Wall clock time and date at job start Tue Mar 31 2020 22:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30643 * 128.64417 * 2 1 4 4 O 1.20842 * 109.61545 * 180.02562 * 3 2 1 5 5 N 1.20899 * 115.91137 * 359.73562 * 4 3 2 6 6 C 1.31609 * 109.18098 * 0.42848 * 5 4 3 7 7 C 1.48272 * 128.71571 * 179.88437 * 6 5 4 8 8 O 1.21496 * 119.99974 * 179.67691 * 7 6 5 9 9 N 1.34781 * 119.99930 * 359.67228 * 7 6 5 10 10 C 1.46499 * 119.99874 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47391 * 325.00213 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00543 * 10 9 7 13 13 C 1.53002 * 109.46799 * 205.00309 * 10 9 7 14 14 C 1.52997 * 109.47469 * 65.00172 * 13 10 9 15 15 H 1.09009 * 109.46733 * 54.99988 * 14 13 10 16 16 C 1.52993 * 109.47392 * 174.99649 * 14 13 10 17 17 N 1.46902 * 109.47110 * 295.00218 * 14 13 10 18 18 C 1.46899 * 110.99939 * 154.99761 * 17 14 13 19 19 C 1.50703 * 109.46895 * 179.97438 * 18 17 14 20 20 O 1.21297 * 119.99703 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00094 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99955 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00137 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99975 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99868 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99975 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47267 * 60.00024 * 26 24 22 28 28 H 1.48501 * 109.46918 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47245 * 299.99346 * 26 24 22 30 30 H 1.08998 * 109.46931 * 269.97700 * 1 2 3 31 31 H 1.09007 * 109.46948 * 29.97154 * 1 2 3 32 32 H 1.09001 * 109.47585 * 149.97301 * 1 2 3 33 33 H 0.97002 * 119.99716 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 35 35 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 36 36 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 37 37 H 1.09008 * 109.46873 * 185.00266 * 13 10 9 38 38 H 1.08997 * 109.47047 * 304.99955 * 13 10 9 39 39 H 1.08993 * 109.47489 * 180.02562 * 16 14 13 40 40 H 1.09005 * 109.47082 * 300.00404 * 16 14 13 41 41 H 1.08999 * 109.46971 * 59.99914 * 16 14 13 42 42 H 1.00900 * 110.99450 * 278.95559 * 17 14 13 43 43 H 1.08996 * 109.47303 * 299.99337 * 18 17 14 44 44 H 1.09000 * 109.47295 * 60.00113 * 18 17 14 45 45 H 0.97002 * 120.00081 * 359.97438 * 21 19 18 46 46 H 0.97000 * 120.00187 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4653 0.6264 -0.0005 5 7 3.6101 -0.5739 0.0041 6 6 2.4279 -1.1522 -0.0006 7 6 2.1032 -2.5989 -0.0002 8 8 0.9435 -2.9612 0.0008 9 7 3.0945 -3.5121 -0.0009 10 6 2.7736 -4.9415 0.0001 11 1 1.8734 -5.1114 0.5907 12 6 2.5377 -5.4122 -1.4365 13 6 3.9383 -5.7251 0.6088 14 6 4.0945 -5.3443 2.0823 15 1 3.1480 -5.5002 2.6001 16 6 5.1758 -6.2168 2.7228 17 7 4.4815 -3.9309 2.1845 18 6 4.0799 -3.3674 3.4803 19 6 4.4933 -1.9198 3.5484 20 8 5.0656 -1.4078 2.6095 21 7 4.2270 -1.1941 4.6524 22 6 4.6025 0.1230 4.7140 23 1 5.1122 0.5789 3.8781 24 6 4.3284 0.8710 5.8525 25 7 3.7088 0.3161 6.8698 26 14 4.8408 2.6654 5.9368 27 1 4.1790 3.4210 4.8431 28 1 4.4354 3.2348 7.2470 29 1 6.3148 2.7669 5.7873 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.0204 -3.2228 -0.0014 34 1 1.7080 -4.8539 -1.8701 35 1 3.4379 -5.2423 -2.0270 36 1 2.2985 -6.4756 -1.4356 37 1 3.7384 -6.7937 0.5288 38 1 4.8566 -5.4862 0.0725 39 1 5.2867 -5.9459 3.7726 40 1 4.8885 -7.2656 2.6469 41 1 6.1222 -6.0610 2.2050 42 1 5.4721 -3.8153 2.0312 43 1 2.9980 -3.4422 3.5894 44 1 4.5653 -3.9216 4.2836 45 1 3.7689 -1.6035 5.4031 46 1 3.5171 0.8384 7.6644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146743301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:54 Heat of formation + Delta-G solvation = 37.042814 kcal Electronic energy + Delta-G solvation = -31286.143978 eV Core-core repulsion = 27023.133240 eV Total energy + Delta-G solvation = -4263.010738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.40124 -39.74647 -38.41886 -37.26152 -35.12543 -34.69011 -34.23754 -33.84267 -31.76054 -31.17382 -30.23166 -29.11490 -26.97514 -26.20647 -25.51033 -23.92939 -22.31848 -21.69621 -20.85478 -20.25870 -19.21457 -18.55247 -18.08060 -17.86468 -16.79868 -16.28789 -16.01102 -15.27841 -14.97083 -14.71852 -14.55690 -14.23203 -14.09869 -13.79703 -13.65549 -13.52109 -13.33948 -13.21305 -13.08572 -12.78814 -12.50442 -12.25943 -12.14807 -11.93097 -11.70284 -11.55602 -11.47840 -11.39656 -11.32890 -11.00509 -10.88179 -10.81133 -10.68353 -10.42517 -10.19173 -10.09029 -9.97913 -9.46286 -8.96983 -8.40206 -8.01741 -7.92707 -6.39570 -3.80032 1.25392 1.68663 2.96398 3.22129 3.27418 3.32408 3.32462 3.75308 3.83144 3.93111 4.08140 4.23369 4.35206 4.50713 4.86783 5.04192 5.07945 5.13139 5.17829 5.22058 5.27528 5.30477 5.40761 5.43357 5.46186 5.56070 5.63159 5.65560 5.73410 5.74010 5.76467 5.84902 5.96630 6.03656 6.06385 6.08642 6.16923 6.27813 6.62864 7.17564 7.57030 7.61184 7.68443 8.07860 8.29243 8.63054 8.89137 9.20252 9.56543 10.07544 10.78124 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009507 B = 0.004741 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.626998 B = 5904.052075 C = 8032.232191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.051 3.949 3 N -0.363 5.363 4 O 0.345 5.655 5 N -0.280 5.280 6 C -0.051 4.051 7 C 0.615 3.385 8 O -0.538 6.538 9 N -0.673 5.673 10 C 0.152 3.848 11 H 0.086 0.914 12 C -0.165 4.165 13 C -0.116 4.116 14 C 0.080 3.920 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.660 5.660 18 C 0.052 3.948 19 C 0.437 3.563 20 O -0.570 6.570 21 N -0.565 5.565 22 C -0.296 4.296 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.903 5.903 26 Si 0.927 3.073 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.348 0.652 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.390 0.610 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -12.232 -12.509 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.116 4.116 3 N -0.089 5.089 4 O 0.118 5.882 5 N 0.003 4.997 6 C -0.217 4.217 7 C 0.398 3.602 8 O -0.415 6.415 9 N -0.324 5.324 10 C 0.047 3.953 11 H 0.104 0.896 12 C -0.223 4.223 13 C -0.154 4.154 14 C -0.031 4.031 15 H 0.096 0.904 16 C -0.241 4.241 17 N -0.292 5.292 18 C -0.081 4.081 19 C 0.222 3.778 20 O -0.454 6.454 21 N -0.202 5.202 22 C -0.426 4.426 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.754 3.246 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.255 0.745 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.168 0.832 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.223 0.777 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.191 -11.171 -13.275 17.641 hybrid contribution 0.423 -0.154 1.587 1.649 sum -2.768 -11.325 -11.688 16.508 Atomic orbital electron populations 1.20239 0.83629 1.04431 1.04482 1.26112 1.00028 0.85716 0.99697 1.74991 0.91440 1.24296 1.18208 1.85083 1.22945 1.17115 1.63099 1.75495 1.22264 0.92182 1.09795 1.25902 0.88159 0.98163 1.09484 1.16365 0.85412 0.81726 0.76716 1.90742 1.19253 1.79899 1.51586 1.45692 1.10067 1.05128 1.71533 1.20862 0.98647 0.79612 0.96163 0.89589 1.22217 1.02190 1.01309 0.96615 1.21936 0.98508 0.99465 0.95499 1.21641 0.98363 0.87724 0.95356 0.90441 1.22502 0.99742 1.00522 1.01340 1.60245 1.23349 1.13875 1.31743 1.21668 1.00869 0.95180 0.90389 1.19817 0.85723 0.87597 0.84620 1.90559 1.45730 1.72120 1.36942 1.41859 1.52208 1.10980 1.15174 1.19613 1.35138 0.85731 1.02085 0.88026 1.25232 0.97091 1.00351 0.95195 1.69604 1.41414 1.37623 1.05819 0.85970 0.79140 0.82128 0.77352 1.19805 1.21019 1.19894 0.89162 0.89986 0.88467 0.74548 0.92066 0.92481 0.91695 0.90090 0.91035 0.92531 0.92274 0.92354 0.83203 0.90257 0.94039 0.77708 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.22 36.01 0.37 -0.52 16 2 C 0.05 0.84 7.79 -79.32 -0.62 0.22 16 3 N -0.36 -6.50 12.22 33.76 0.41 -6.09 16 4 O 0.34 6.48 11.65 27.27 0.32 6.80 16 5 N -0.28 -5.21 12.13 33.50 0.41 -4.81 16 6 C -0.05 -0.89 7.56 -80.07 -0.61 -1.49 16 7 C 0.61 9.95 7.81 -12.13 -0.09 9.85 16 8 O -0.54 -9.26 15.62 5.37 0.08 -9.18 16 9 N -0.67 -9.07 3.80 -54.61 -0.21 -9.27 16 10 C 0.15 1.62 2.57 -67.93 -0.17 1.45 16 11 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 12 C -0.16 -1.51 9.48 37.16 0.35 -1.15 16 13 C -0.12 -1.00 4.54 -26.73 -0.12 -1.12 16 14 C 0.08 0.83 2.59 -67.72 -0.18 0.65 16 15 H 0.08 0.86 7.80 -51.92 -0.40 0.45 16 16 C -0.18 -1.67 9.16 37.15 0.34 -1.33 16 17 N -0.66 -9.12 3.48 -107.99 -0.38 -9.50 16 18 C 0.05 0.87 5.97 -4.98 -0.03 0.84 16 19 C 0.44 9.84 7.82 -10.98 -0.09 9.76 16 20 O -0.57 -14.10 15.78 5.54 0.09 -14.02 16 21 N -0.57 -14.19 5.29 -10.96 -0.06 -14.25 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 24 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.85 13.05 55.50 0.72 -24.13 16 26 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 32 H 0.10 1.17 7.31 -51.93 -0.38 0.79 16 33 H 0.42 5.86 7.44 -40.82 -0.30 5.56 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.58 7.45 -51.93 -0.39 0.20 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 42 H 0.35 5.04 8.17 -39.29 -0.32 4.72 16 43 H 0.08 1.34 8.05 -51.93 -0.42 0.92 16 44 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 45 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -31.11 392.46 -5.43 -36.54 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -6.63 Total: 16.23 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -1.09 Total: 9.29 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: 0.90 Total: -68.04 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.49 Total: -16.39 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.11 -5.43 -36.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.584 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds