Wall clock time and date at job start Tue Mar 31 2020 22:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39983 * 120.45916 * 191.74846 * 3 2 1 5 5 C 1.38218 * 118.36746 * 180.02562 * 4 3 2 6 6 C 1.39495 * 119.20703 * 0.02562 * 5 4 3 7 7 C 1.47990 * 119.57022 * 179.97438 * 6 5 4 8 8 O 1.21538 * 120.00193 * 5.98354 * 7 6 5 9 9 N 1.34773 * 119.99973 * 185.98906 * 7 6 5 10 10 C 1.48120 * 127.84307 * 355.67035 * 9 7 6 11 11 C 1.54330 * 104.69414 * 140.29564 * 10 9 7 12 12 H 1.08998 * 112.59509 * 262.03913 * 11 10 9 13 13 C 1.54161 * 108.86480 * 137.45098 * 11 10 9 14 14 C 1.54846 * 104.32752 * 271.24538 * 13 11 10 15 15 C 1.55779 * 102.30761 * 321.12459 * 14 13 11 16 16 C 1.54166 * 103.88378 * 39.35150 * 15 14 13 17 17 C 1.52996 * 111.81906 * 212.54026 * 16 15 14 18 18 N 1.46496 * 109.47190 * 299.25060 * 17 16 15 19 19 C 1.36940 * 120.00390 * 179.72615 * 18 17 16 20 20 H 1.07997 * 119.99585 * 0.27907 * 19 18 17 21 21 C 1.38812 * 120.00219 * 180.27941 * 19 18 17 22 22 N 1.31621 * 119.99897 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99978 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46872 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46750 * 119.99926 * 23 21 19 26 26 H 1.48492 * 109.47397 * 240.00135 * 23 21 19 27 27 C 1.48121 * 127.84482 * 175.72440 * 9 7 6 28 28 N 1.32823 * 120.85789 * 0.25139 * 6 5 4 29 29 C 1.31293 * 121.78746 * 359.47613 * 28 6 5 30 30 H 4.52932 * 13.94636 * 359.97438 * 4 2 1 31 31 H 1.08002 * 120.82035 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.39909 * 180.02562 * 5 4 3 33 33 H 1.09002 * 110.39301 * 21.49291 * 10 9 7 34 34 H 1.08996 * 110.49415 * 259.14610 * 10 9 7 35 35 H 1.09001 * 110.45936 * 29.94918 * 13 11 10 36 36 H 1.08989 * 110.46620 * 152.52758 * 13 11 10 37 37 H 1.09004 * 110.75948 * 80.11437 * 14 13 11 38 38 H 1.09000 * 110.75949 * 203.31365 * 14 13 11 39 39 H 1.08993 * 111.74620 * 280.25388 * 15 14 13 40 40 H 1.08997 * 109.59825 * 157.39807 * 15 14 13 41 41 H 1.09009 * 109.47008 * 179.25618 * 17 16 15 42 42 H 1.08999 * 109.47740 * 59.25907 * 17 16 15 43 43 H 0.97006 * 119.99892 * 0.02562 * 18 17 16 44 44 H 0.97003 * 119.99754 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.39497 * 100.90079 * 27 9 7 46 46 H 1.09001 * 110.39039 * 338.50630 * 27 9 7 47 47 H 1.08000 * 119.65188 * 180.29145 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3151 1.1823 0.2457 5 6 4.6964 1.1337 0.2349 6 6 5.3327 -0.0815 -0.0190 7 6 6.8113 -0.1426 -0.0330 8 8 7.4630 0.8337 0.2820 9 7 7.4352 -1.2810 -0.3953 10 6 6.8218 -2.5886 -0.7236 11 6 7.6421 -3.1165 -1.9195 12 1 7.1589 -2.9224 -2.8771 13 6 7.9174 -4.6189 -1.7107 14 6 9.2399 -4.6580 -0.9063 15 6 10.0594 -3.5048 -1.5585 16 6 9.0118 -2.4014 -1.8074 17 6 9.3336 -1.5839 -3.0600 18 7 10.6357 -0.9327 -2.8970 19 6 11.1388 -0.1471 -3.8995 20 1 10.5735 -0.0040 -4.8085 21 6 12.3752 0.4652 -3.7473 22 7 13.0643 0.2903 -2.6397 23 14 13.0617 1.5362 -5.1152 24 1 12.1004 1.5708 -6.2465 25 1 13.2748 2.9144 -4.6050 26 1 14.3552 0.9754 -5.5812 27 6 8.8901 -1.5088 -0.5544 28 7 4.6289 -1.1831 -0.2536 29 6 3.3159 -1.1795 -0.2471 30 1 -1.0500 -0.0009 -0.0007 31 1 2.7957 2.1095 0.4381 32 1 5.2762 2.0257 0.4208 33 1 5.7776 -2.4576 -1.0076 34 1 6.9018 -3.2709 0.1225 35 1 7.1105 -5.0783 -1.1397 36 1 8.0400 -5.1209 -2.6703 37 1 9.0548 -4.4690 0.1511 38 1 9.7476 -5.6127 -1.0436 39 1 10.5163 -3.8153 -2.4981 40 1 10.8206 -3.1569 -0.8603 41 1 8.5641 -0.8258 -3.2067 42 1 9.3634 -2.2439 -3.9270 43 1 11.1436 -1.0615 -2.0806 44 1 13.9282 0.7186 -2.5332 45 1 9.2918 -2.0230 0.3187 46 1 9.4079 -0.5624 -0.7104 47 1 2.7782 -2.0965 -0.4377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112565433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:29 Heat of formation + Delta-G solvation = 80.547437 kcal Electronic energy + Delta-G solvation = -29221.250341 eV Core-core repulsion = 25370.975369 eV Total energy + Delta-G solvation = -3850.274972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00814 -40.05657 -38.26086 -34.94380 -34.51467 -34.23812 -32.57561 -31.62277 -31.01707 -29.65981 -28.92593 -26.34817 -25.38226 -24.67163 -23.90303 -23.50079 -22.00355 -20.19040 -20.01024 -19.53117 -18.44158 -17.53475 -17.05911 -16.86763 -16.01661 -15.89643 -15.41375 -15.15544 -14.85976 -14.59525 -14.41823 -13.96673 -13.86519 -13.49526 -13.32109 -13.10413 -12.98424 -12.86952 -12.55558 -12.34594 -11.98721 -11.84783 -11.57476 -11.25028 -11.09692 -10.80707 -10.77848 -10.67248 -10.58645 -10.47715 -10.27600 -10.20203 -10.19007 -10.05326 -9.86295 -9.57935 -9.38433 -9.16394 -8.80817 -8.44318 -6.83796 -5.69385 -2.97206 0.03253 0.84896 2.22321 2.26730 2.96189 3.05205 3.48356 3.53768 3.56049 3.66508 3.70368 3.91971 4.37225 4.41778 4.58275 4.70333 4.71687 4.76874 4.84764 4.93013 5.26496 5.34839 5.39142 5.42100 5.49915 5.57508 5.59846 5.64722 5.68535 5.70608 5.73067 5.82460 5.96789 6.04709 6.12325 6.13783 6.19884 6.24818 6.33439 6.35646 6.47389 6.60478 6.62111 6.69846 6.85148 6.91963 6.99325 7.34653 7.72965 7.77318 8.23176 8.49529 9.60916 10.18655 10.53744 11.53638 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003052 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.498650 B = 9172.338507 C =10617.158397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C -0.026 4.026 4 C -0.057 4.057 5 C -0.109 4.109 6 C 0.101 3.899 7 C 0.582 3.418 8 O -0.527 6.527 9 N -0.596 5.596 10 C 0.094 3.906 11 C -0.100 4.100 12 H 0.085 0.915 13 C -0.114 4.114 14 C -0.126 4.126 15 C -0.104 4.104 16 C -0.075 4.075 17 C 0.173 3.827 18 N -0.729 5.729 19 C -0.235 4.235 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.115 3.885 28 N -0.449 5.449 29 C 0.121 3.879 30 H 0.227 0.773 31 H 0.146 0.854 32 H 0.156 0.844 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.016 0.984 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.252 -8.087 7.625 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C -0.028 4.028 4 C -0.082 4.082 5 C -0.130 4.130 6 C -0.037 4.037 7 C 0.368 3.632 8 O -0.403 6.403 9 N -0.327 5.327 10 C -0.029 4.029 11 C -0.120 4.120 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.164 4.164 15 C -0.142 4.142 16 C -0.076 4.076 17 C 0.045 3.955 18 N -0.373 5.373 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.007 4.007 28 N -0.159 5.159 29 C -0.039 4.039 30 H 0.244 0.756 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.034 0.966 42 H 0.039 0.961 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.414 -8.123 7.511 25.896 hybrid contribution -0.057 1.353 -0.352 1.399 sum -23.471 -6.770 7.159 25.455 Atomic orbital electron populations 1.24955 0.95746 0.98429 0.98283 1.19680 0.91570 1.02134 1.02046 1.17138 0.87997 0.95314 1.02351 1.21681 0.93458 0.97893 0.95215 1.22090 0.94437 0.99301 0.97138 1.21385 0.94456 0.90000 0.97828 1.17330 0.85288 0.82146 0.78412 1.90852 1.65680 1.34973 1.48772 1.48702 1.08857 1.10038 1.65091 1.23078 1.00379 0.82951 0.96497 1.22757 0.95684 0.94995 0.98587 0.89637 1.22340 0.97534 0.95020 1.00259 1.22683 0.95876 0.98764 0.99040 1.22464 0.96724 0.93718 1.01285 1.22269 0.94346 0.95200 0.95811 1.20561 0.89075 0.93208 0.92619 1.42342 1.17610 1.57283 1.20085 1.19240 1.00253 1.20960 0.96205 0.91326 1.24714 0.97552 1.01222 0.97503 1.69666 1.14344 1.48305 1.25801 0.86137 0.78677 0.80232 0.81290 1.20660 1.21925 1.21948 1.22608 0.79906 1.01596 0.96591 1.67749 1.07745 1.28754 1.11689 1.23040 0.89315 0.97073 0.94449 0.75611 0.83608 0.82606 0.86485 0.91478 0.91744 0.91478 0.91775 0.91808 0.90456 0.91349 0.96602 0.96084 0.78175 0.93633 0.91302 0.88412 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 19.25 29.55 0.57 -0.36 16 2 C -0.15 -1.24 13.28 -38.83 -0.52 -1.76 16 3 C -0.03 -0.23 5.75 -106.69 -0.61 -0.85 16 4 C -0.06 -0.52 9.89 -38.94 -0.39 -0.90 16 5 C -0.11 -1.25 9.61 -39.12 -0.38 -1.62 16 6 C 0.10 1.37 6.73 -82.97 -0.56 0.81 16 7 C 0.58 9.97 7.89 -12.27 -0.10 9.87 16 8 O -0.53 -10.86 16.62 5.33 0.09 -10.77 16 9 N -0.60 -9.59 3.31 -170.48 -0.56 -10.16 16 10 C 0.09 1.19 5.96 -2.45 -0.01 1.18 16 11 C -0.10 -1.32 3.58 -88.30 -0.32 -1.63 16 12 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 13 C -0.11 -1.23 6.08 -25.15 -0.15 -1.38 16 14 C -0.13 -1.48 6.86 -24.28 -0.17 -1.64 16 15 C -0.10 -1.59 5.19 -24.64 -0.13 -1.72 16 16 C -0.07 -1.23 0.62 -152.19 -0.09 -1.32 16 17 C 0.17 3.61 5.14 -4.05 -0.02 3.59 16 18 N -0.73 -18.75 4.93 -59.91 -0.30 -19.05 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 23 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 27 C 0.11 2.01 5.79 -2.46 -0.01 2.00 16 28 N -0.45 -5.23 6.58 -9.49 -0.06 -5.29 16 29 C 0.12 1.12 10.92 -17.15 -0.19 0.93 16 30 H 0.23 0.45 7.80 -54.09 -0.42 0.03 16 31 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.16 1.75 7.64 -52.48 -0.40 1.35 16 33 H 0.12 1.41 5.06 -51.93 -0.26 1.14 16 34 H 0.07 0.78 7.61 -51.93 -0.40 0.39 16 35 H 0.06 0.59 7.74 -51.93 -0.40 0.18 16 36 H 0.07 0.71 8.14 -51.94 -0.42 0.28 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.28 7.96 -51.93 -0.41 0.87 16 40 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 41 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.38 10.31 6.91 -40.82 -0.28 10.03 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 1.11 7.67 -51.93 -0.40 0.71 16 46 H 0.10 2.13 7.03 -51.93 -0.37 1.77 16 47 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -34.47 387.45 -9.27 -43.74 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.66 Total: 7.90 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.32 Total: -2.24 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.20 Total: -62.55 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.47 -9.27 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112565433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.291 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds