Wall clock time and date at job start Tue Mar 31 2020 22:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39991 * 120.45935 * 272.63739 * 3 2 1 5 5 C 1.38222 * 118.36555 * 179.78265 * 4 3 2 6 6 C 1.39485 * 119.20495 * 0.47185 * 5 4 3 7 7 C 1.47996 * 119.56900 * 179.78889 * 6 5 4 8 8 O 1.21533 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99975 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00117 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.53516 * 111.15792 * 299.10943 * 11 10 9 13 13 C 1.54184 * 106.58677 * 240.87859 * 12 11 10 14 14 C 1.54738 * 104.35055 * 335.43230 * 13 12 11 15 15 C 1.54670 * 111.22614 * 179.97438 * 11 10 9 16 16 H 1.08997 * 112.40197 * 19.49122 * 15 11 10 17 17 N 1.47260 * 106.10062 * 256.40465 * 15 11 10 18 18 C 1.36936 * 126.51781 * 150.11397 * 17 15 11 19 19 H 1.07997 * 120.00068 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00069 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00120 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46722 * 60.00414 * 22 20 18 24 24 H 1.48498 * 109.47035 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46982 * 300.00107 * 22 20 18 26 26 C 1.47156 * 106.96205 * 330.07628 * 17 15 11 27 27 C 1.53672 * 111.17565 * 62.59921 * 11 10 9 28 28 N 1.32821 * 120.86509 * 359.76812 * 6 5 4 29 29 C 1.31298 * 121.78738 * 359.97438 * 28 6 5 30 30 H 4.52934 * 13.94736 * 359.97438 * 4 2 1 31 31 H 1.08001 * 120.81910 * 359.97438 * 4 3 2 32 32 H 1.07995 * 120.39354 * 180.21767 * 5 4 3 33 33 H 0.97002 * 120.00637 * 359.97438 * 9 7 6 34 34 H 1.09004 * 109.46352 * 300.00202 * 10 9 7 35 35 H 1.09001 * 109.46925 * 59.99607 * 10 9 7 36 36 H 1.08999 * 110.04107 * 0.98594 * 12 11 10 37 37 H 1.08997 * 110.03794 * 122.44244 * 12 11 10 38 38 H 1.09003 * 110.80079 * 216.50071 * 13 12 11 39 39 H 1.09005 * 110.10620 * 94.02878 * 13 12 11 40 40 H 1.08993 * 110.65191 * 278.62051 * 14 13 12 41 41 H 1.09002 * 110.65007 * 155.53244 * 14 13 12 42 42 H 0.96998 * 120.00468 * 180.02562 * 21 20 18 43 43 H 1.08995 * 110.09479 * 150.06591 * 26 17 15 44 44 H 1.09009 * 110.08914 * 271.59251 * 26 17 15 45 45 H 1.08996 * 110.23260 * 241.05907 * 27 11 10 46 46 H 1.08994 * 110.23142 * 3.02068 * 27 11 10 47 47 H 1.07999 * 119.65440 * 179.97438 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3157 -0.0546 1.2054 5 6 4.6969 -0.0562 1.1548 6 6 5.3326 0.0067 -0.0852 7 6 6.8112 0.0102 -0.1486 8 8 7.4634 -0.0412 0.8756 9 7 7.4344 0.0703 -1.3421 10 6 8.8981 0.0731 -1.4049 11 6 9.3457 0.1461 -2.8660 12 6 8.8416 -1.0664 -3.6612 13 6 10.0924 -1.8014 -4.1833 14 6 11.1868 -0.7085 -4.2323 15 6 10.8882 0.1521 -2.9795 16 1 11.3724 -0.2293 -2.0805 17 7 11.2708 1.5437 -3.2722 18 6 12.4405 2.1596 -2.9150 19 1 13.1908 1.6143 -2.3618 20 6 12.6618 3.4848 -3.2640 21 7 11.7472 4.1495 -3.9377 22 14 14.2572 4.3252 -2.7760 23 1 15.4036 3.5992 -3.3792 24 1 14.2471 5.7278 -3.2637 25 1 14.3888 4.3169 -1.2969 26 6 10.1574 2.1463 -4.0224 27 6 8.8778 1.4529 -3.5253 28 7 4.6283 0.0632 -1.2099 29 6 3.3153 0.0618 -1.2045 30 1 -1.0500 0.0005 0.0001 31 1 2.7967 -0.0980 2.1516 32 1 5.2770 -0.1016 2.0646 33 1 6.9139 0.1109 -2.1596 34 1 9.2832 0.9368 -0.8628 35 1 9.2829 -0.8409 -0.9525 36 1 8.2529 -1.7180 -3.0155 37 1 8.2392 -0.7343 -4.5067 38 1 9.9149 -2.2086 -5.1787 39 1 10.3763 -2.5952 -3.4924 40 1 11.0937 -0.1117 -5.1395 41 1 12.1790 -1.1548 -4.1646 42 1 11.9019 5.0754 -4.1819 43 1 10.1059 3.2162 -3.8211 44 1 10.2881 1.9724 -5.0906 45 1 8.2168 1.2362 -4.3644 46 1 8.3679 2.0817 -2.7956 47 1 2.7771 0.1093 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094559696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:07 Heat of formation + Delta-G solvation = 59.162994 kcal Electronic energy + Delta-G solvation = -28844.704173 eV Core-core repulsion = 24993.501901 eV Total energy + Delta-G solvation = -3851.202271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82940 -41.07471 -39.84789 -36.36294 -35.54074 -35.23150 -33.37929 -33.28610 -32.19846 -31.52546 -29.54350 -28.44790 -26.63639 -25.61406 -24.97284 -24.62102 -22.29480 -22.03559 -21.07387 -20.10211 -20.00465 -19.17999 -18.71487 -17.88507 -16.95818 -16.61380 -16.57651 -16.49444 -16.24522 -15.85462 -15.49889 -15.27976 -15.10154 -14.96337 -14.73425 -14.26177 -14.16391 -14.05859 -13.59634 -13.55460 -13.35910 -12.83802 -12.81332 -12.62453 -12.51653 -12.15492 -12.02086 -11.91899 -11.83858 -11.62320 -11.57892 -11.54776 -11.36896 -11.22658 -11.05555 -10.93315 -10.69091 -10.62577 -10.20124 -9.81810 -8.85360 -7.71172 -5.17975 -0.77445 0.12211 1.37945 1.45654 1.48650 1.54527 1.71441 1.99759 2.20552 2.50573 2.90510 2.96900 3.26304 3.32430 3.53669 3.68834 3.70691 3.74938 3.78846 3.93168 3.99909 4.14549 4.32226 4.38717 4.48626 4.55631 4.62600 4.65364 4.65581 4.69995 4.79550 4.89911 4.91923 4.96099 5.07197 5.09620 5.13633 5.18511 5.25655 5.35114 5.43869 5.45568 5.50107 5.51423 5.60305 5.69455 5.90218 6.32570 6.41212 6.51515 6.68565 7.07473 7.14628 7.82959 8.49821 9.26584 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015795 B = 0.002516 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.234888 B =11125.403286 C =11700.863724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.209 4.209 3 C -0.013 4.013 4 C -0.057 4.057 5 C -0.110 4.110 6 C 0.065 3.935 7 C 0.562 3.438 8 O -0.571 6.571 9 N -0.690 5.690 10 C 0.150 3.850 11 C -0.073 4.073 12 C -0.103 4.103 13 C -0.111 4.111 14 C -0.130 4.130 15 C 0.156 3.844 16 H 0.060 0.940 17 N -0.609 5.609 18 C -0.228 4.228 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.948 5.948 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.280 1.280 26 C 0.141 3.859 27 C -0.116 4.116 28 N -0.464 5.464 29 C 0.118 3.882 30 H 0.264 0.736 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.418 0.582 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.245 0.755 43 H 0.083 0.917 44 H -0.015 1.015 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.737 -12.982 5.381 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.210 4.210 3 C -0.015 4.015 4 C -0.082 4.082 5 C -0.131 4.131 6 C -0.072 4.072 7 C 0.348 3.652 8 O -0.450 6.450 9 N -0.341 5.341 10 C 0.027 3.973 11 C -0.075 4.075 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.170 4.170 15 C 0.048 3.952 16 H 0.078 0.922 17 N -0.330 5.330 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.598 5.598 22 Si 0.805 3.195 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.207 1.207 26 C 0.015 3.985 27 C -0.155 4.155 28 N -0.175 5.175 29 C -0.043 4.043 30 H 0.280 0.720 31 H 0.190 0.810 32 H 0.173 0.827 33 H 0.256 0.744 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.003 0.997 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.584 -12.745 5.291 26.466 hybrid contribution 0.577 1.015 0.462 1.256 sum -22.007 -11.730 5.754 25.593 Atomic orbital electron populations 1.25890 0.96443 0.94819 0.95710 1.19787 0.91803 1.04674 1.04699 1.17331 0.89049 1.00312 0.94857 1.21960 0.92594 0.94371 0.99250 1.22151 0.95413 0.96892 0.98636 1.21057 0.93158 1.02065 0.90907 1.18210 0.86817 0.76519 0.83647 1.90773 1.66964 1.52092 1.35174 1.45789 1.07492 1.71924 1.08880 1.21202 0.79000 1.00964 0.96159 1.21864 0.96131 0.96385 0.93094 1.22178 0.97867 0.94884 0.99138 1.22223 0.94078 0.96900 1.01643 1.22873 0.98604 0.97029 0.98542 1.21979 0.92138 0.85215 0.95877 0.92182 1.44786 1.16537 1.08310 1.63394 1.19406 0.93760 0.94207 1.28347 0.90293 1.25563 1.01647 0.97584 1.01417 1.69902 1.34752 1.09823 1.45320 0.85173 0.79390 0.77137 0.77791 1.20473 1.22089 1.20657 1.21606 0.85096 1.00191 0.91597 1.22527 0.97929 0.95421 0.99587 1.67520 1.09358 1.10954 1.29673 1.23374 0.88333 0.93961 0.98586 0.72011 0.80956 0.82681 0.74378 0.94154 0.90977 0.90247 0.90548 0.90416 0.90777 0.93657 0.92795 0.94500 0.89932 0.99700 0.89974 0.93334 0.79231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 19.25 74.32 1.43 0.59 16 2 C -0.21 -2.71 13.28 30.02 0.40 -2.31 16 3 C -0.01 -0.21 5.75 -21.20 -0.12 -0.33 16 4 C -0.06 -0.86 9.89 22.69 0.22 -0.64 16 5 C -0.11 -2.24 9.61 22.57 0.22 -2.03 16 6 C 0.06 1.62 6.75 41.88 0.28 1.90 16 7 C 0.56 17.37 7.80 86.83 0.68 18.05 16 8 O -0.57 -21.17 16.31 -3.82 -0.06 -21.23 16 9 N -0.69 -20.15 4.83 -465.83 -2.25 -22.40 16 10 C 0.15 5.02 4.27 86.38 0.37 5.39 16 11 C -0.07 -2.43 0.65 -51.22 -0.03 -2.46 16 12 C -0.10 -2.64 5.62 31.17 0.18 -2.46 16 13 C -0.11 -2.86 6.83 31.59 0.22 -2.64 16 14 C -0.13 -4.63 6.38 31.84 0.20 -4.43 16 15 C 0.16 6.30 3.59 46.06 0.17 6.46 16 16 H 0.06 2.46 7.95 -2.39 -0.02 2.44 16 17 N -0.61 -31.25 2.98 -666.36 -1.99 -33.24 16 18 C -0.23 -12.92 10.33 84.03 0.87 -12.06 16 19 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 21 N -0.95 -57.41 10.06 21.65 0.22 -57.19 16 22 Si 0.98 46.90 29.55 68.60 2.03 48.92 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 26 C 0.14 7.00 5.68 86.52 0.49 7.49 16 27 C -0.12 -4.37 5.81 31.09 0.18 -4.19 16 28 N -0.46 -10.34 9.51 -183.94 -1.75 -12.09 16 29 C 0.12 2.02 10.92 85.18 0.93 2.95 16 30 H 0.26 -0.42 7.80 -4.42 -0.03 -0.45 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.16 3.06 7.63 -2.91 -0.02 3.03 16 33 H 0.42 10.83 7.18 -92.71 -0.67 10.17 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 1.78 7.47 -2.39 -0.02 1.76 16 37 H 0.08 1.81 7.10 -2.39 -0.02 1.79 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.04 1.82 7.28 -2.39 -0.02 1.81 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.08 4.78 5.45 -2.39 -0.01 4.77 16 44 H -0.01 -0.79 7.71 -2.38 -0.02 -0.80 16 45 H 0.08 2.63 7.11 -2.39 -0.02 2.62 16 46 H 0.05 1.89 7.62 -2.39 -0.02 1.87 16 47 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -73.37 385.72 3.66 -69.71 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.32 Total: 21.80 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 7.14 Total: 5.72 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -5.77 Total: -124.92 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.06 Total: -21.23 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.92 kcal Total: -73.37 3.66 -69.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094559696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.873 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds