Wall clock time and date at job start Tue Mar 31 2020 22:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39991 * 120.45935 * 272.63739 * 3 2 1 5 5 C 1.38222 * 118.36555 * 179.78265 * 4 3 2 6 6 C 1.39485 * 119.20495 * 0.47185 * 5 4 3 7 7 C 1.47996 * 119.56900 * 179.78889 * 6 5 4 8 8 O 1.21533 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99975 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00117 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.53516 * 111.15792 * 299.10943 * 11 10 9 13 13 C 1.54184 * 106.58677 * 240.87859 * 12 11 10 14 14 C 1.54738 * 104.35055 * 335.43230 * 13 12 11 15 15 C 1.54670 * 111.22614 * 179.97438 * 11 10 9 16 16 H 1.08997 * 112.40197 * 19.49122 * 15 11 10 17 17 N 1.47260 * 106.10062 * 256.40465 * 15 11 10 18 18 C 1.36936 * 126.51781 * 150.11397 * 17 15 11 19 19 H 1.07997 * 120.00068 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00069 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46722 * 60.00414 * 22 20 18 24 24 H 1.48498 * 109.47035 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46982 * 300.00107 * 22 20 18 26 26 C 1.47156 * 106.96205 * 330.07628 * 17 15 11 27 27 C 1.53672 * 111.17565 * 62.59921 * 11 10 9 28 28 N 1.32821 * 120.86509 * 359.76812 * 6 5 4 29 29 C 1.31298 * 121.78738 * 359.97438 * 28 6 5 30 30 H 4.52934 * 13.94736 * 359.97438 * 4 2 1 31 31 H 1.08001 * 120.81910 * 359.97438 * 4 3 2 32 32 H 1.07995 * 120.39354 * 180.21767 * 5 4 3 33 33 H 0.97002 * 120.00637 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46352 * 300.00202 * 10 9 7 35 35 H 1.09001 * 109.46925 * 59.99607 * 10 9 7 36 36 H 1.08999 * 110.04107 * 0.98594 * 12 11 10 37 37 H 1.08997 * 110.03794 * 122.44244 * 12 11 10 38 38 H 1.09003 * 110.80079 * 216.50071 * 13 12 11 39 39 H 1.09005 * 110.10620 * 94.02878 * 13 12 11 40 40 H 1.08993 * 110.65191 * 278.62051 * 14 13 12 41 41 H 1.09002 * 110.65007 * 155.53244 * 14 13 12 42 42 H 0.96998 * 120.00468 * 180.02562 * 21 20 18 43 43 H 1.08995 * 110.09479 * 150.06591 * 26 17 15 44 44 H 1.09009 * 110.08914 * 271.59251 * 26 17 15 45 45 H 1.08996 * 110.23260 * 241.05907 * 27 11 10 46 46 H 1.08994 * 110.23142 * 3.02068 * 27 11 10 47 47 H 1.07999 * 119.65440 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3157 -0.0546 1.2054 5 6 4.6969 -0.0562 1.1548 6 6 5.3326 0.0067 -0.0852 7 6 6.8112 0.0102 -0.1486 8 8 7.4634 -0.0412 0.8756 9 7 7.4344 0.0703 -1.3421 10 6 8.8981 0.0731 -1.4049 11 6 9.3457 0.1461 -2.8660 12 6 8.8416 -1.0664 -3.6612 13 6 10.0924 -1.8014 -4.1833 14 6 11.1868 -0.7085 -4.2323 15 6 10.8882 0.1521 -2.9795 16 1 11.3724 -0.2293 -2.0805 17 7 11.2708 1.5437 -3.2722 18 6 12.4405 2.1596 -2.9150 19 1 13.1908 1.6143 -2.3618 20 6 12.6618 3.4848 -3.2640 21 7 11.7472 4.1495 -3.9377 22 14 14.2572 4.3252 -2.7760 23 1 15.4036 3.5992 -3.3792 24 1 14.2471 5.7278 -3.2637 25 1 14.3888 4.3169 -1.2969 26 6 10.1574 2.1463 -4.0224 27 6 8.8778 1.4529 -3.5253 28 7 4.6283 0.0632 -1.2099 29 6 3.3153 0.0618 -1.2045 30 1 -1.0500 0.0005 0.0001 31 1 2.7967 -0.0980 2.1516 32 1 5.2770 -0.1016 2.0646 33 1 6.9139 0.1109 -2.1596 34 1 9.2832 0.9368 -0.8628 35 1 9.2829 -0.8409 -0.9525 36 1 8.2529 -1.7180 -3.0155 37 1 8.2392 -0.7343 -4.5067 38 1 9.9149 -2.2086 -5.1787 39 1 10.3763 -2.5952 -3.4924 40 1 11.0937 -0.1117 -5.1395 41 1 12.1790 -1.1548 -4.1646 42 1 11.9019 5.0754 -4.1819 43 1 10.1059 3.2162 -3.8211 44 1 10.2881 1.9724 -5.0906 45 1 8.2168 1.2362 -4.3644 46 1 8.3679 2.0817 -2.7956 47 1 2.7771 0.1093 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094559696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:08 Heat of formation + Delta-G solvation = 77.784539 kcal Electronic energy + Delta-G solvation = -28843.896682 eV Core-core repulsion = 24993.501901 eV Total energy + Delta-G solvation = -3850.394781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.88573 -39.74416 -38.62752 -34.87393 -34.67397 -33.87698 -32.58735 -31.61298 -31.12198 -30.16234 -28.06459 -26.77307 -25.59599 -24.04356 -23.85334 -23.51963 -21.07992 -20.43621 -19.60674 -19.51764 -18.74003 -17.75446 -17.10753 -16.87574 -16.01779 -15.44056 -15.35175 -15.25898 -14.93211 -14.45914 -14.31972 -14.03321 -13.75850 -13.55019 -13.49623 -13.31349 -12.81646 -12.72631 -12.50003 -11.97942 -11.82346 -11.60174 -11.33754 -11.16557 -10.95667 -10.76488 -10.60002 -10.49602 -10.37966 -10.22116 -10.21657 -10.06560 -9.99600 -9.89549 -9.64196 -9.55309 -9.44627 -9.21560 -8.80420 -8.62672 -6.84087 -5.60081 -3.05305 -0.00283 0.82913 2.20781 2.23007 2.99729 3.12128 3.42709 3.47021 3.47953 3.65861 3.68383 3.94395 4.35980 4.50439 4.54105 4.69442 4.84571 5.01790 5.03663 5.13969 5.30355 5.37044 5.51846 5.55693 5.61372 5.67132 5.69702 5.79268 5.95586 6.00237 6.10407 6.13478 6.15247 6.18084 6.22397 6.37622 6.44715 6.49709 6.53009 6.69906 6.75671 6.84006 6.93312 6.97607 7.11882 7.30079 7.55566 7.65566 7.67735 7.90228 8.23164 8.45532 9.24933 9.85928 10.52982 11.39982 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.002516 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.234888 B =11125.403286 C =11700.863724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.155 4.155 3 C -0.024 4.024 4 C -0.059 4.059 5 C -0.110 4.110 6 C 0.093 3.907 7 C 0.563 3.437 8 O -0.534 6.534 9 N -0.697 5.697 10 C 0.139 3.861 11 C -0.086 4.086 12 C -0.111 4.111 13 C -0.122 4.122 14 C -0.135 4.135 15 C 0.169 3.831 16 H 0.065 0.935 17 N -0.588 5.588 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.137 3.863 27 C -0.129 4.129 28 N -0.453 5.453 29 C 0.126 3.874 30 H 0.228 0.772 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.411 0.589 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.252 0.748 43 H 0.120 0.880 44 H 0.006 0.994 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.641 -10.949 5.166 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C -0.027 4.027 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.045 4.045 7 C 0.347 3.653 8 O -0.411 6.411 9 N -0.347 5.347 10 C 0.016 3.984 11 C -0.088 4.088 12 C -0.149 4.149 13 C -0.160 4.160 14 C -0.176 4.176 15 C 0.059 3.941 16 H 0.083 0.917 17 N -0.309 5.309 18 C -0.346 4.346 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.011 3.989 27 C -0.168 4.168 28 N -0.163 5.163 29 C -0.035 4.035 30 H 0.244 0.756 31 H 0.164 0.836 32 H 0.173 0.827 33 H 0.247 0.753 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.138 0.862 44 H 0.024 0.976 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.472 -10.668 5.085 22.778 hybrid contribution -0.207 0.393 0.504 0.672 sum -19.679 -10.275 5.588 22.892 Atomic orbital electron populations 1.24962 0.95754 0.98143 0.98377 1.19666 0.91566 1.02123 1.02192 1.17160 0.88044 1.02415 0.95045 1.21679 0.93511 0.95320 0.97982 1.22083 0.94426 0.97166 0.99399 1.21428 0.94753 0.98740 0.89603 1.17784 0.85507 0.77714 0.84307 1.90805 1.65773 1.50419 1.34129 1.45941 1.08460 1.71944 1.08403 1.21491 0.77711 1.02263 0.96919 1.22014 0.98413 0.95847 0.92558 1.22207 0.97581 0.96218 0.98870 1.22266 0.95996 0.97939 0.99835 1.23035 0.96969 0.96439 1.01107 1.21675 0.90068 0.87202 0.95109 0.91718 1.44564 1.16898 1.06144 1.63249 1.19054 0.92705 0.93816 1.29055 0.90478 1.24768 0.98527 0.96786 1.00640 1.69624 1.33246 1.10117 1.43994 0.86152 0.82703 0.78572 0.78090 1.21271 1.21655 1.21176 1.21854 0.82788 1.01636 0.92589 1.22689 1.00230 0.95078 0.98840 1.67606 1.08261 1.10481 1.29985 1.22961 0.89033 0.94282 0.97201 0.75582 0.83647 0.82691 0.75304 0.90558 0.91624 0.92345 0.91891 0.92574 0.92497 0.91228 0.92678 0.93703 0.86220 0.97630 0.92720 0.92616 0.81518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 19.25 29.55 0.57 -0.33 16 2 C -0.15 -1.24 13.28 -38.84 -0.52 -1.75 16 3 C -0.02 -0.22 5.75 -106.68 -0.61 -0.83 16 4 C -0.06 -0.50 9.89 -38.93 -0.39 -0.89 16 5 C -0.11 -1.15 9.61 -39.12 -0.38 -1.52 16 6 C 0.09 1.17 6.75 -82.98 -0.56 0.61 16 7 C 0.56 8.58 7.80 -12.26 -0.10 8.49 16 8 O -0.53 -9.61 16.31 5.34 0.09 -9.53 16 9 N -0.70 -10.25 4.83 -61.20 -0.30 -10.55 16 10 C 0.14 2.30 4.27 -4.04 -0.02 2.28 16 11 C -0.09 -1.46 0.65 -153.02 -0.10 -1.56 16 12 C -0.11 -1.58 5.62 -25.84 -0.15 -1.72 16 13 C -0.12 -1.76 6.83 -25.20 -0.17 -1.93 16 14 C -0.14 -2.44 6.38 -24.81 -0.16 -2.60 16 15 C 0.17 3.38 3.59 -65.64 -0.24 3.14 16 16 H 0.06 1.30 7.95 -51.93 -0.41 0.89 16 17 N -0.59 -14.52 2.98 -161.97 -0.48 -15.01 16 18 C -0.22 -5.96 10.33 -15.06 -0.16 -6.12 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.65 10.06 55.49 0.56 -26.09 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 C 0.14 3.25 5.68 -3.27 -0.02 3.24 16 27 C -0.13 -2.42 5.81 -25.97 -0.15 -2.57 16 28 N -0.45 -5.27 9.51 -9.49 -0.09 -5.36 16 29 C 0.13 1.18 10.92 -17.15 -0.19 1.00 16 30 H 0.23 0.43 7.80 -54.09 -0.42 0.01 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.16 1.52 7.63 -52.49 -0.40 1.12 16 33 H 0.41 5.54 7.18 -40.82 -0.29 5.25 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.76 7.47 -51.93 -0.39 0.37 16 37 H 0.06 0.86 7.10 -51.93 -0.37 0.50 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.40 7.28 -51.93 -0.38 1.02 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.12 3.27 5.45 -51.93 -0.28 2.99 16 44 H 0.01 0.14 7.71 -51.92 -0.40 -0.26 16 45 H 0.05 0.91 7.11 -51.93 -0.37 0.54 16 46 H 0.06 1.06 7.62 -51.93 -0.40 0.67 16 47 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -31.69 385.72 -9.46 -41.15 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.62 Total: 5.96 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.41 Total: -3.52 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.31 Total: -57.00 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.69 -9.46 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094559696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.937 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds