Wall clock time and date at job start Tue Mar 31 2020 22:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39725 * 119.59470 * 268.72947 * 3 2 1 5 5 C 1.37968 * 119.20239 * 180.02562 * 4 3 2 6 6 C 1.40233 * 118.40567 * 359.97438 * 5 4 3 7 7 C 1.47664 * 120.44654 * 180.02562 * 6 5 4 8 8 O 1.21573 * 120.00289 * 146.00688 * 7 6 5 9 9 N 1.34777 * 119.99940 * 326.00630 * 7 6 5 10 10 C 1.48117 * 127.84372 * 3.52877 * 9 7 6 11 11 C 1.54323 * 104.69611 * 219.72439 * 10 9 7 12 12 H 1.08998 * 111.85521 * 213.62602 * 11 10 9 13 13 C 1.54167 * 108.86444 * 89.55507 * 11 10 9 14 14 C 1.54840 * 104.33079 * 271.22758 * 13 11 10 15 15 C 1.54836 * 102.73841 * 321.81792 * 14 13 11 16 16 C 1.54165 * 104.32556 * 38.18563 * 15 14 13 17 17 C 1.53001 * 111.82573 * 213.79056 * 16 15 14 18 18 N 1.46495 * 109.47031 * 299.26247 * 17 16 15 19 19 C 1.36941 * 120.00074 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99397 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00203 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99975 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47222 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46825 * 120.00259 * 23 21 19 26 26 H 1.48493 * 109.47264 * 239.99796 * 23 21 19 27 27 C 1.48115 * 127.84657 * 183.20704 * 9 7 6 28 28 C 1.39667 * 119.11220 * 0.02562 * 6 5 4 29 29 N 1.31475 * 120.71389 * 359.97438 * 28 6 5 30 30 H 4.51264 * 14.17576 * 0.02562 * 4 2 1 31 31 H 1.08001 * 120.39952 * 359.97438 * 4 3 2 32 32 H 1.08002 * 120.79929 * 180.02562 * 5 4 3 33 33 H 1.09005 * 110.39178 * 338.52597 * 10 9 7 34 34 H 1.09000 * 110.39529 * 100.80067 * 10 9 7 35 35 H 1.08998 * 110.45946 * 29.94357 * 13 11 10 36 36 H 1.09004 * 110.46259 * 152.38500 * 13 11 10 37 37 H 1.09006 * 110.75144 * 80.12872 * 14 13 11 38 38 H 1.08997 * 110.76063 * 203.31849 * 14 13 11 39 39 H 1.09000 * 110.46549 * 156.89887 * 15 14 13 40 40 H 1.09003 * 110.46223 * 279.35576 * 15 14 13 41 41 H 1.08997 * 109.46577 * 59.26412 * 17 16 15 42 42 H 1.08992 * 109.46950 * 179.26031 * 17 16 15 43 43 H 0.97003 * 120.00103 * 359.97438 * 18 17 16 44 44 H 0.96993 * 119.99769 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.39125 * 259.08870 * 27 9 7 46 46 H 1.08999 * 110.39506 * 21.47780 * 27 9 7 47 47 H 1.08007 * 119.63844 * 179.72469 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.2960 0.0279 1.2147 5 6 4.6756 0.0288 1.2052 6 6 5.3343 0.0017 -0.0325 7 6 6.8096 0.0009 -0.0952 8 8 7.3802 -0.6072 -0.9798 9 7 7.5236 0.6745 0.8283 10 6 7.0171 1.4074 2.0116 11 6 7.8858 2.6808 2.0849 12 1 8.0602 2.9943 3.1141 13 6 7.2133 3.7914 1.2537 14 6 7.7816 3.5992 -0.1738 15 6 9.2571 3.2146 0.0951 16 6 9.1946 2.3113 1.3428 17 6 10.4257 2.4865 2.2342 18 7 11.6291 2.1237 1.4818 19 6 12.8593 2.2025 2.0781 20 1 12.9422 2.5318 3.1033 21 6 13.9995 1.8581 1.3653 22 7 13.8984 1.4563 0.1160 23 14 15.6776 1.9664 2.1786 24 1 15.5204 2.4424 3.5764 25 1 16.3137 0.6244 2.1817 26 1 16.5328 2.9177 1.4245 27 6 8.9935 0.8445 0.8941 28 6 4.5762 -0.0247 -1.2052 29 7 3.2624 -0.0247 -1.1557 30 1 -1.0500 -0.0005 0.0001 31 1 2.7559 0.0488 2.1497 32 1 5.2350 0.0492 2.1289 33 1 5.9681 1.6705 1.8750 34 1 7.1430 0.8072 2.9128 35 1 6.1307 3.6645 1.2532 36 1 7.4806 4.7738 1.6433 37 1 7.2606 2.7939 -0.6917 38 1 7.7187 4.5267 -0.7428 39 1 9.6685 2.6661 -0.7522 40 1 9.8524 4.1052 0.2967 41 1 10.4971 3.5259 2.5547 42 1 10.3358 1.8421 3.1086 43 1 11.5545 1.8275 0.5611 44 1 14.6951 1.2153 -0.3819 45 1 9.4228 0.1591 1.6250 46 1 9.4390 0.6821 -0.0874 47 1 5.0747 -0.0412 -2.1632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112566359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:20 Heat of formation + Delta-G solvation = 58.312614 kcal Electronic energy + Delta-G solvation = -29280.906681 eV Core-core repulsion = 25429.667535 eV Total energy + Delta-G solvation = -3851.239147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19895 -41.14225 -39.51777 -36.54131 -35.58335 -34.90772 -33.84232 -33.40573 -31.89737 -31.18477 -30.58542 -27.61170 -26.62552 -26.10426 -25.00215 -24.58663 -23.64431 -21.32209 -21.07875 -20.41906 -20.03051 -19.14327 -18.28698 -17.79648 -17.35372 -17.22236 -16.74983 -16.45475 -15.73884 -15.68243 -15.41932 -15.17697 -15.12111 -14.97666 -14.82393 -14.55299 -14.23138 -14.19836 -14.02406 -13.56381 -13.30345 -13.05322 -12.93102 -12.73834 -12.33702 -12.12170 -12.05281 -11.88201 -11.85830 -11.78303 -11.70873 -11.56348 -11.51392 -11.47659 -11.28012 -11.02298 -10.92158 -10.65223 -10.02222 -9.71459 -8.96075 -7.92610 -5.20865 -0.73552 0.06558 1.37157 1.47519 1.48203 1.58224 1.61416 1.72244 2.03717 2.56984 2.86556 2.90030 3.20401 3.39786 3.42096 3.52065 3.58627 3.58827 3.72291 3.90556 4.03330 4.15364 4.17547 4.20085 4.26183 4.40836 4.47982 4.52598 4.57580 4.64454 4.66696 4.69376 4.73082 4.86480 4.89435 4.95057 4.99148 5.02260 5.04878 5.13549 5.20885 5.32045 5.34555 5.42294 5.43884 5.44988 5.53345 6.29068 6.41685 6.45898 6.66277 6.93027 7.35556 8.13369 8.34388 9.31262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024314 B = 0.002473 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.343834 B =11319.039921 C =11668.835398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.217 4.217 3 C 0.232 3.768 4 C -0.137 4.137 5 C -0.034 4.034 6 C -0.178 4.178 7 C 0.577 3.423 8 O -0.584 6.584 9 N -0.604 5.604 10 C 0.091 3.909 11 C -0.089 4.089 12 H 0.123 0.877 13 C -0.106 4.106 14 C -0.118 4.118 15 C -0.105 4.105 16 C -0.066 4.066 17 C 0.173 3.827 18 N -0.744 5.744 19 C -0.236 4.236 20 H 0.081 0.919 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.972 3.028 24 H -0.261 1.261 25 H -0.298 1.298 26 H -0.297 1.297 27 C 0.128 3.872 28 C 0.151 3.849 29 N -0.498 5.498 30 H 0.272 0.728 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.031 0.969 40 H 0.059 0.941 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.372 0.628 44 H 0.248 0.752 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.999 2.125 8.126 31.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.217 4.217 3 C 0.097 3.903 4 C -0.156 4.156 5 C -0.059 4.059 6 C -0.183 4.183 7 C 0.367 3.633 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.030 4.030 11 C -0.109 4.109 12 H 0.141 0.859 13 C -0.143 4.143 14 C -0.155 4.155 15 C -0.143 4.143 16 C -0.068 4.068 17 C 0.046 3.954 18 N -0.386 5.386 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.802 3.198 24 H -0.186 1.186 25 H -0.225 1.225 26 H -0.224 1.224 27 C 0.005 3.995 28 C -0.008 4.008 29 N -0.207 5.207 30 H 0.287 0.713 31 H 0.201 0.799 32 H 0.198 0.802 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -30.102 1.781 6.984 30.953 hybrid contribution 2.281 -0.419 -0.233 2.331 sum -27.821 1.363 6.751 28.661 Atomic orbital electron populations 1.25988 0.96329 0.93081 0.95028 1.19614 0.91546 1.05675 1.04910 1.17212 0.89260 0.94340 0.89458 1.22327 0.93935 0.99983 0.99372 1.22246 0.94579 0.91528 0.97572 1.20817 0.92596 1.08121 0.96815 1.17976 0.86820 0.78215 0.80275 1.90820 1.72733 1.45546 1.37379 1.48839 1.07660 1.50803 1.26161 1.23223 0.99847 0.92512 0.87424 1.22760 0.91849 0.95183 1.01087 0.85880 1.22395 1.00122 0.98689 0.93082 1.22409 0.94290 1.00427 0.98394 1.22262 0.97443 0.98664 0.95910 1.22167 0.95647 0.93193 0.95760 1.20769 0.84023 0.97522 0.93046 1.42590 1.02070 1.80309 1.13658 1.19695 0.85243 1.35259 0.96568 0.90127 1.25576 1.01602 1.03251 0.96848 1.69845 1.28512 1.53474 1.10540 0.85085 0.80114 0.76495 0.78156 1.18559 1.22520 1.22445 1.22268 0.79999 0.96657 1.00578 1.22794 0.88210 0.91550 0.98261 1.67827 1.09458 1.13774 1.29597 0.71258 0.79936 0.80249 0.87041 0.87756 0.89544 0.90109 0.93425 0.91213 0.95017 0.92178 0.95053 0.95080 0.79661 0.94288 0.91353 0.93623 0.82167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 19.25 74.32 1.43 0.64 16 2 C -0.22 -3.53 13.43 30.02 0.40 -3.13 16 3 C 0.23 4.48 6.59 40.58 0.27 4.74 16 4 C -0.14 -1.75 9.77 22.57 0.22 -1.53 16 5 C -0.03 -0.48 7.91 22.69 0.18 -0.30 16 6 C -0.18 -4.03 5.64 -19.96 -0.11 -4.14 16 7 C 0.58 17.14 7.59 86.73 0.66 17.80 16 8 O -0.58 -23.33 17.10 -3.94 -0.07 -23.40 16 9 N -0.60 -15.64 2.52 -811.21 -2.05 -17.69 16 10 C 0.09 1.42 4.74 86.52 0.41 1.83 16 11 C -0.09 -1.65 3.60 -9.29 -0.03 -1.69 16 12 H 0.12 1.76 7.91 -2.39 -0.02 1.74 16 13 C -0.11 -1.81 6.27 31.62 0.20 -1.61 16 14 C -0.12 -2.88 6.52 31.85 0.21 -2.68 16 15 C -0.10 -3.38 5.28 31.62 0.17 -3.21 16 16 C -0.07 -1.95 0.67 -50.55 -0.03 -1.99 16 17 C 0.17 6.29 5.17 86.38 0.45 6.74 16 18 N -0.74 -36.86 5.25 -343.47 -1.80 -38.66 16 19 C -0.24 -12.94 9.99 84.03 0.84 -12.10 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 22 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 23 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 26 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 27 C 0.13 4.24 5.64 86.65 0.49 4.73 16 28 C 0.15 3.73 10.77 85.09 0.92 4.65 16 29 N -0.50 -12.15 10.26 -188.03 -1.93 -14.08 16 30 H 0.27 -0.29 7.80 -4.42 -0.03 -0.33 16 31 H 0.18 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.18 1.46 5.80 -2.91 -0.02 1.44 16 33 H 0.11 1.15 4.88 -2.38 -0.01 1.14 16 34 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 35 H 0.09 1.11 7.45 -2.39 -0.02 1.09 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.29 7.66 -2.38 -0.02 1.27 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.03 1.22 7.47 -2.39 -0.02 1.20 16 40 H 0.06 2.06 7.96 -2.39 -0.02 2.04 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.37 20.30 7.11 -92.71 -0.66 19.64 16 44 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.07 2.37 7.99 -2.39 -0.02 2.36 16 46 H 0.05 1.89 7.23 -2.39 -0.02 1.87 16 47 H 0.16 4.08 7.99 -2.91 -0.02 4.06 16 Total: -1.00 -80.34 385.48 3.92 -76.42 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.33 Total: 25.04 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 7.12 Total: 4.54 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -5.50 Total: -131.14 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.07 Total: -23.40 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.34 3.92 -76.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112566359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.732 kcal (2) G-P(sol) polarization free energy of solvation -80.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds