Wall clock time and date at job start Tue Mar 31 2020 22:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30649 * 128.64202 * 2 1 4 4 O 1.20834 * 109.61823 * 180.02562 * 3 2 1 5 5 N 1.20909 * 115.90771 * 359.74084 * 4 3 2 6 6 C 1.31602 * 109.18115 * 0.42965 * 5 4 3 7 7 C 1.48276 * 128.71156 * 179.88532 * 6 5 4 8 8 O 1.21502 * 119.99462 * 179.66844 * 7 6 5 9 9 N 1.34769 * 119.99975 * 359.67337 * 7 6 5 10 10 C 1.46505 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46711 * 33.55520 * 10 9 7 12 12 C 1.52992 * 109.47018 * 273.55827 * 10 9 7 13 13 C 1.52995 * 109.47152 * 153.55412 * 10 9 7 14 14 C 1.53004 * 109.47616 * 294.54777 * 13 10 9 15 15 H 1.09003 * 109.46676 * 54.62361 * 14 13 10 16 16 C 1.52994 * 109.47004 * 294.62955 * 14 13 10 17 17 N 1.46894 * 109.47274 * 174.62252 * 14 13 10 18 18 C 1.46902 * 111.00110 * 203.26126 * 17 14 13 19 19 C 1.50696 * 109.47014 * 180.02562 * 18 17 14 20 20 O 1.21292 * 120.00511 * 359.71946 * 19 18 17 21 21 N 1.34780 * 120.00152 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00273 * 179.97438 * 21 19 18 23 23 H 1.07993 * 119.99836 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99772 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00360 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99907 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47244 * 59.99890 * 26 24 22 28 28 H 1.48494 * 109.47429 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47146 * 300.00307 * 26 24 22 30 30 H 1.09006 * 109.46957 * 269.96798 * 1 2 3 31 31 H 1.09005 * 109.47408 * 29.96412 * 1 2 3 32 32 H 1.08993 * 109.47368 * 149.96854 * 1 2 3 33 33 H 0.97001 * 120.00601 * 359.97438 * 9 7 6 34 34 H 1.08991 * 109.47405 * 299.99697 * 12 10 9 35 35 H 1.09008 * 109.47093 * 60.00113 * 12 10 9 36 36 H 1.09008 * 109.46968 * 179.97438 * 12 10 9 37 37 H 1.09010 * 109.47196 * 174.55035 * 13 10 9 38 38 H 1.08995 * 109.47057 * 54.55378 * 13 10 9 39 39 H 1.09003 * 109.46919 * 299.99257 * 16 14 13 40 40 H 1.09002 * 109.47645 * 59.99775 * 16 14 13 41 41 H 1.09000 * 109.47028 * 179.97438 * 16 14 13 42 42 H 1.00900 * 111.00423 * 327.22106 * 17 14 13 43 43 H 1.08997 * 109.46824 * 60.00766 * 18 17 14 44 44 H 1.08992 * 109.47089 * 299.99987 * 18 17 14 45 45 H 0.96999 * 119.99394 * 0.02562 * 21 19 18 46 46 H 0.96998 * 120.00216 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6101 -0.5738 0.0040 6 6 2.4280 -1.1521 -0.0008 7 6 2.1034 -2.5988 -0.0005 8 8 0.9436 -2.9612 0.0006 9 7 3.0947 -3.5118 -0.0013 10 6 2.7740 -4.9414 -0.0003 11 1 1.8581 -5.1086 -0.5673 12 6 2.5766 -5.4188 1.4397 13 6 3.9218 -5.7219 -0.6437 14 6 4.0311 -5.3426 -2.1220 15 1 4.1294 -4.2609 -2.2131 16 6 2.7738 -5.8045 -2.8613 17 7 5.2107 -5.9926 -2.7084 18 6 5.6736 -5.2678 -3.8993 19 6 6.8818 -5.9629 -4.4722 20 8 7.3177 -6.9607 -3.9379 21 7 7.4817 -5.4723 -5.5750 22 6 8.5811 -6.1044 -6.0959 23 1 8.9662 -6.9956 -5.6229 24 6 9.1992 -5.5988 -7.2330 25 7 8.7303 -4.5146 -7.8088 26 14 10.6968 -6.4604 -7.9433 27 1 10.3360 -7.8510 -8.3193 28 1 11.1652 -5.7274 -9.1468 29 1 11.7802 -6.4875 -6.9280 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3634 -0.8896 -0.5143 33 1 4.0205 -3.2226 -0.0024 34 1 3.4923 -5.2516 2.0067 35 1 1.7587 -4.8626 1.8980 36 1 2.3375 -6.4823 1.4403 37 1 3.7280 -6.7911 -0.5564 38 1 4.8554 -5.4794 -0.1363 39 1 2.6755 -6.8862 -2.7702 40 1 1.8985 -5.3221 -2.4262 41 1 2.8515 -5.5339 -3.9143 42 1 5.9507 -6.0806 -2.0282 43 1 5.9382 -4.2471 -3.6234 44 1 4.8786 -5.2484 -4.6447 45 1 7.1360 -4.6716 -5.9995 46 1 9.1621 -4.1615 -8.6024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146743304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:57 Heat of formation + Delta-G solvation = 33.124288 kcal Electronic energy + Delta-G solvation = -29047.947050 eV Core-core repulsion = 24784.766392 eV Total energy + Delta-G solvation = -4263.180658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -47.29699 -40.42075 -38.51029 -37.53257 -35.71693 -35.32978 -35.08954 -33.89487 -32.12834 -31.22982 -30.32280 -29.78773 -27.17537 -26.46856 -26.12503 -24.07766 -23.08267 -22.19960 -21.16209 -20.32335 -19.46061 -19.31034 -18.83229 -17.89424 -17.56899 -16.68464 -16.36729 -15.57298 -15.37173 -15.10995 -14.95279 -14.50832 -14.41894 -14.16675 -13.98479 -13.91727 -13.80324 -13.64184 -13.21219 -12.92216 -12.56744 -12.42663 -12.34853 -12.30336 -12.19678 -11.95992 -11.73430 -11.60117 -11.52647 -11.26519 -11.03404 -10.98764 -10.80307 -10.76468 -10.73100 -10.44676 -10.21741 -9.61696 -9.50578 -8.46366 -8.09561 -7.96691 -6.42029 -3.83067 0.31608 0.88057 2.19090 2.48595 2.93005 2.99427 3.19760 3.25531 3.29829 3.43334 3.89413 3.96853 4.20643 4.23425 4.37252 4.57597 4.62509 4.68582 4.82089 4.97529 5.01835 5.06670 5.12976 5.21255 5.25026 5.30784 5.33043 5.50170 5.53276 5.63162 5.70309 5.75380 5.81453 5.87818 5.97482 6.00091 6.06053 6.24733 6.35516 6.84916 7.21462 7.49195 7.54537 7.64618 8.00876 8.05525 8.60613 9.17182 9.53630 10.05005 10.75649 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.002216 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.642054 B =12630.566333 C =14090.410808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.062 3.938 3 N -0.356 5.356 4 O 0.345 5.655 5 N -0.318 5.318 6 C -0.047 4.047 7 C 0.609 3.391 8 O -0.512 6.512 9 N -0.702 5.702 10 C 0.141 3.859 11 H 0.102 0.898 12 C -0.164 4.164 13 C -0.129 4.129 14 C 0.082 3.918 15 H 0.039 0.961 16 C -0.143 4.143 17 N -0.663 5.663 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.408 0.592 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.349 0.651 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 8.517 17.827 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 N -0.082 5.082 4 O 0.119 5.881 5 N -0.038 5.038 6 C -0.212 4.212 7 C 0.392 3.608 8 O -0.385 6.385 9 N -0.354 5.354 10 C 0.037 3.963 11 H 0.120 0.880 12 C -0.222 4.222 13 C -0.168 4.168 14 C -0.028 4.028 15 H 0.057 0.943 16 C -0.201 4.201 17 N -0.296 5.296 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.121 0.879 33 H 0.243 0.757 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.169 0.831 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.122 7.876 17.644 25.817 hybrid contribution 0.875 0.655 -0.384 1.159 sum -16.247 8.531 17.261 25.193 Atomic orbital electron populations 1.20359 0.82825 1.05418 1.04751 1.26269 1.00422 0.85073 0.98652 1.75093 0.91121 1.23962 1.18007 1.85090 1.23322 1.16510 1.63163 1.75386 1.22999 0.92972 1.12395 1.26094 0.88233 0.98490 1.08409 1.16411 0.85709 0.81460 0.77267 1.90823 1.18767 1.79484 1.49439 1.46011 1.09487 1.06658 1.73283 1.21243 1.00005 0.77681 0.97349 0.88049 1.22186 1.02349 1.02090 0.95592 1.22101 0.97925 1.01727 0.95016 1.21521 0.92489 0.96112 0.92648 0.94304 1.21867 0.95681 1.02152 1.00399 1.60120 1.08690 1.51917 1.08896 1.21706 0.97540 0.94931 0.93975 1.19799 0.86428 0.87383 0.83773 1.90518 1.66845 1.27337 1.62091 1.41865 1.27166 1.26689 1.24286 1.19652 1.04556 1.10095 1.08652 0.87968 1.25267 0.99551 0.96396 0.96726 1.69604 1.41590 1.21599 1.21543 0.85914 0.80980 0.79125 0.78177 1.19864 1.20972 1.19907 0.88801 0.89313 0.87902 0.75680 0.92188 0.92024 0.90837 0.88629 0.91033 0.91645 0.92776 0.92602 0.83143 0.94043 0.89702 0.77484 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.22 36.01 0.37 -0.08 16 2 C 0.06 0.54 7.79 -79.33 -0.62 -0.08 16 3 N -0.36 -3.41 12.22 33.76 0.41 -3.00 16 4 O 0.35 3.35 11.65 27.26 0.32 3.67 16 5 N -0.32 -3.13 12.13 33.50 0.41 -2.73 16 6 C -0.05 -0.45 7.56 -80.07 -0.61 -1.05 16 7 C 0.61 6.01 7.83 -12.14 -0.09 5.91 16 8 O -0.51 -5.88 15.60 5.36 0.08 -5.80 16 9 N -0.70 -5.91 4.45 -54.62 -0.24 -6.16 16 10 C 0.14 1.13 2.47 -67.93 -0.17 0.96 16 11 H 0.10 0.92 5.73 -51.93 -0.30 0.62 16 12 C -0.16 -1.15 9.50 37.15 0.35 -0.79 16 13 C -0.13 -1.13 4.28 -26.73 -0.11 -1.24 16 14 C 0.08 0.95 2.63 -67.72 -0.18 0.77 16 15 H 0.04 0.45 7.31 -51.93 -0.38 0.07 16 16 C -0.14 -1.63 9.16 37.15 0.34 -1.29 16 17 N -0.66 -10.25 5.93 -108.00 -0.64 -10.89 16 18 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 19 C 0.44 10.42 7.82 -10.99 -0.09 10.33 16 20 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 21 N -0.56 -14.37 5.29 -10.97 -0.06 -14.43 16 22 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.64 7.31 -51.93 -0.38 0.26 16 33 H 0.41 3.15 8.47 -40.82 -0.35 2.80 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 38 H 0.07 0.58 8.02 -51.93 -0.42 0.17 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.54 6.47 -51.93 -0.34 0.20 16 41 H 0.05 0.69 7.35 -51.93 -0.38 0.31 16 42 H 0.35 5.48 8.00 -39.29 -0.31 5.17 16 43 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.08 1.42 7.32 -51.93 -0.38 1.04 16 45 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -32.31 391.76 -5.54 -37.85 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -6.44 Total: 12.87 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.07 Total: 6.27 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.60 Total: -61.15 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.49 Total: -17.85 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.31 -5.54 -37.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.977 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds