 H -0.03 -1.56 8.14 -2.39 -0.02 -1.58 16 44 H 0.06 3.17 6.17 -2.39 -0.01 3.15 16 45 H 0.08 2.41 7.41 -2.38 -0.02 2.40 16 46 H 0.08 2.27 7.24 -2.39 -0.02 2.25 16 47 H 0.14 3.23 7.73 -2.91 -0.02 3.21 16 Total: -1.00 -76.00 384.66 3.91 -72.08 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.46 Total: 14.19 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 7.40 Total: 4.68 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -5.91 Total: -118.95 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.06 Total: -20.54 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -76.00 3.91 -72.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094508878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.015 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds