Wall clock time and date at job start Tue Mar 31 2020 22:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30643 * 128.64417 * 2 1 4 4 O 1.20842 * 109.61545 * 180.02562 * 3 2 1 5 5 N 1.20899 * 115.91137 * 359.73562 * 4 3 2 6 6 C 1.31609 * 109.18098 * 0.42848 * 5 4 3 7 7 C 1.48272 * 128.71571 * 179.88437 * 6 5 4 8 8 O 1.21496 * 119.99974 * 179.67691 * 7 6 5 9 9 N 1.34781 * 119.99930 * 359.67228 * 7 6 5 10 10 C 1.46499 * 119.99874 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47391 * 325.00213 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00543 * 10 9 7 13 13 C 1.53002 * 109.46799 * 205.00309 * 10 9 7 14 14 C 1.52997 * 109.47469 * 65.00172 * 13 10 9 15 15 H 1.09009 * 109.46733 * 54.99988 * 14 13 10 16 16 C 1.52993 * 109.47392 * 174.99649 * 14 13 10 17 17 N 1.46902 * 109.47110 * 295.00218 * 14 13 10 18 18 C 1.46899 * 110.99939 * 154.99761 * 17 14 13 19 19 C 1.50703 * 109.46895 * 179.97438 * 18 17 14 20 20 O 1.21297 * 119.99703 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00094 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99955 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00137 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99975 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99868 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99975 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47267 * 60.00024 * 26 24 22 28 28 H 1.48501 * 109.46918 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47245 * 299.99346 * 26 24 22 30 30 H 1.08998 * 109.46931 * 269.97700 * 1 2 3 31 31 H 1.09007 * 109.46948 * 29.97154 * 1 2 3 32 32 H 1.09001 * 109.47585 * 149.97301 * 1 2 3 33 33 H 0.97002 * 119.99716 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 35 35 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 36 36 H 1.09004 * 109.46724 * 180.02562 * 12 10 9 37 37 H 1.09008 * 109.46873 * 185.00266 * 13 10 9 38 38 H 1.08997 * 109.47047 * 304.99955 * 13 10 9 39 39 H 1.08993 * 109.47489 * 180.02562 * 16 14 13 40 40 H 1.09005 * 109.47082 * 300.00404 * 16 14 13 41 41 H 1.08999 * 109.46971 * 59.99914 * 16 14 13 42 42 H 1.00900 * 110.99450 * 278.95559 * 17 14 13 43 43 H 1.08996 * 109.47303 * 299.99337 * 18 17 14 44 44 H 1.09000 * 109.47295 * 60.00113 * 18 17 14 45 45 H 0.97002 * 120.00081 * 359.97438 * 21 19 18 46 46 H 0.97000 * 120.00187 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4653 0.6264 -0.0005 5 7 3.6101 -0.5739 0.0041 6 6 2.4279 -1.1522 -0.0006 7 6 2.1032 -2.5989 -0.0002 8 8 0.9435 -2.9612 0.0008 9 7 3.0945 -3.5121 -0.0009 10 6 2.7736 -4.9415 0.0001 11 1 1.8734 -5.1114 0.5907 12 6 2.5377 -5.4122 -1.4365 13 6 3.9383 -5.7251 0.6088 14 6 4.0945 -5.3443 2.0823 15 1 3.1480 -5.5002 2.6001 16 6 5.1758 -6.2168 2.7228 17 7 4.4815 -3.9309 2.1845 18 6 4.0799 -3.3674 3.4803 19 6 4.4933 -1.9198 3.5484 20 8 5.0656 -1.4078 2.6095 21 7 4.2270 -1.1941 4.6524 22 6 4.6025 0.1230 4.7140 23 1 5.1122 0.5789 3.8781 24 6 4.3284 0.8710 5.8525 25 7 3.7088 0.3161 6.8698 26 14 4.8408 2.6654 5.9368 27 1 4.1790 3.4210 4.8431 28 1 4.4354 3.2348 7.2470 29 1 6.3148 2.7669 5.7873 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 4.0204 -3.2228 -0.0014 34 1 1.7080 -4.8539 -1.8701 35 1 3.4379 -5.2423 -2.0270 36 1 2.2985 -6.4756 -1.4356 37 1 3.7384 -6.7937 0.5288 38 1 4.8566 -5.4862 0.0725 39 1 5.2867 -5.9459 3.7726 40 1 4.8885 -7.2656 2.6469 41 1 6.1222 -6.0610 2.2050 42 1 5.4721 -3.8153 2.0312 43 1 2.9980 -3.4422 3.5894 44 1 4.5653 -3.9216 4.2836 45 1 3.7689 -1.6035 5.4031 46 1 3.5171 0.8384 7.6644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146743301.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:53 Heat of formation + Delta-G solvation = 14.631891 kcal Electronic energy + Delta-G solvation = -31287.115788 eV Core-core repulsion = 27023.133240 eV Total energy + Delta-G solvation = -4263.982548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.76409 -40.90483 -40.08898 -38.46657 -36.34782 -36.01503 -35.73048 -35.55671 -33.25630 -32.79657 -31.28222 -30.24592 -27.94502 -27.60967 -26.77354 -25.64590 -23.58324 -22.76836 -21.76983 -21.40071 -20.96469 -19.93878 -19.87796 -19.34500 -18.07621 -17.66018 -17.36325 -16.71987 -16.38096 -16.13115 -15.91503 -15.60766 -15.44380 -15.21744 -14.90430 -14.72160 -14.42142 -14.35670 -14.22838 -13.92057 -13.56912 -13.49646 -13.34464 -13.09767 -12.95181 -12.90180 -12.78780 -12.74912 -12.61091 -12.42215 -12.24071 -12.14312 -12.06718 -11.71837 -11.62102 -11.45348 -11.34323 -11.26458 -10.24094 -10.03034 -9.96463 -9.16881 -8.45403 -5.92294 -0.11656 0.35066 1.37014 1.38717 1.48802 1.76011 2.05698 2.10962 2.27951 2.45931 2.50592 2.94213 3.04222 3.22644 3.57759 3.71661 3.78207 3.95253 4.08271 4.19900 4.25661 4.32155 4.40336 4.46767 4.51257 4.56868 4.59124 4.63553 4.71522 4.80875 4.86052 4.97828 5.02426 5.04640 5.06976 5.25933 5.31682 5.40755 5.41673 5.59249 5.93394 6.13923 6.49049 6.49387 6.62462 7.09361 7.15831 7.49268 7.60562 8.15820 8.72141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009507 B = 0.004741 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.626998 B = 5904.052075 C = 8032.232191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.052 3.948 3 N -0.376 5.376 4 O 0.321 5.679 5 N -0.294 5.294 6 C -0.059 4.059 7 C 0.609 3.391 8 O -0.552 6.552 9 N -0.661 5.661 10 C 0.146 3.854 11 H 0.074 0.926 12 C -0.158 4.158 13 C -0.105 4.105 14 C 0.080 3.920 15 H 0.074 0.926 16 C -0.175 4.175 17 N -0.665 5.665 18 C 0.069 3.931 19 C 0.438 3.562 20 O -0.592 6.592 21 N -0.581 5.581 22 C -0.321 4.321 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.924 5.924 26 Si 0.984 3.016 27 H -0.276 1.276 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.414 0.586 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.345 0.655 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.391 0.609 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 -14.177 -12.968 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 N -0.105 5.105 4 O 0.100 5.900 5 N -0.013 5.013 6 C -0.226 4.226 7 C 0.391 3.609 8 O -0.431 6.431 9 N -0.311 5.311 10 C 0.043 3.957 11 H 0.092 0.908 12 C -0.216 4.216 13 C -0.143 4.143 14 C -0.030 4.030 15 H 0.092 0.908 16 C -0.234 4.234 17 N -0.297 5.297 18 C -0.064 4.064 19 C 0.224 3.776 20 O -0.476 6.476 21 N -0.219 5.219 22 C -0.451 4.451 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.566 5.566 26 Si 0.808 3.192 27 H -0.202 1.202 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.165 0.835 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.224 0.776 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.400 -13.148 -13.744 19.321 hybrid contribution 0.486 0.333 1.651 1.753 sum -2.914 -12.815 -12.093 17.859 Atomic orbital electron populations 1.20428 0.80956 1.06052 1.05111 1.26795 1.01552 0.85038 0.98112 1.74962 0.91428 1.24917 1.19205 1.85057 1.23535 1.17289 1.64147 1.75442 1.23081 0.92289 1.10523 1.26367 0.88116 0.99296 1.08823 1.16381 0.85765 0.81509 0.77276 1.90724 1.19686 1.79881 1.52771 1.45821 1.09306 1.06117 1.69904 1.21128 0.99134 0.78034 0.97410 0.90804 1.22156 1.01798 1.02526 0.95126 1.21928 0.97815 1.00860 0.93728 1.21747 0.98604 0.85714 0.96913 0.90767 1.22417 0.99297 1.01392 1.00283 1.60258 1.23151 1.16449 1.29858 1.21435 1.00965 0.91309 0.92674 1.20838 0.83883 0.89606 0.83229 1.90544 1.46204 1.73367 1.37493 1.41944 1.53289 1.10544 1.16159 1.19526 1.36275 0.87374 1.01936 0.90448 1.25928 0.96910 1.03832 0.94642 1.69667 1.41911 1.38861 1.06120 0.85118 0.78809 0.77653 0.77603 1.20171 1.19586 1.19515 0.88782 0.87519 0.87669 0.74851 0.93995 0.91727 0.89112 0.86798 0.90285 0.93829 0.90092 0.92002 0.83527 0.89984 0.92321 0.77606 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 10.22 71.24 0.73 -0.93 16 2 C 0.05 1.73 7.79 45.18 0.35 2.08 16 3 N -0.38 -13.80 12.22 -51.81 -0.63 -14.43 16 4 O 0.32 12.57 11.65 140.85 1.64 14.21 16 5 N -0.29 -11.30 12.13 -52.04 -0.63 -11.93 16 6 C -0.06 -2.10 7.56 44.29 0.34 -1.77 16 7 C 0.61 19.58 7.81 86.91 0.68 20.26 16 8 O -0.55 -18.76 15.62 -3.70 -0.06 -18.82 16 9 N -0.66 -17.26 3.80 -445.00 -1.69 -18.95 16 10 C 0.15 2.81 2.57 44.99 0.12 2.93 16 11 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 12 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 13 C -0.11 -1.46 4.54 30.59 0.14 -1.32 16 14 C 0.08 1.45 2.59 44.91 0.12 1.57 16 15 H 0.07 1.45 7.80 -2.38 -0.02 1.43 16 16 C -0.18 -2.67 9.16 71.98 0.66 -2.02 16 17 N -0.66 -17.53 3.48 -495.58 -1.72 -19.25 16 18 C 0.07 2.26 5.97 85.56 0.51 2.77 16 19 C 0.44 19.95 7.82 87.66 0.69 20.63 16 20 O -0.59 -29.92 15.78 -3.08 -0.05 -29.97 16 21 N -0.58 -29.81 5.29 -306.98 -1.62 -31.43 16 22 C -0.32 -18.35 9.68 84.04 0.81 -17.53 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 25 N -0.92 -51.06 13.05 21.66 0.28 -50.78 16 26 Si 0.98 44.36 29.55 68.60 2.03 46.39 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.10 2.42 7.31 -2.39 -0.02 2.40 16 33 H 0.41 11.39 7.44 -92.71 -0.69 10.70 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.04 0.79 7.45 -2.39 -0.02 0.77 16 40 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 42 H 0.35 9.60 8.17 -89.69 -0.73 8.86 16 43 H 0.08 2.70 8.05 -2.39 -0.02 2.68 16 44 H 0.06 1.75 7.44 -2.39 -0.02 1.73 16 45 H 0.39 19.55 7.90 -92.71 -0.73 18.82 16 46 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -68.97 392.46 2.72 -66.25 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -1.11 Total: 44.14 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 6.28 Total: 24.57 kcal Atomic # 7 Polarization: -140.76 SS G_CDS: -6.02 Total: -146.78 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: 1.53 Total: -34.58 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -68.97 2.72 -66.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743301.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.882 kcal (2) G-P(sol) polarization free energy of solvation -68.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds