Wall clock time and date at job start Tue Mar 31 2020 22:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 C 1.53002 * 109.47160 * 240.00012 * 2 1 3 5 5 O 1.45199 * 109.47018 * 120.00182 * 2 1 3 6 6 C 1.34634 * 117.00493 * 60.00101 * 5 2 1 7 7 O 1.21518 * 119.99317 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00500 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00306 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.46581 * 325.00172 * 9 8 6 11 11 C 1.52992 * 109.47005 * 205.00035 * 9 8 6 12 12 C 1.52997 * 109.47482 * 64.99872 * 11 9 8 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.50700 * 109.46969 * 84.99373 * 9 8 6 22 22 O 1.21276 * 120.00273 * 0.02562 * 21 9 8 23 23 N 1.34777 * 119.99557 * 179.97438 * 21 9 8 24 24 N 1.40106 * 119.99777 * 180.02562 * 23 21 9 25 25 C 1.35494 * 126.98101 * 359.69045 * 24 23 21 26 26 N 1.30521 * 107.30916 * 179.89228 * 25 24 23 27 27 N 1.28595 * 109.66933 * 0.37901 * 26 25 24 28 28 C 1.30524 * 109.67626 * 359.75803 * 27 26 25 29 29 H 1.08999 * 109.47049 * 299.99572 * 1 2 3 30 30 H 1.09000 * 109.47231 * 60.00038 * 1 2 3 31 31 H 1.08995 * 109.46609 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46853 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47085 * 300.00052 * 3 2 1 34 34 H 1.09002 * 109.47284 * 60.00026 * 3 2 1 35 35 H 1.08999 * 109.46922 * 300.00063 * 4 2 1 36 36 H 1.09000 * 109.47089 * 59.99864 * 4 2 1 37 37 H 1.08998 * 109.46823 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99459 * 359.97438 * 8 6 5 39 39 H 1.09002 * 109.47103 * 304.99625 * 11 9 8 40 40 H 1.08998 * 109.46862 * 185.00437 * 11 9 8 41 41 H 1.09002 * 109.47153 * 59.99783 * 12 11 9 42 42 H 1.09001 * 109.46832 * 299.99974 * 12 11 9 43 43 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 44 44 H 0.96996 * 120.00221 * 0.02562 * 23 21 9 45 45 H 1.08000 * 126.34562 * 0.03263 * 25 24 23 46 46 H 1.07996 * 126.34942 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0673 -2.6655 2.4171 9 6 1.6741 -4.0669 2.5831 10 1 0.6654 -4.2096 2.1956 11 6 1.7066 -4.4333 4.0682 12 6 0.6455 -3.6239 4.8165 13 6 0.6771 -3.9852 6.2792 14 1 1.3836 -4.7185 6.6392 15 6 -0.1952 -3.3789 7.1581 16 7 -1.0552 -2.4857 6.7198 17 14 -0.1556 -3.8263 8.9712 18 1 1.1863 -3.5182 9.5279 19 1 -1.1855 -3.0408 9.6975 20 1 -0.4363 -5.2759 9.1297 21 6 2.6324 -4.9504 1.8266 22 8 3.5533 -4.4580 1.2099 23 7 2.4665 -6.2879 1.8361 24 7 3.3577 -7.1093 1.1332 25 6 4.4240 -6.7129 0.3972 26 7 4.9847 -7.7885 -0.0847 27 7 4.3299 -8.8268 0.2986 28 6 3.3248 -8.4611 1.0467 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 2.6269 -2.2365 3.0833 39 1 2.6914 -4.2068 4.4768 40 1 1.5009 -5.4973 4.1844 41 1 -0.3393 -3.8503 4.4078 42 1 0.8513 -2.5598 4.7001 43 1 -1.6692 -2.0594 7.3380 44 1 1.7302 -6.6818 2.3296 45 1 4.7509 -5.6955 0.2404 46 1 2.6008 -9.1147 1.5104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118091923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:18 Heat of formation + Delta-G solvation = -22.968445 kcal Electronic energy + Delta-G solvation = -30313.524979 eV Core-core repulsion = 26047.911958 eV Total energy + Delta-G solvation = -4265.613021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.35047 -42.08993 -41.12605 -38.59156 -37.03451 -36.92254 -35.32991 -34.83478 -33.18540 -32.28946 -31.79365 -29.21397 -28.35123 -28.28570 -26.13668 -24.67536 -23.91360 -23.48745 -22.63581 -21.51659 -21.10449 -20.08629 -19.32703 -18.79408 -18.01761 -17.82363 -17.58433 -17.12300 -16.83660 -16.49789 -16.46270 -16.06147 -15.69596 -15.58349 -15.50210 -15.22382 -14.70954 -14.43901 -14.16080 -13.72651 -13.34257 -13.17321 -13.15402 -12.97849 -12.90656 -12.85630 -12.82580 -12.64426 -12.56217 -12.51514 -12.33067 -11.95574 -11.81763 -11.67093 -11.41069 -11.36421 -11.17598 -11.14867 -10.64739 -10.50606 -10.42490 -10.34518 -8.15076 -6.24445 -0.07850 0.56982 1.10158 1.17772 1.46457 1.47477 1.54247 1.66463 1.71705 2.43722 2.49417 3.08244 3.16660 3.21012 3.57831 3.70819 3.76275 3.81196 3.95642 3.96409 4.05875 4.07301 4.29501 4.47921 4.57363 4.62300 4.73632 4.77532 4.77695 4.84925 4.88600 4.91461 4.99191 5.09113 5.17295 5.29792 5.35638 5.53266 5.56704 5.70899 5.71532 5.82477 5.88880 6.23926 6.29062 6.68171 6.93654 7.26165 7.45459 7.46898 8.95565 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.005918 B = 0.004578 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4729.989147 B = 6114.437573 C =10384.880965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.136 4.136 4 C -0.176 4.176 5 O -0.369 6.369 6 C 0.656 3.344 7 O -0.588 6.588 8 N -0.680 5.680 9 C 0.176 3.824 10 H 0.129 0.871 11 C -0.101 4.101 12 C 0.029 3.971 13 C -0.536 4.536 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.952 3.048 18 H -0.271 1.271 19 H -0.293 1.293 20 H -0.266 1.266 21 C 0.517 3.483 22 O -0.536 6.536 23 N -0.498 5.498 24 N -0.278 5.278 25 C 0.166 3.834 26 N -0.324 5.324 27 N -0.322 5.322 28 C 0.166 3.834 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.419 0.581 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.260 0.740 44 H 0.457 0.543 45 H 0.232 0.768 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 0.055 -11.052 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.193 4.193 4 C -0.233 4.233 5 O -0.284 6.284 6 C 0.410 3.590 7 O -0.479 6.479 8 N -0.338 5.338 9 C 0.066 3.934 10 H 0.147 0.853 11 C -0.139 4.139 12 C -0.009 4.009 13 C -0.574 4.574 14 H 0.086 0.914 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.219 1.219 20 H -0.191 1.191 21 C 0.303 3.697 22 O -0.409 6.409 23 N -0.253 5.253 24 N -0.055 5.055 25 C -0.123 4.123 26 N -0.165 5.165 27 N -0.161 5.161 28 C -0.122 4.122 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.069 0.931 44 H 0.306 0.694 45 H 0.248 0.752 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 4.811 -0.521 -12.630 13.526 hybrid contribution -1.257 0.834 2.161 2.635 sum 3.554 0.314 -10.470 11.061 Atomic orbital electron populations 1.22483 0.94012 1.03731 1.03538 1.22466 0.94605 0.92828 0.81397 1.21892 1.02434 0.90559 1.04368 1.22438 1.01450 1.02068 0.97345 1.86318 1.71416 1.22960 1.47676 1.18123 0.78171 0.80897 0.81775 1.90861 1.42126 1.71097 1.43833 1.44294 1.55428 1.10557 1.23560 1.20864 0.96999 0.78050 0.97484 0.85323 1.21920 1.01752 1.02726 0.87538 1.18961 0.93258 0.94877 0.93770 1.21619 1.18327 1.23314 0.94182 0.91400 1.25803 0.95316 0.95059 1.03052 1.70072 1.22019 1.28394 1.36505 0.85694 0.77693 0.78559 0.80237 1.19596 1.21890 1.19063 1.22160 0.86436 0.80530 0.80549 1.90637 1.32952 1.73914 1.43371 1.45432 1.27225 1.02221 1.50444 1.45733 1.19415 1.05000 1.35371 1.27358 0.87194 1.02744 0.94978 1.74396 1.24056 0.95405 1.22638 1.74289 1.06267 1.21284 1.14307 1.27634 1.02228 0.80447 1.01855 0.92442 0.88647 0.91973 0.91174 0.87550 0.91465 0.92236 0.88736 0.92238 0.74413 0.90549 0.87490 0.98035 0.97984 0.93075 0.69428 0.75203 0.70869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.35 8.37 71.98 0.60 -3.75 16 2 C 0.12 2.96 1.13 -10.79 -0.01 2.95 16 3 C -0.14 -2.32 8.85 71.98 0.64 -1.68 16 4 C -0.18 -4.06 8.37 71.98 0.60 -3.46 16 5 O -0.37 -11.11 9.94 -55.44 -0.55 -11.66 16 6 C 0.66 21.34 7.89 129.79 1.02 22.36 16 7 O -0.59 -20.69 11.54 19.79 0.23 -20.47 16 8 N -0.68 -20.08 4.06 -573.74 -2.33 -22.41 16 9 C 0.18 4.59 2.38 44.24 0.11 4.70 16 10 H 0.13 3.39 7.58 -2.39 -0.02 3.37 16 11 C -0.10 -2.80 4.64 30.59 0.14 -2.65 16 12 C 0.03 1.18 4.86 29.85 0.15 1.33 16 13 C -0.54 -25.52 9.11 25.60 0.23 -25.29 16 14 H 0.07 3.01 7.74 -2.91 -0.02 2.99 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -51.60 13.29 21.45 0.28 -51.31 16 17 Si 0.95 40.06 29.54 68.60 2.03 42.09 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 21 C 0.52 12.80 7.27 87.66 0.64 13.44 16 22 O -0.54 -16.34 13.56 -3.02 -0.04 -16.38 16 23 N -0.50 -9.17 6.35 -173.54 -1.10 -10.27 16 24 N -0.28 -6.09 3.87 -201.91 -0.78 -6.87 16 25 C 0.17 4.57 11.64 180.11 2.10 6.67 16 26 N -0.32 -10.00 12.21 -59.99 -0.73 -10.73 16 27 N -0.32 -8.85 12.21 -59.99 -0.73 -9.58 16 28 C 0.17 3.11 13.00 180.11 2.34 5.46 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.85 5.88 -2.39 -0.01 1.83 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.74 5.88 -2.39 -0.01 1.72 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.42 11.69 8.71 -92.71 -0.81 10.89 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.30 7.43 -2.39 -0.02 2.29 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.00 0.08 7.75 -2.39 -0.02 0.06 16 43 H 0.26 13.92 8.31 -92.71 -0.77 13.14 16 44 H 0.46 4.87 8.19 -213.32 -1.75 3.13 16 45 H 0.23 6.46 5.95 -2.91 -0.02 6.45 16 46 H 0.28 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -73.31 385.62 3.76 -69.55 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -1.52 Total: 27.20 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 9.02 Total: 20.84 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -5.40 Total: -111.17 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.36 Total: -48.51 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -73.31 3.76 -69.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118091923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.584 kcal (2) G-P(sol) polarization free energy of solvation -73.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds