Wall clock time and date at job start Tue Mar 31 2020 22:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46865 * 2 1 4 4 C 1.53002 * 109.47078 * 240.00029 * 2 1 3 5 5 O 1.45197 * 109.47042 * 119.99895 * 2 1 3 6 6 C 1.34639 * 117.00184 * 60.00200 * 5 2 1 7 7 O 1.21513 * 119.99613 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00107 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99919 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47158 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47446 * 180.02562 * 10 9 8 12 12 N 1.46493 * 109.47219 * 179.97438 * 11 10 9 13 13 C 1.34846 * 126.59136 * 125.00151 * 12 11 10 14 14 C 1.36666 * 106.82499 * 180.25981 * 13 12 11 15 15 C 1.47438 * 125.77795 * 179.71616 * 14 13 12 16 16 O 1.21620 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99816 * 180.02562 * 15 14 13 18 18 C 1.36962 * 119.99853 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99706 * 359.97438 * 18 17 15 20 20 C 1.38984 * 120.00026 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00259 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00108 * 359.97438 * 20 18 17 23 23 H 1.48495 * 109.47176 * 89.99986 * 22 20 18 24 24 H 1.48506 * 109.47406 * 210.00400 * 22 20 18 25 25 H 1.48507 * 109.47111 * 330.00195 * 22 20 18 26 26 N 1.34423 * 108.44090 * 359.57096 * 14 13 12 27 27 N 1.28758 * 109.53262 * 0.43731 * 26 14 13 28 28 H 1.09004 * 109.47224 * 299.99567 * 1 2 3 29 29 H 1.09002 * 109.47521 * 60.00143 * 1 2 3 30 30 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47286 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47243 * 299.99779 * 3 2 1 33 33 H 1.08996 * 109.47459 * 60.00232 * 3 2 1 34 34 H 1.08996 * 109.46838 * 299.99625 * 4 2 1 35 35 H 1.09002 * 109.47086 * 59.99561 * 4 2 1 36 36 H 1.08999 * 109.46541 * 180.02562 * 4 2 1 37 37 H 0.96999 * 120.00286 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.47121 * 59.99887 * 9 8 6 39 39 H 1.09002 * 109.46639 * 299.99693 * 9 8 6 40 40 H 1.09003 * 109.47465 * 59.99074 * 10 9 8 41 41 H 1.09001 * 109.46880 * 299.99831 * 10 9 8 42 42 H 1.08994 * 109.47322 * 59.99057 * 11 10 9 43 43 H 1.09001 * 109.46891 * 299.99761 * 11 10 9 44 44 H 1.08002 * 126.58436 * 359.97438 * 13 12 11 45 45 H 0.96997 * 120.00442 * 359.97438 * 17 15 14 46 46 H 0.96999 * 120.00443 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9509 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4167 9 6 1.6749 -4.0671 2.5826 10 6 2.2749 -4.6151 3.8791 11 6 1.8649 -6.0789 4.0521 12 7 2.4399 -6.6036 5.2931 13 6 1.7683 -7.1878 6.3061 14 6 2.6938 -7.5168 7.2565 15 6 2.4095 -8.1733 8.5456 16 8 1.2667 -8.4691 8.8385 17 7 3.4159 -8.4446 9.4000 18 6 3.1517 -9.0540 10.5979 19 1 2.1369 -9.3167 10.8578 20 6 4.1896 -9.3343 11.4787 21 7 3.9363 -9.9194 12.6277 22 14 5.9449 -8.8805 11.0287 23 1 6.2397 -7.5067 11.5090 24 1 6.8830 -9.8396 11.6656 25 1 6.1075 -8.9347 9.5535 26 7 3.9074 -7.1433 6.8154 27 7 3.7941 -6.5951 5.6559 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2489 37 1 2.6276 -2.2368 3.0829 38 1 2.0414 -4.6498 1.7375 39 1 0.5881 -4.1366 2.6279 40 1 1.9081 -4.0322 4.7240 41 1 3.3618 -4.5455 3.8343 42 1 2.2320 -6.6614 3.2072 43 1 0.7780 -6.1489 4.0968 44 1 0.7032 -7.3584 6.3585 45 1 4.3273 -8.2083 9.1667 46 1 4.6607 -10.1153 13.2424 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136560368.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:20 Heat of formation + Delta-G solvation = -53.420379 kcal Electronic energy + Delta-G solvation = -27979.890694 eV Core-core repulsion = 23712.957178 eV Total energy + Delta-G solvation = -4266.933516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.11886 -41.79478 -39.99653 -38.73702 -37.10952 -36.11892 -35.64663 -34.87050 -33.80105 -32.49148 -31.59801 -28.35089 -28.29327 -27.86946 -26.95959 -24.38564 -23.90889 -22.82301 -22.56915 -21.31474 -20.98843 -20.49397 -19.17646 -18.65833 -17.64532 -17.45883 -17.17687 -17.03812 -16.84197 -16.25012 -16.13009 -15.74489 -15.51076 -15.37933 -15.35086 -15.20521 -14.75177 -14.42085 -14.23312 -14.02939 -13.74602 -13.34993 -13.21952 -13.05431 -13.03959 -12.92925 -12.85813 -12.79644 -12.55244 -12.46454 -12.31926 -12.29190 -12.01649 -11.94061 -11.60276 -11.38493 -11.28403 -11.11353 -10.78123 -10.34690 -10.24084 -10.18858 -8.48137 -6.05425 0.21974 0.75153 1.02592 1.30181 1.32317 1.35449 1.42380 1.74892 2.18419 2.35736 2.76664 3.09830 3.18809 3.35626 3.50341 3.75545 3.77718 3.80826 3.86663 3.95735 4.01405 4.11851 4.13902 4.35546 4.48912 4.51837 4.61716 4.62793 4.75561 4.77750 4.80965 4.85926 4.88680 4.99278 5.03754 5.11736 5.23789 5.28905 5.36472 5.47991 5.53986 5.58518 5.88633 6.35795 6.47319 6.75441 6.97972 7.31649 7.32302 7.80670 8.67745 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.027594 B = 0.001560 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.471662 B =17948.746103 C =18360.585383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.125 3.875 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.372 6.372 6 C 0.645 3.355 7 O -0.591 6.591 8 N -0.705 5.705 9 C 0.146 3.854 10 C -0.136 4.136 11 C 0.117 3.883 12 N -0.346 5.346 13 C 0.105 3.895 14 C -0.104 4.104 15 C 0.527 3.473 16 O -0.614 6.614 17 N -0.569 5.569 18 C -0.329 4.329 19 H 0.073 0.927 20 C 0.001 3.999 21 N -0.916 5.916 22 Si 0.948 3.052 23 H -0.255 1.255 24 H -0.264 1.264 25 H -0.246 1.246 26 N -0.242 5.242 27 N -0.081 5.081 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.416 0.584 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.145 0.855 44 H 0.235 0.765 45 H 0.390 0.610 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 22.447 -30.732 38.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.482 6.482 8 N -0.365 5.365 9 C 0.023 3.977 10 C -0.174 4.174 11 C -0.002 4.002 12 N -0.133 5.133 13 C -0.052 4.052 14 C -0.244 4.244 15 C 0.314 3.686 16 O -0.499 6.499 17 N -0.206 5.206 18 C -0.458 4.458 19 H 0.091 0.909 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.768 3.232 23 H -0.180 1.180 24 H -0.188 1.188 25 H -0.170 1.170 26 N -0.116 5.116 27 N -0.061 5.061 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.252 0.748 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.140 0.860 43 H 0.163 0.837 44 H 0.251 0.749 45 H 0.225 0.775 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.605 22.373 -31.257 38.527 hybrid contribution 0.194 -0.245 0.909 0.961 sum -2.411 22.128 -30.347 37.635 Atomic orbital electron populations 1.22476 0.93904 1.03780 1.03532 1.22390 0.94596 0.92599 0.81508 1.21894 1.02409 0.90911 1.04266 1.22473 1.01587 1.02303 0.97317 1.86317 1.71595 1.23317 1.47414 1.18257 0.78773 0.80809 0.82365 1.90905 1.42159 1.70983 1.44185 1.44690 1.55432 1.12934 1.23430 1.21190 1.00735 0.78551 0.97191 1.21929 1.03133 0.94400 0.97980 1.22334 1.01541 0.94717 0.81607 1.50629 1.06481 1.40048 1.16100 1.23663 1.01140 0.94190 0.86204 1.21459 0.90344 1.13143 0.99455 1.16862 0.84842 0.83495 0.83416 1.90626 1.21911 1.59520 1.77878 1.41928 1.08955 1.53310 1.16433 1.19129 0.96562 1.36712 0.93442 0.90933 1.25925 1.03481 0.95923 0.94718 1.69746 1.35377 1.40858 1.09544 0.85588 0.77666 0.79783 0.80121 1.17969 1.18799 1.17024 1.74612 1.22886 1.08964 1.05108 1.81740 0.95213 1.21137 1.08046 0.92065 0.89253 0.91696 0.91295 0.88068 0.91314 0.91720 0.89245 0.92054 0.74778 0.90190 0.89848 0.89958 0.89871 0.86032 0.83691 0.74909 0.77462 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.37 71.98 0.60 -1.65 16 2 C 0.13 1.59 1.13 -10.79 -0.01 1.58 16 3 C -0.14 -1.03 8.85 71.98 0.64 -0.39 16 4 C -0.18 -2.25 8.37 71.98 0.60 -1.65 16 5 O -0.37 -6.01 9.94 -55.48 -0.55 -6.57 16 6 C 0.64 11.09 8.06 129.79 1.05 12.13 16 7 O -0.59 -12.78 11.88 19.80 0.24 -12.55 16 8 N -0.70 -8.12 5.56 -590.84 -3.29 -11.41 16 9 C 0.15 1.17 5.67 86.38 0.49 1.66 16 10 C -0.14 -1.07 5.53 30.59 0.17 -0.90 16 11 C 0.12 0.98 6.54 86.38 0.56 1.54 16 12 N -0.35 -7.11 3.69 -347.04 -1.28 -8.39 16 13 C 0.11 2.72 11.28 83.86 0.95 3.66 16 14 C -0.10 -3.92 6.99 40.80 0.29 -3.64 16 15 C 0.53 25.78 7.77 86.67 0.67 26.45 16 16 O -0.61 -33.65 16.44 -4.10 -0.07 -33.71 16 17 N -0.57 -29.54 5.08 -309.96 -1.58 -31.11 16 18 C -0.33 -19.72 10.16 84.07 0.85 -18.86 16 19 H 0.07 4.97 7.38 -2.91 -0.02 4.95 16 20 C 0.00 0.04 5.50 84.94 0.47 0.51 16 21 N -0.92 -54.76 13.96 21.67 0.30 -54.45 16 22 Si 0.95 41.38 27.74 68.60 1.90 43.28 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.25 -10.06 6.52 99.48 0.65 -9.41 16 26 N -0.24 -8.87 12.04 -50.00 -0.60 -9.47 16 27 N -0.08 -2.37 13.64 37.02 0.51 -1.86 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.15 5.88 -2.38 -0.01 1.13 16 31 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 1.14 5.88 -2.39 -0.01 1.13 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.42 3.53 8.58 -92.71 -0.80 2.74 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.15 0.27 8.08 -2.39 -0.02 0.25 16 44 H 0.23 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.39 18.50 5.45 -92.71 -0.50 18.00 16 46 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -83.16 390.24 2.57 -80.59 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -0.33 Total: 25.21 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: 7.33 Total: 20.45 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -5.94 Total: -116.70 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -0.38 Total: -52.83 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.90 Total: 43.28 kcal Total: -83.16 2.57 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136560368.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.168 kcal (2) G-P(sol) polarization free energy of solvation -83.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds