Wall clock time and date at job start Tue Mar 31 2020 22:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30649 * 128.64202 * 2 1 4 4 O 1.20834 * 109.61823 * 180.02562 * 3 2 1 5 5 N 1.20909 * 115.90771 * 359.74084 * 4 3 2 6 6 C 1.31602 * 109.18115 * 0.42965 * 5 4 3 7 7 C 1.48276 * 128.71156 * 179.88532 * 6 5 4 8 8 O 1.21502 * 119.99462 * 179.66844 * 7 6 5 9 9 N 1.34769 * 119.99975 * 359.67337 * 7 6 5 10 10 C 1.46505 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.46711 * 33.55520 * 10 9 7 12 12 C 1.52992 * 109.47018 * 273.55827 * 10 9 7 13 13 C 1.52995 * 109.47152 * 153.55412 * 10 9 7 14 14 C 1.53004 * 109.47616 * 294.54777 * 13 10 9 15 15 H 1.09003 * 109.46676 * 54.62361 * 14 13 10 16 16 C 1.52994 * 109.47004 * 294.62955 * 14 13 10 17 17 N 1.46894 * 109.47274 * 174.62252 * 14 13 10 18 18 C 1.46902 * 111.00110 * 203.26126 * 17 14 13 19 19 C 1.50696 * 109.47014 * 180.02562 * 18 17 14 20 20 O 1.21292 * 120.00511 * 359.71946 * 19 18 17 21 21 N 1.34780 * 120.00152 * 180.02562 * 19 18 17 22 22 C 1.37098 * 120.00273 * 179.97438 * 21 19 18 23 23 H 1.07993 * 119.99836 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99772 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00360 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99907 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47244 * 59.99890 * 26 24 22 28 28 H 1.48494 * 109.47429 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47146 * 300.00307 * 26 24 22 30 30 H 1.09006 * 109.46957 * 269.96798 * 1 2 3 31 31 H 1.09005 * 109.47408 * 29.96412 * 1 2 3 32 32 H 1.08993 * 109.47368 * 149.96854 * 1 2 3 33 33 H 0.97001 * 120.00601 * 359.97438 * 9 7 6 34 34 H 1.08991 * 109.47405 * 299.99697 * 12 10 9 35 35 H 1.09008 * 109.47093 * 60.00113 * 12 10 9 36 36 H 1.09008 * 109.46968 * 179.97438 * 12 10 9 37 37 H 1.09010 * 109.47196 * 174.55035 * 13 10 9 38 38 H 1.08995 * 109.47057 * 54.55378 * 13 10 9 39 39 H 1.09003 * 109.46919 * 299.99257 * 16 14 13 40 40 H 1.09002 * 109.47645 * 59.99775 * 16 14 13 41 41 H 1.09000 * 109.47028 * 179.97438 * 16 14 13 42 42 H 1.00900 * 111.00423 * 327.22106 * 17 14 13 43 43 H 1.08997 * 109.46824 * 60.00766 * 18 17 14 44 44 H 1.08992 * 109.47089 * 299.99987 * 18 17 14 45 45 H 0.96999 * 119.99394 * 0.02562 * 21 19 18 46 46 H 0.96998 * 120.00216 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0205 0.0000 4 8 3.4652 0.6266 -0.0005 5 7 3.6101 -0.5738 0.0040 6 6 2.4280 -1.1521 -0.0008 7 6 2.1034 -2.5988 -0.0005 8 8 0.9436 -2.9612 0.0006 9 7 3.0947 -3.5118 -0.0013 10 6 2.7740 -4.9414 -0.0003 11 1 1.8581 -5.1086 -0.5673 12 6 2.5766 -5.4188 1.4397 13 6 3.9218 -5.7219 -0.6437 14 6 4.0311 -5.3426 -2.1220 15 1 4.1294 -4.2609 -2.2131 16 6 2.7738 -5.8045 -2.8613 17 7 5.2107 -5.9926 -2.7084 18 6 5.6736 -5.2678 -3.8993 19 6 6.8818 -5.9629 -4.4722 20 8 7.3177 -6.9607 -3.9379 21 7 7.4817 -5.4723 -5.5750 22 6 8.5811 -6.1044 -6.0959 23 1 8.9662 -6.9956 -5.6229 24 6 9.1992 -5.5988 -7.2330 25 7 8.7303 -4.5146 -7.8088 26 14 10.6968 -6.4604 -7.9433 27 1 10.3360 -7.8510 -8.3193 28 1 11.1652 -5.7274 -9.1468 29 1 11.7802 -6.4875 -6.9280 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8903 -0.5133 32 1 -0.3634 -0.8896 -0.5143 33 1 4.0205 -3.2226 -0.0024 34 1 3.4923 -5.2516 2.0067 35 1 1.7587 -4.8626 1.8980 36 1 2.3375 -6.4823 1.4403 37 1 3.7280 -6.7911 -0.5564 38 1 4.8554 -5.4794 -0.1363 39 1 2.6755 -6.8862 -2.7702 40 1 1.8985 -5.3221 -2.4262 41 1 2.8515 -5.5339 -3.9143 42 1 5.9507 -6.0806 -2.0282 43 1 5.9382 -4.2471 -3.6234 44 1 4.8786 -5.2484 -4.6447 45 1 7.1360 -4.6716 -5.9995 46 1 9.1621 -4.1615 -8.6024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146743304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:56 Heat of formation + Delta-G solvation = 8.511097 kcal Electronic energy + Delta-G solvation = -29049.014358 eV Core-core repulsion = 24784.766392 eV Total energy + Delta-G solvation = -4264.247966 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.00730 -41.18174 -40.21256 -38.62374 -36.57172 -36.20648 -35.90581 -35.77299 -33.34427 -32.94364 -31.28337 -30.35556 -28.28557 -27.62008 -27.03192 -25.76450 -23.77688 -22.98088 -21.93891 -21.24256 -21.06562 -20.18128 -19.94460 -19.57831 -18.29726 -17.89392 -17.41028 -17.00410 -16.56076 -16.28661 -16.09338 -15.68176 -15.55934 -15.48116 -15.11757 -14.83138 -14.49563 -14.44688 -14.33483 -13.94361 -13.67381 -13.50257 -13.32129 -13.30663 -13.04668 -12.95708 -12.92231 -12.85490 -12.74557 -12.44489 -12.33600 -12.18619 -12.12606 -11.76246 -11.68976 -11.53429 -11.50829 -11.42451 -10.38866 -10.29530 -10.03317 -9.35419 -8.47622 -5.96768 -0.42731 0.19938 1.39266 1.41199 1.47812 1.52313 1.73623 2.03355 2.24596 2.28120 2.31270 2.75085 2.84655 3.19413 3.44864 3.54917 3.66186 3.76561 3.88721 4.05906 4.08794 4.28077 4.32573 4.37496 4.43533 4.46814 4.56485 4.58009 4.68156 4.71515 4.83296 4.91761 4.92251 4.97599 5.07080 5.16158 5.29074 5.30926 5.39599 5.43812 5.89599 6.10564 6.14243 6.43828 6.58280 6.77058 7.10944 7.28756 7.54337 8.09180 8.69611 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.002216 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.642054 B =12630.566333 C =14090.410808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.065 3.935 3 N -0.366 5.366 4 O 0.339 5.661 5 N -0.323 5.323 6 C -0.056 4.056 7 C 0.610 3.390 8 O -0.530 6.530 9 N -0.696 5.696 10 C 0.146 3.854 11 H 0.095 0.905 12 C -0.159 4.159 13 C -0.120 4.120 14 C 0.084 3.916 15 H 0.042 0.958 16 C -0.141 4.141 17 N -0.674 5.674 18 C 0.066 3.934 19 C 0.438 3.562 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.347 0.653 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.395 0.605 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 8.826 18.368 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 N -0.094 5.094 4 O 0.115 5.885 5 N -0.042 5.042 6 C -0.221 4.221 7 C 0.393 3.607 8 O -0.405 6.405 9 N -0.348 5.348 10 C 0.043 3.957 11 H 0.113 0.887 12 C -0.217 4.217 13 C -0.158 4.158 14 C -0.025 4.025 15 H 0.060 0.940 16 C -0.199 4.199 17 N -0.308 5.308 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.166 0.834 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.229 0.771 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.726 8.201 18.191 26.691 hybrid contribution 1.005 0.557 -0.512 1.258 sum -16.721 8.759 17.679 25.863 Atomic orbital electron populations 1.20514 0.80900 1.05980 1.05902 1.26748 1.01519 0.84453 0.97404 1.75092 0.91164 1.24302 1.18816 1.85079 1.23564 1.16423 1.63437 1.75358 1.23275 0.93131 1.12469 1.26182 0.88492 0.98686 1.08760 1.16431 0.85621 0.81608 0.77081 1.90813 1.19428 1.79743 1.50506 1.46019 1.09504 1.06714 1.72546 1.21207 0.99251 0.77272 0.97989 0.88726 1.22142 1.02354 1.02650 0.94568 1.22021 0.98675 1.02088 0.93041 1.21596 0.90719 0.96007 0.94187 0.93968 1.21853 0.96219 1.02075 0.99720 1.60121 1.09575 1.52566 1.08494 1.21536 0.94907 0.95171 0.95026 1.20835 0.87187 0.86755 0.82630 1.90485 1.68253 1.29094 1.62913 1.41950 1.27132 1.26924 1.25092 1.19641 1.06352 1.10441 1.09947 0.90189 1.26065 1.01950 0.96909 0.96425 1.69669 1.42542 1.22234 1.21784 0.84981 0.77478 0.78115 0.77729 1.19673 1.19532 1.19561 0.87238 0.87783 0.88202 0.75182 0.91552 0.92835 0.89674 0.88150 0.90123 0.91990 0.91251 0.93865 0.83389 0.92009 0.88531 0.77093 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.22 71.24 0.73 -0.04 16 2 C 0.06 1.06 7.79 45.18 0.35 1.42 16 3 N -0.37 -6.73 12.22 -51.80 -0.63 -7.36 16 4 O 0.34 6.42 11.65 140.85 1.64 8.06 16 5 N -0.32 -6.13 12.13 -52.03 -0.63 -6.76 16 6 C -0.06 -1.02 7.56 44.29 0.34 -0.69 16 7 C 0.61 11.30 7.83 86.92 0.68 11.98 16 8 O -0.53 -11.55 15.60 -3.72 -0.06 -11.61 16 9 N -0.70 -10.63 4.45 -445.01 -1.98 -12.61 16 10 C 0.15 2.07 2.47 44.99 0.11 2.18 16 11 H 0.09 1.53 5.73 -2.39 -0.01 1.52 16 12 C -0.16 -1.90 9.50 71.98 0.68 -1.22 16 13 C -0.12 -1.85 4.28 30.59 0.13 -1.72 16 14 C 0.08 1.79 2.63 44.92 0.12 1.91 16 15 H 0.04 0.89 7.31 -2.39 -0.02 0.88 16 16 C -0.14 -2.99 9.16 71.98 0.66 -2.33 16 17 N -0.67 -20.08 5.93 -495.61 -2.94 -23.01 16 18 C 0.07 2.27 5.97 85.56 0.51 2.78 16 19 C 0.44 20.87 7.82 87.66 0.69 21.56 16 20 O -0.62 -34.18 15.78 -3.07 -0.05 -34.23 16 21 N -0.57 -29.67 5.29 -306.99 -1.62 -31.30 16 22 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 23 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -50.09 13.05 21.66 0.28 -49.81 16 26 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 30 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.10 1.11 7.31 -2.39 -0.02 1.10 16 33 H 0.41 5.70 8.47 -92.71 -0.79 4.92 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.13 8.02 -2.39 -0.02 1.12 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.26 6.47 -2.39 -0.02 1.25 16 41 H 0.04 1.02 7.35 -2.39 -0.02 1.00 16 42 H 0.35 10.57 8.00 -89.69 -0.72 9.85 16 43 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 44 H 0.10 3.12 7.32 -2.39 -0.02 3.10 16 45 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 46 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -69.35 391.76 1.14 -68.21 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: -1.18 Total: 38.09 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 6.28 Total: 17.30 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -7.52 Total: -130.85 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: 1.53 Total: -37.78 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.35 1.14 -68.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.722 kcal (2) G-P(sol) polarization free energy of solvation -69.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds