Wall clock time and date at job start Tue Mar 31 2020 22:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.52999 * 109.46636 * 240.00296 * 2 1 3 5 5 O 1.45199 * 109.47044 * 120.00579 * 2 1 3 6 6 C 1.34635 * 117.00467 * 59.99641 * 5 2 1 7 7 O 1.21507 * 119.99804 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99963 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99871 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.46998 * 35.00640 * 9 8 6 11 11 C 1.53005 * 109.47086 * 155.00334 * 9 8 6 12 12 C 1.53004 * 109.47011 * 295.00233 * 11 9 8 13 13 C 1.50703 * 109.46700 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00025 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99425 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00740 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99707 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47005 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47096 * 119.99629 * 17 15 13 20 20 H 1.48493 * 109.47053 * 239.99780 * 17 15 13 21 21 C 1.50696 * 109.47558 * 275.00759 * 9 8 6 22 22 O 1.21278 * 119.99793 * 359.97438 * 21 9 8 23 23 N 1.34774 * 120.00367 * 180.02562 * 21 9 8 24 24 N 1.40097 * 120.00446 * 179.97438 * 23 21 9 25 25 C 1.35492 * 126.98239 * 179.97438 * 24 23 21 26 26 N 1.30526 * 107.30762 * 179.72211 * 25 24 23 27 27 N 1.28594 * 109.66833 * 0.24133 * 26 25 24 28 28 C 1.30514 * 109.67912 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46942 * 299.99241 * 1 2 3 30 30 H 1.08998 * 109.47592 * 59.99708 * 1 2 3 31 31 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47139 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47474 * 300.00103 * 3 2 1 34 34 H 1.08999 * 109.47063 * 60.00794 * 3 2 1 35 35 H 1.08997 * 109.47349 * 299.99554 * 4 2 1 36 36 H 1.09001 * 109.47346 * 60.00211 * 4 2 1 37 37 H 1.09000 * 109.46979 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99948 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.46899 * 55.00572 * 11 9 8 40 40 H 1.08996 * 109.46690 * 175.00218 * 11 9 8 41 41 H 1.08999 * 109.47065 * 299.99768 * 12 11 9 42 42 H 1.08997 * 109.46679 * 59.99848 * 12 11 9 43 43 H 0.96995 * 120.00703 * 179.97438 * 16 15 13 44 44 H 0.97009 * 119.99660 * 359.97438 * 23 21 9 45 45 H 1.08002 * 126.34907 * 359.97438 * 25 24 23 46 46 H 1.08002 * 126.35158 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0681 -2.6658 2.4165 9 6 1.6740 -4.0669 2.5830 10 1 1.6267 -4.5495 1.6067 11 6 2.7030 -4.7857 3.4579 12 6 4.0493 -4.8274 2.7320 13 6 5.0630 -5.5348 3.5940 14 1 4.7757 -5.9168 4.5625 15 6 6.3572 -5.6942 3.1463 16 7 6.7070 -5.2294 1.9667 17 14 7.6136 -6.5717 4.2144 18 1 6.9725 -6.9975 5.4844 19 1 8.1273 -7.7652 3.4954 20 1 8.7396 -5.6506 4.5122 21 6 0.3204 -4.1332 3.2422 22 8 -0.2579 -3.1107 3.5436 23 7 -0.2470 -5.3287 3.4976 24 7 -1.5051 -5.3903 4.1108 25 6 -2.2022 -6.5073 4.4305 26 7 -3.3174 -6.1225 4.9890 27 7 -3.3593 -4.8380 5.0319 28 6 -2.2732 -4.3449 4.5023 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7216 -1.2491 38 1 2.6277 -2.2369 3.0827 39 1 2.8151 -4.2508 4.4010 40 1 2.3649 -5.8029 3.6551 41 1 3.9372 -5.3623 1.7890 42 1 4.3872 -3.8100 2.5348 43 1 7.6176 -5.3413 1.6519 44 1 0.2158 -6.1465 3.2567 45 1 -1.8909 -7.5272 4.2590 46 1 -2.0292 -3.2978 4.3999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118091922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:15 Heat of formation + Delta-G solvation = -23.094007 kcal Electronic energy + Delta-G solvation = -30313.782120 eV Core-core repulsion = 26048.163655 eV Total energy + Delta-G solvation = -4265.618466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.35035 -42.09046 -41.12587 -38.59192 -37.03469 -36.92300 -35.33097 -34.83596 -33.18509 -32.28934 -31.79352 -29.21531 -28.35111 -28.28607 -26.14035 -24.67563 -23.91331 -23.48761 -22.63777 -21.51590 -21.10446 -20.08568 -19.32722 -18.79716 -18.02318 -17.82371 -17.58397 -17.12317 -16.83697 -16.49354 -16.46314 -16.05879 -15.69536 -15.58366 -15.50236 -15.22429 -14.71342 -14.44263 -14.17206 -13.71991 -13.34209 -13.17383 -13.15321 -12.97850 -12.90722 -12.88772 -12.85671 -12.65314 -12.55360 -12.45770 -12.33090 -11.94774 -11.83272 -11.67075 -11.41173 -11.36365 -11.14994 -11.14608 -10.64718 -10.52293 -10.42426 -10.34590 -8.15564 -6.24758 -0.07774 0.57010 1.10238 1.17798 1.43536 1.47420 1.56571 1.66509 1.71755 2.43419 2.49382 3.08304 3.16713 3.20773 3.57851 3.70804 3.76264 3.81195 3.95682 3.96435 4.05910 4.07333 4.29549 4.47949 4.57359 4.62364 4.73652 4.77459 4.77713 4.84902 4.88582 4.91495 4.99219 5.09099 5.17330 5.29814 5.35678 5.53289 5.57025 5.70959 5.71457 5.82506 5.88872 6.23827 6.29085 6.68235 6.93813 7.26202 7.45293 7.46944 8.95490 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005917 B = 0.004579 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4731.187558 B = 6113.262198 C =10384.500540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.656 3.344 7 O -0.588 6.588 8 N -0.680 5.680 9 C 0.176 3.824 10 H 0.129 0.871 11 C -0.101 4.101 12 C 0.028 3.972 13 C -0.534 4.534 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.952 3.048 18 H -0.259 1.259 19 H -0.284 1.284 20 H -0.287 1.287 21 C 0.517 3.483 22 O -0.536 6.536 23 N -0.498 5.498 24 N -0.278 5.278 25 C 0.166 3.834 26 N -0.322 5.322 27 N -0.324 5.324 28 C 0.166 3.834 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.260 0.740 44 H 0.457 0.543 45 H 0.276 0.724 46 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.267 4.994 -2.521 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.410 3.590 7 O -0.479 6.479 8 N -0.338 5.338 9 C 0.066 3.934 10 H 0.147 0.853 11 C -0.139 4.139 12 C -0.009 4.009 13 C -0.572 4.572 14 H 0.086 0.914 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.778 3.222 18 H -0.183 1.183 19 H -0.210 1.210 20 H -0.214 1.214 21 C 0.303 3.697 22 O -0.409 6.409 23 N -0.253 5.253 24 N -0.055 5.055 25 C -0.122 4.122 26 N -0.161 5.161 27 N -0.165 5.165 28 C -0.123 4.123 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.069 0.931 44 H 0.306 0.694 45 H 0.291 0.709 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -12.202 5.493 -2.223 13.565 hybrid contribution 2.592 -0.520 -0.213 2.652 sum -9.611 4.973 -2.435 11.092 Atomic orbital electron populations 1.22439 0.93807 1.03529 1.03524 1.22463 0.94660 0.92803 0.81367 1.21890 1.02353 0.90564 1.04447 1.22483 1.01471 1.02298 0.97512 1.86318 1.71611 1.22851 1.47592 1.18121 0.77963 0.80942 0.81938 1.90858 1.42067 1.70848 1.44135 1.44293 1.54083 1.11513 1.23951 1.20865 0.88339 0.82046 1.02150 0.85321 1.21923 0.93649 1.00635 0.97726 1.18973 0.90968 0.96087 0.94906 1.21676 0.95325 1.36425 1.03780 0.91391 1.25801 1.00830 0.96569 0.96072 1.70081 1.19191 1.47624 1.20136 0.85587 0.79069 0.78106 0.79390 1.18310 1.21040 1.21369 1.22160 0.88168 0.81785 0.77566 1.90638 1.63491 1.34898 1.51854 1.45431 1.07064 1.12096 1.60731 1.45732 1.08332 1.08642 1.42816 1.27636 0.89359 0.94909 1.00262 1.74292 1.17873 1.04417 1.19564 1.74390 1.19100 1.02613 1.20396 1.27359 0.88256 0.96884 0.99774 0.92243 0.88730 0.92241 0.91471 0.87549 0.91171 0.91975 0.88641 0.92449 0.74410 0.90545 0.87493 0.98010 0.97961 0.93082 0.69424 0.70865 0.75200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.06 8.37 71.98 0.60 -3.46 16 2 C 0.12 2.96 1.13 -10.79 -0.01 2.95 16 3 C -0.14 -2.32 8.85 71.98 0.64 -1.68 16 4 C -0.18 -4.35 8.37 71.98 0.60 -3.74 16 5 O -0.37 -11.11 9.94 -55.45 -0.55 -11.66 16 6 C 0.66 21.33 7.89 129.79 1.02 22.35 16 7 O -0.59 -20.68 11.54 19.82 0.23 -20.45 16 8 N -0.68 -20.06 4.06 -573.73 -2.33 -22.39 16 9 C 0.18 4.59 2.38 44.25 0.11 4.69 16 10 H 0.13 3.39 7.58 -2.38 -0.02 3.37 16 11 C -0.10 -2.79 4.64 30.60 0.14 -2.65 16 12 C 0.03 1.15 4.86 29.85 0.15 1.30 16 13 C -0.53 -25.39 9.11 25.60 0.23 -25.16 16 14 H 0.07 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.01 0.28 5.46 84.65 0.46 0.75 16 16 N -0.93 -51.57 13.29 21.45 0.28 -51.28 16 17 Si 0.95 40.11 29.54 68.60 2.03 42.14 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.52 12.79 7.27 87.66 0.64 13.43 16 22 O -0.54 -16.33 13.56 -3.02 -0.04 -16.37 16 23 N -0.50 -9.16 6.35 -173.54 -1.10 -10.26 16 24 N -0.28 -6.08 3.87 -201.91 -0.78 -6.86 16 25 C 0.17 3.11 13.00 180.11 2.34 5.45 16 26 N -0.32 -8.85 12.21 -59.99 -0.73 -9.58 16 27 N -0.32 -10.00 12.21 -59.99 -0.73 -10.73 16 28 C 0.17 4.57 11.64 180.11 2.10 6.67 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.85 5.88 -2.39 -0.01 1.83 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.42 11.68 8.71 -92.71 -0.81 10.87 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.30 7.43 -2.39 -0.02 2.28 16 41 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.00 0.09 7.75 -2.39 -0.02 0.07 16 43 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.46 4.86 8.19 -213.31 -1.75 3.11 16 45 H 0.28 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.23 6.46 5.95 -2.91 -0.02 6.45 16 Total: -1.00 -73.40 385.62 3.76 -69.64 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: -1.52 Total: 26.92 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 9.02 Total: 20.89 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -5.40 Total: -111.11 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.36 Total: -48.48 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -73.40 3.76 -69.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118091922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.547 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds