Wall clock time and date at job start Tue Mar 31 2020 22:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 C 1.53002 * 109.47160 * 240.00012 * 2 1 3 5 5 O 1.45199 * 109.47018 * 120.00182 * 2 1 3 6 6 C 1.34634 * 117.00493 * 60.00101 * 5 2 1 7 7 O 1.21518 * 119.99317 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00500 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00306 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46581 * 325.00172 * 9 8 6 11 11 C 1.52992 * 109.47005 * 205.00035 * 9 8 6 12 12 C 1.52997 * 109.47482 * 64.99872 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50700 * 109.46969 * 84.99373 * 9 8 6 22 22 O 1.21276 * 120.00273 * 0.02562 * 21 9 8 23 23 N 1.34777 * 119.99557 * 179.97438 * 21 9 8 24 24 N 1.40106 * 119.99777 * 180.02562 * 23 21 9 25 25 C 1.35494 * 126.98101 * 359.69045 * 24 23 21 26 26 N 1.30521 * 107.30916 * 179.89228 * 25 24 23 27 27 N 1.28595 * 109.66933 * 0.37901 * 26 25 24 28 28 C 1.30524 * 109.67626 * 359.75803 * 27 26 25 29 29 H 1.08999 * 109.47049 * 299.99572 * 1 2 3 30 30 H 1.09000 * 109.47231 * 60.00038 * 1 2 3 31 31 H 1.08995 * 109.46609 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46853 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47085 * 300.00052 * 3 2 1 34 34 H 1.09002 * 109.47284 * 60.00026 * 3 2 1 35 35 H 1.08999 * 109.46922 * 300.00063 * 4 2 1 36 36 H 1.09000 * 109.47089 * 59.99864 * 4 2 1 37 37 H 1.08998 * 109.46823 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99459 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47103 * 304.99625 * 11 9 8 40 40 H 1.08998 * 109.46862 * 185.00437 * 11 9 8 41 41 H 1.09002 * 109.47153 * 59.99783 * 12 11 9 42 42 H 1.09001 * 109.46832 * 299.99974 * 12 11 9 43 43 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 44 44 H 0.96996 * 120.00221 * 0.02562 * 23 21 9 45 45 H 1.08000 * 126.34562 * 0.03263 * 25 24 23 46 46 H 1.07996 * 126.34942 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0673 -2.6655 2.4171 9 6 1.6741 -4.0669 2.5831 10 1 0.6654 -4.2096 2.1956 11 6 1.7066 -4.4333 4.0682 12 6 0.6455 -3.6239 4.8165 13 6 0.6771 -3.9852 6.2792 14 1 1.3836 -4.7185 6.6392 15 6 -0.1952 -3.3789 7.1581 16 7 -1.0552 -2.4857 6.7198 17 14 -0.1556 -3.8263 8.9712 18 1 1.1863 -3.5182 9.5279 19 1 -1.1855 -3.0408 9.6975 20 1 -0.4363 -5.2759 9.1297 21 6 2.6324 -4.9504 1.8266 22 8 3.5533 -4.4580 1.2099 23 7 2.4665 -6.2879 1.8361 24 7 3.3577 -7.1093 1.1332 25 6 4.4240 -6.7129 0.3972 26 7 4.9847 -7.7885 -0.0847 27 7 4.3299 -8.8268 0.2986 28 6 3.3248 -8.4611 1.0467 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 2.6269 -2.2365 3.0833 39 1 2.6914 -4.2068 4.4768 40 1 1.5009 -5.4973 4.1844 41 1 -0.3393 -3.8503 4.4078 42 1 0.8513 -2.5598 4.7001 43 1 -1.6692 -2.0594 7.3380 44 1 1.7302 -6.6818 2.3296 45 1 4.7509 -5.6955 0.2404 46 1 2.6008 -9.1147 1.5104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118091923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:19 Heat of formation + Delta-G solvation = -2.338478 kcal Electronic energy + Delta-G solvation = -30312.630397 eV Core-core repulsion = 26047.911958 eV Total energy + Delta-G solvation = -4264.718439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.35092 -40.94919 -40.04194 -37.48616 -35.99056 -35.63548 -34.14663 -33.25983 -32.01528 -30.93477 -30.78175 -27.77880 -27.46094 -27.38853 -24.60067 -23.55346 -22.93729 -22.37995 -21.18694 -20.39406 -20.01351 -19.12911 -18.17729 -17.49063 -16.73804 -16.58565 -16.35483 -16.01613 -15.76092 -15.39592 -15.08467 -14.70218 -14.59254 -14.55029 -14.42864 -14.13129 -13.53611 -13.19176 -12.56450 -12.47051 -12.30138 -12.25985 -12.00784 -11.93556 -11.92549 -11.89530 -11.52451 -11.33557 -11.24416 -11.08276 -10.92733 -10.69996 -10.54121 -10.34165 -10.31006 -9.99018 -9.81540 -9.62311 -9.45031 -9.40530 -9.15183 -8.55870 -6.20706 -4.25823 0.87796 1.55248 2.17088 2.21766 2.68175 2.92088 3.20043 3.26508 3.27433 3.46373 4.13422 4.14814 4.29841 4.41619 4.67782 4.72802 4.86378 4.88283 4.94512 5.04845 5.13299 5.16621 5.23861 5.40240 5.48699 5.55415 5.63115 5.70388 5.77028 5.83545 5.86649 5.92884 6.05506 6.13867 6.27578 6.38683 6.50006 6.55969 6.64383 6.75822 7.36537 7.42503 7.46411 7.64443 7.74508 8.11842 8.45025 8.47437 8.79940 9.40374 10.89767 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005918 B = 0.004578 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4729.989147 B = 6114.437573 C =10384.880965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.359 6.359 6 C 0.663 3.337 7 O -0.572 6.572 8 N -0.678 5.678 9 C 0.168 3.832 10 H 0.129 0.871 11 C -0.119 4.119 12 C 0.025 3.975 13 C -0.531 4.531 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.512 3.488 22 O -0.511 6.511 23 N -0.517 5.517 24 N -0.274 5.274 25 C 0.175 3.825 26 N -0.297 5.297 27 N -0.283 5.283 28 C 0.139 3.861 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.022 0.978 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.440 0.560 45 H 0.236 0.764 46 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 0.890 -11.338 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.239 4.239 5 O -0.274 6.274 6 C 0.417 3.583 7 O -0.461 6.461 8 N -0.336 5.336 9 C 0.058 3.942 10 H 0.146 0.854 11 C -0.157 4.157 12 C -0.012 4.012 13 C -0.569 4.569 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.298 3.702 22 O -0.382 6.382 23 N -0.271 5.271 24 N -0.051 5.051 25 C -0.112 4.112 26 N -0.138 5.138 27 N -0.124 5.124 28 C -0.149 4.149 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.284 0.716 45 H 0.252 0.748 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.679 0.362 -12.928 13.753 hybrid contribution -1.182 0.578 2.281 2.633 sum 3.497 0.940 -10.647 11.246 Atomic orbital electron populations 1.22526 0.93895 1.05233 1.02501 1.22054 0.94458 0.91441 0.82050 1.21858 1.02191 0.92636 1.03102 1.22503 1.01556 1.03485 0.96379 1.86306 1.71289 1.23463 1.46342 1.17930 0.78235 0.80486 0.81697 1.90873 1.41365 1.70654 1.43219 1.44199 1.55601 1.10044 1.23771 1.21004 0.96733 0.78325 0.98149 0.85377 1.22164 1.03743 1.02066 0.87701 1.19118 0.92334 0.95275 0.94462 1.21072 1.19197 1.24121 0.92556 0.92539 1.24987 0.95242 0.94845 0.98961 1.69936 1.20762 1.26698 1.35328 0.86648 0.77870 0.78557 0.84885 1.20167 1.21211 1.20170 1.22474 0.87102 0.79848 0.80809 1.90629 1.32098 1.73181 1.42340 1.45701 1.27308 1.02966 1.51097 1.45731 1.19570 1.04488 1.35352 1.27451 0.86370 1.03073 0.94351 1.74458 1.22955 0.94718 1.21648 1.74358 1.04596 1.21103 1.12360 1.26687 1.03156 0.80767 1.04251 0.91836 0.91359 0.89294 0.91526 0.90285 0.91290 0.89418 0.91360 0.92210 0.74698 0.91133 0.90552 0.95956 0.95617 0.92672 0.71613 0.74774 0.75866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 2 C 0.14 1.68 1.13 -90.62 -0.10 1.58 16 3 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16 4 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 5 O -0.36 -5.34 9.94 -40.31 -0.40 -5.74 16 6 C 0.66 10.56 7.89 54.05 0.43 10.98 16 7 O -0.57 -9.82 11.54 -19.29 -0.22 -10.04 16 8 N -0.68 -9.93 4.06 -59.87 -0.24 -10.17 16 9 C 0.17 2.27 2.38 -69.08 -0.16 2.10 16 10 H 0.13 1.73 7.58 -51.93 -0.39 1.33 16 11 C -0.12 -1.74 4.64 -26.74 -0.12 -1.86 16 12 C 0.03 0.52 4.86 -27.88 -0.14 0.39 16 13 C -0.53 -12.89 9.11 -34.44 -0.31 -13.20 16 14 H 0.06 1.32 7.74 -52.49 -0.41 0.91 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 17 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.51 6.68 7.27 -10.98 -0.08 6.60 16 22 O -0.51 -7.93 13.56 5.56 0.08 -7.85 16 23 N -0.52 -5.42 6.35 31.22 0.20 -5.22 16 24 N -0.27 -3.29 3.87 -15.17 -0.06 -3.35 16 25 C 0.18 2.46 11.64 -89.94 -1.05 1.42 16 26 N -0.30 -4.62 12.21 29.69 0.36 -4.26 16 27 N -0.28 -4.09 12.21 29.69 0.36 -3.73 16 28 C 0.14 1.51 13.00 -89.94 -1.17 0.34 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.42 5.74 8.71 -40.82 -0.36 5.38 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.95 7.43 -51.93 -0.39 0.57 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.03 0.58 7.75 -51.93 -0.40 0.17 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.44 3.14 8.19 -182.60 -1.50 1.64 16 45 H 0.24 3.26 5.95 -52.49 -0.31 2.94 16 46 H 0.23 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -32.89 385.62 -7.98 -40.86 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.72 Total: 7.43 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -1.86 Total: 5.07 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 1.36 Total: -50.29 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.55 Total: -23.63 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.89 -7.98 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118091923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.526 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds