Wall clock time and date at job start Tue Mar 31 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39722 * 119.59300 * 73.04737 * 3 2 1 5 5 C 1.37975 * 119.20123 * 179.97438 * 4 3 2 6 6 C 1.40235 * 118.40343 * 0.02562 * 5 4 3 7 7 C 1.47674 * 120.44534 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99805 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00387 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00237 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46998 * 180.02562 * 10 9 7 12 12 C 1.53433 * 111.21896 * 298.98449 * 11 10 9 13 13 C 1.53648 * 107.15705 * 242.10501 * 12 11 10 14 14 C 1.53892 * 105.87178 * 339.99978 * 13 12 11 15 15 C 1.53743 * 105.45436 * 28.28388 * 14 13 12 16 16 H 1.09007 * 110.52488 * 94.80489 * 15 14 13 17 17 N 1.46971 * 110.07556 * 218.82465 * 15 14 13 18 18 C 1.36940 * 126.36268 * 267.86849 * 17 15 14 19 19 H 1.08000 * 119.99612 * 359.97438 * 18 17 15 20 20 C 1.38805 * 120.00208 * 180.02562 * 18 17 15 21 21 N 1.31627 * 119.99793 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00316 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46822 * 59.99941 * 22 20 18 24 24 H 1.48497 * 109.47309 * 179.97438 * 22 20 18 25 25 H 1.48489 * 109.46951 * 300.00096 * 22 20 18 26 26 C 1.47109 * 107.27380 * 87.86807 * 17 15 14 27 27 C 1.53897 * 111.24054 * 61.21478 * 11 10 9 28 28 C 1.39660 * 119.11375 * 0.26907 * 6 5 4 29 29 N 1.31481 * 120.71589 * 359.40951 * 28 6 5 30 30 H 4.51253 * 14.17670 * 0.02562 * 4 2 1 31 31 H 1.07995 * 120.40179 * 359.97438 * 4 3 2 32 32 H 1.08005 * 120.80036 * 180.02562 * 5 4 3 33 33 H 0.97010 * 119.99854 * 0.02562 * 9 7 6 34 34 H 1.08993 * 109.47452 * 60.00368 * 10 9 7 35 35 H 1.09000 * 109.47175 * 300.00158 * 10 9 7 36 36 H 1.09002 * 109.89983 * 1.48787 * 12 11 10 37 37 H 1.09001 * 109.89983 * 122.72258 * 12 11 10 38 38 H 1.08997 * 110.17271 * 99.10192 * 13 12 11 39 39 H 1.09007 * 110.17076 * 220.82483 * 13 12 11 40 40 H 1.08997 * 110.25431 * 147.27994 * 14 13 12 41 41 H 1.09001 * 110.24802 * 269.29360 * 14 13 12 42 42 H 0.97000 * 119.99331 * 179.97438 * 21 20 18 43 43 H 1.09008 * 110.08537 * 148.90722 * 26 17 15 44 44 H 1.09002 * 110.08319 * 270.41670 * 26 17 15 45 45 H 1.08999 * 110.24485 * 243.80817 * 27 11 10 46 46 H 1.08997 * 110.24463 * 5.80105 * 27 11 10 47 47 H 1.08003 * 119.64270 * 179.70659 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2961 -0.3533 -1.1622 5 6 4.6758 -0.3494 -1.1533 6 6 5.3342 0.0118 0.0310 7 6 6.8096 0.0308 0.0910 8 8 7.4618 -0.2686 -0.8905 9 7 7.4332 0.3799 1.2336 10 6 8.8969 0.3992 1.2929 11 6 9.3450 0.8258 2.6922 12 6 8.8439 2.2361 3.0299 13 6 10.0835 3.1185 3.2434 14 6 11.2443 2.1506 3.5335 15 6 10.8814 0.8460 2.8055 16 1 11.3468 0.8159 1.8203 17 7 11.2631 -0.3123 3.6257 18 6 12.4532 -0.9877 3.5730 19 1 13.2191 -0.6785 2.8772 20 6 12.6746 -2.0703 4.4130 21 7 11.7409 -2.4474 5.2606 22 14 14.2978 -2.9921 4.3406 23 1 15.4105 -2.0604 4.6551 24 1 14.2837 -4.0980 5.3315 25 1 14.4897 -3.5502 2.9780 26 6 10.1291 -0.6114 4.5138 27 6 8.8489 -0.1629 3.7622 28 6 4.5760 0.3475 1.1548 29 7 3.2622 0.3380 1.1058 30 1 -1.0500 0.0004 -0.0005 31 1 2.7561 -0.6266 -2.0566 32 1 5.2353 -0.6182 -2.0372 33 1 6.9129 0.6184 2.0168 34 1 9.2811 1.1054 0.5570 35 1 9.2825 -0.5970 1.0762 36 1 8.2487 2.6260 2.2042 37 1 8.2463 2.2093 3.9411 38 1 10.2925 3.6971 2.3436 39 1 9.9284 3.7859 4.0912 40 1 12.1784 2.5536 3.1423 41 1 11.3287 1.9734 4.6057 42 1 11.8956 -3.2042 5.8473 43 1 10.0884 -1.6806 4.7220 44 1 10.2252 -0.0525 5.4447 45 1 8.1564 0.3332 4.4421 46 1 8.3668 -1.0189 3.2901 47 1 5.0743 0.6224 2.0727 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094563323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:40 Heat of formation + Delta-G solvation = 59.675809 kcal Electronic energy + Delta-G solvation = -28836.240154 eV Core-core repulsion = 24985.060120 eV Total energy + Delta-G solvation = -3851.180034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85038 -41.05278 -39.89363 -36.38857 -35.49887 -34.93642 -33.65366 -33.37460 -32.40490 -31.54339 -29.47190 -28.52603 -26.61930 -25.65930 -25.06686 -24.60377 -22.33992 -22.00487 -21.06118 -20.39115 -19.96961 -19.12079 -18.66174 -17.88487 -16.99487 -16.86838 -16.53527 -16.43042 -16.20822 -15.81823 -15.48383 -15.31810 -15.08886 -15.02920 -14.65371 -14.29482 -14.19877 -14.11706 -13.70719 -13.62173 -13.33738 -12.83350 -12.75821 -12.53923 -12.32054 -12.18251 -12.06870 -11.91043 -11.86601 -11.62010 -11.57367 -11.47828 -11.37225 -11.22970 -11.09536 -10.98553 -10.69005 -10.63187 -10.23624 -9.89247 -8.86389 -7.72531 -5.18824 -0.79224 0.09000 1.40458 1.45576 1.48070 1.54115 1.62608 1.99690 2.15652 2.49943 2.87236 2.91638 3.31391 3.45850 3.54239 3.60659 3.69499 3.72454 3.76249 3.92123 4.00243 4.03779 4.31524 4.38856 4.47846 4.50229 4.58278 4.64512 4.67595 4.68860 4.78935 4.87949 4.93555 4.98443 5.03387 5.09672 5.14638 5.19103 5.27365 5.35541 5.41442 5.43395 5.50854 5.52164 5.61608 5.69719 5.90208 6.40911 6.41716 6.45309 6.64283 7.07343 7.14813 7.83546 8.48825 9.25454 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016183 B = 0.002479 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.843367 B =11291.294015 C =11789.686558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.218 4.218 3 C 0.237 3.763 4 C -0.147 4.147 5 C -0.016 4.016 6 C -0.191 4.191 7 C 0.562 3.438 8 O -0.575 6.575 9 N -0.701 5.701 10 C 0.154 3.846 11 C -0.071 4.071 12 C -0.105 4.105 13 C -0.110 4.110 14 C -0.132 4.132 15 C 0.159 3.841 16 H 0.047 0.953 17 N -0.608 5.608 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.068 4.068 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.280 1.280 26 C 0.142 3.858 27 C -0.120 4.120 28 C 0.147 3.853 29 N -0.495 5.495 30 H 0.272 0.728 31 H 0.173 0.827 32 H 0.159 0.841 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.039 0.961 42 H 0.245 0.755 43 H 0.081 0.919 44 H -0.018 1.018 45 H 0.089 0.911 46 H 0.054 0.946 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.779 9.880 -10.236 26.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.218 4.218 3 C 0.103 3.897 4 C -0.166 4.166 5 C -0.042 4.042 6 C -0.196 4.196 7 C 0.349 3.651 8 O -0.456 6.456 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.073 4.073 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.173 4.173 15 C 0.051 3.949 16 H 0.065 0.935 17 N -0.329 5.329 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.597 5.597 22 Si 0.804 3.196 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.206 1.206 26 C 0.017 3.983 27 C -0.159 4.159 28 C -0.013 4.013 29 N -0.204 5.204 30 H 0.288 0.712 31 H 0.191 0.809 32 H 0.176 0.824 33 H 0.251 0.749 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.000 1.000 45 H 0.107 0.893 46 H 0.072 0.928 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -21.600 9.707 -10.064 25.730 hybrid contribution 1.664 -1.013 0.050 1.948 sum -19.936 8.694 -10.014 23.944 Atomic orbital electron populations 1.25996 0.96338 0.93144 0.94866 1.19618 0.91570 1.05662 1.04981 1.17131 0.89244 0.93624 0.89731 1.22259 0.93838 1.00850 0.99668 1.21860 0.94161 0.90677 0.97540 1.21022 0.93335 1.07708 0.97526 1.18224 0.87323 0.76597 0.82914 1.90784 1.67811 1.50255 1.36702 1.45779 1.07596 1.68107 1.13781 1.21142 0.79007 1.00488 0.96362 1.21749 0.95532 0.96889 0.93125 1.22154 0.97908 0.91704 1.02520 1.21955 0.93743 0.97105 1.02008 1.22551 0.98643 0.96304 0.99753 1.21430 0.92506 0.87456 0.93549 0.93471 1.44640 1.14013 1.32324 1.41958 1.19374 0.92054 1.08000 1.16365 0.90450 1.25547 1.01500 1.00195 0.98820 1.69927 1.33760 1.29427 1.26550 0.85192 0.79477 0.77895 0.77041 1.20577 1.22050 1.20614 1.21806 0.84885 1.01435 0.90214 1.22881 0.97817 0.97990 0.97166 1.23244 0.88495 0.91875 0.97691 1.67805 1.10050 1.14938 1.27605 0.71223 0.80909 0.82360 0.74875 0.91000 0.94064 0.89745 0.90065 0.90758 0.90821 0.92832 0.94174 0.94480 0.90140 0.99972 0.89252 0.92751 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 19.25 74.32 1.43 0.59 16 2 C -0.22 -3.70 13.43 30.01 0.40 -3.29 16 3 C 0.24 4.71 6.59 40.58 0.27 4.98 16 4 C -0.15 -2.37 9.77 22.57 0.22 -2.15 16 5 C -0.02 -0.31 9.70 22.69 0.22 -0.09 16 6 C -0.19 -4.09 5.89 -19.96 -0.12 -4.21 16 7 C 0.56 14.94 7.77 86.74 0.67 15.61 16 8 O -0.57 -19.80 16.41 -3.97 -0.07 -19.86 16 9 N -0.70 -16.66 4.79 -466.14 -2.23 -18.89 16 10 C 0.15 4.58 4.23 86.38 0.37 4.95 16 11 C -0.07 -2.18 0.72 -51.37 -0.04 -2.21 16 12 C -0.11 -2.39 5.60 30.96 0.17 -2.22 16 13 C -0.11 -2.70 6.80 31.11 0.21 -2.49 16 14 C -0.13 -4.57 6.45 31.15 0.20 -4.37 16 15 C 0.16 6.21 3.39 45.51 0.15 6.36 16 16 H 0.05 1.90 7.85 -2.38 -0.02 1.88 16 17 N -0.61 -30.50 2.97 -667.93 -1.98 -32.49 16 18 C -0.23 -12.79 10.32 84.03 0.87 -11.92 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 20 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 21 N -0.95 -56.47 10.06 21.65 0.22 -56.25 16 22 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 26 C 0.14 6.83 6.00 86.97 0.52 7.35 16 27 C -0.12 -4.11 5.81 31.61 0.18 -3.93 16 28 C 0.15 2.81 10.70 85.09 0.91 3.72 16 29 N -0.50 -10.86 10.27 -188.03 -1.93 -12.79 16 30 H 0.27 -0.13 7.80 -4.42 -0.03 -0.17 16 31 H 0.17 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.16 2.81 7.73 -2.91 -0.02 2.79 16 33 H 0.41 7.41 5.87 -92.70 -0.54 6.87 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.55 7.46 -2.39 -0.02 1.53 16 37 H 0.08 1.65 7.01 -2.39 -0.02 1.63 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.60 7.94 -2.39 -0.02 1.58 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.08 4.53 5.51 -2.38 -0.01 4.51 16 44 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.09 2.48 7.04 -2.39 -0.02 2.46 16 46 H 0.05 1.89 7.65 -2.39 -0.02 1.87 16 47 H 0.19 2.49 6.40 -2.91 -0.02 2.47 16 Total: -1.00 -75.54 384.58 3.60 -71.95 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.45 Total: 16.70 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.12 Total: 3.25 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.93 Total: -120.41 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.54 3.60 -71.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094563323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.622 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds