Wall clock time and date at job start Tue Mar 31 2020 22:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 N 1.30645 * 128.64280 * 2 1 4 4 O 1.20840 * 109.61889 * 180.02562 * 3 2 1 5 5 N 1.20897 * 115.91270 * 359.73263 * 4 3 2 6 6 C 1.31608 * 109.17784 * 0.43139 * 5 4 3 7 7 C 1.48280 * 128.71527 * 179.87990 * 6 5 4 8 8 O 1.21500 * 119.99908 * 179.67322 * 7 6 5 9 9 N 1.34773 * 119.99644 * 359.68148 * 7 6 5 10 10 C 1.46499 * 119.99796 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47103 * 324.99981 * 10 9 7 12 12 C 1.53007 * 109.47060 * 84.99530 * 10 9 7 13 13 C 1.53001 * 109.47197 * 204.99376 * 10 9 7 14 14 C 1.53000 * 109.46786 * 65.00336 * 13 10 9 15 15 H 1.09003 * 109.46980 * 304.99719 * 14 13 10 16 16 C 1.52995 * 109.47134 * 184.99812 * 14 13 10 17 17 N 1.46906 * 109.47281 * 64.99922 * 14 13 10 18 18 C 1.46901 * 110.99793 * 205.00148 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 H 1.09000 * 109.47563 * 269.97280 * 1 2 3 31 31 H 1.08998 * 109.47319 * 29.97725 * 1 2 3 32 32 H 1.08999 * 109.47397 * 149.97488 * 1 2 3 33 33 H 0.97002 * 120.00562 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46794 * 60.00262 * 12 10 9 35 35 H 1.09005 * 109.47119 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47200 * 300.00119 * 12 10 9 37 37 H 1.08996 * 109.47160 * 304.99933 * 13 10 9 38 38 H 1.09003 * 109.46780 * 184.99983 * 13 10 9 39 39 H 1.09001 * 109.47056 * 59.99890 * 16 14 13 40 40 H 1.09000 * 109.47395 * 179.97438 * 16 14 13 41 41 H 1.09003 * 109.47112 * 299.99827 * 16 14 13 42 42 H 1.00898 * 110.99995 * 328.95225 * 17 14 13 43 43 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 44 44 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 45 45 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 46 46 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3227 1.0204 0.0000 4 8 3.4651 0.6265 -0.0005 5 7 3.6101 -0.5737 0.0042 6 6 2.4279 -1.1520 -0.0006 7 6 2.1033 -2.5989 -0.0002 8 8 0.9436 -2.9612 0.0009 9 7 3.0946 -3.5119 -0.0008 10 6 2.7739 -4.9413 0.0002 11 1 1.8736 -5.1113 0.5907 12 6 2.5380 -5.4121 -1.4364 13 6 3.9386 -5.7249 0.6089 14 6 4.0946 -5.3441 2.0825 15 1 4.2058 -4.2632 2.1686 16 6 5.3339 -6.0319 2.6585 17 7 2.9045 -5.7749 2.8282 18 6 2.7172 -4.9607 4.0365 19 6 1.4893 -5.4304 4.7734 20 8 0.8350 -6.3530 4.3353 21 7 1.1190 -4.8260 5.9197 22 6 0.0023 -5.2537 6.5903 23 1 -0.5808 -6.0746 6.1997 24 6 -0.3799 -4.6303 7.7718 25 7 0.3293 -3.6311 8.2467 26 14 -1.9010 -5.2134 8.6859 27 1 -1.7319 -6.6378 9.0702 28 1 -2.0902 -4.3907 9.9076 29 1 -3.0900 -5.0758 7.8069 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 4.0205 -3.2226 -0.0019 34 1 3.4383 -5.2421 -2.0268 35 1 2.2998 -6.4758 -1.4357 36 1 1.7083 -4.8538 -1.8700 37 1 4.8569 -5.4859 0.0726 38 1 3.7387 -6.7935 0.5289 39 1 6.2170 -5.7123 2.1052 40 1 5.4454 -5.7602 3.7082 41 1 5.2227 -7.1128 2.5724 42 1 2.0824 -5.7489 2.2437 43 1 2.5935 -3.9151 3.7546 44 1 3.5897 -5.0622 4.6819 45 1 1.6424 -4.0885 6.2702 46 1 0.0627 -3.1961 9.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146743306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:00 Heat of formation + Delta-G solvation = 34.237884 kcal Electronic energy + Delta-G solvation = -29862.670106 eV Core-core repulsion = 25599.537737 eV Total energy + Delta-G solvation = -4263.132368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.19455 -40.32275 -38.50427 -37.47007 -35.59370 -35.17996 -34.95993 -33.86977 -31.92862 -31.20208 -30.56043 -29.66404 -27.16237 -26.29940 -26.07630 -23.94034 -22.97266 -22.15728 -21.09697 -20.27984 -19.36569 -19.27864 -18.77996 -17.88113 -17.45971 -16.61874 -16.31616 -15.51666 -15.23733 -15.20140 -14.84997 -14.44353 -14.34892 -13.98553 -13.88004 -13.80907 -13.69397 -13.61847 -13.08386 -12.73561 -12.52915 -12.35947 -12.26448 -12.21385 -12.15923 -11.86307 -11.80966 -11.56510 -11.47682 -11.28421 -11.09777 -10.97277 -10.67025 -10.64900 -10.60115 -10.42712 -10.19321 -9.52973 -9.47943 -8.42782 -8.06859 -7.93903 -6.39604 -3.80412 0.41793 1.00401 2.29109 2.62306 3.04576 3.11227 3.21705 3.27042 3.31683 3.54519 3.92779 4.09961 4.29879 4.34136 4.36820 4.51530 4.63043 4.80526 4.88183 5.08153 5.15283 5.18104 5.26326 5.29654 5.31082 5.33158 5.41839 5.55368 5.65022 5.70318 5.72339 5.78503 5.84150 5.93843 5.98185 6.03907 6.09719 6.25582 6.35194 6.95412 7.23604 7.56957 7.62465 7.66634 8.08096 8.11048 8.63326 9.19792 9.56206 10.07810 10.78153 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008851 B = 0.003221 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.547528 B = 8692.107052 C =10511.080344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.065 3.935 3 N -0.357 5.357 4 O 0.342 5.658 5 N -0.322 5.322 6 C -0.043 4.043 7 C 0.605 3.395 8 O -0.502 6.502 9 N -0.705 5.705 10 C 0.134 3.866 11 H 0.099 0.901 12 C -0.162 4.162 13 C -0.129 4.129 14 C 0.080 3.920 15 H 0.040 0.960 16 C -0.140 4.140 17 N -0.662 5.662 18 C 0.052 3.948 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.406 0.594 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.348 0.652 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.391 0.609 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.567 5.790 -19.513 22.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 N -0.083 5.083 4 O 0.117 5.883 5 N -0.043 5.043 6 C -0.209 4.209 7 C 0.387 3.613 8 O -0.374 6.374 9 N -0.357 5.357 10 C 0.030 3.970 11 H 0.116 0.884 12 C -0.220 4.220 13 C -0.167 4.167 14 C -0.030 4.030 15 H 0.058 0.942 16 C -0.198 4.198 17 N -0.297 5.297 18 C -0.081 4.081 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.241 0.759 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.169 0.831 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.509 5.169 -19.289 22.118 hybrid contribution -0.812 0.813 0.502 1.254 sum 8.697 5.982 -18.787 21.549 Atomic orbital electron populations 1.20392 0.82738 1.05231 1.05245 1.26287 1.00496 0.85015 0.98229 1.75088 0.91053 1.23894 1.18251 1.85057 1.23420 1.16516 1.63293 1.75324 1.23039 0.93010 1.12892 1.26088 0.88241 0.98476 1.08096 1.16455 0.85796 0.81512 0.77499 1.90875 1.18717 1.79335 1.48459 1.45951 1.09298 1.06525 1.73961 1.21272 0.99994 0.77888 0.97808 0.88360 1.22161 1.02180 1.02245 0.95412 1.22128 0.97685 1.01728 0.95188 1.21558 0.92399 0.97203 0.91842 0.94181 1.21790 0.95443 1.01582 1.00937 1.60223 1.05960 1.55577 1.07917 1.21693 0.98769 0.94438 0.93151 1.19794 0.87564 0.86319 0.83656 1.90519 1.56373 1.31188 1.68508 1.41850 1.25777 1.31863 1.20542 1.19658 1.02929 1.16351 1.03924 0.87967 1.25252 0.99327 0.96078 0.97239 1.69609 1.39707 1.22734 1.22376 0.85922 0.81230 0.78625 0.78474 1.19875 1.20984 1.19895 0.88372 0.89364 0.87906 0.75880 0.92339 0.90778 0.91925 0.90493 0.88596 0.92937 0.92531 0.91753 0.83063 0.94407 0.89674 0.77549 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.22 36.00 0.37 -0.31 16 2 C 0.07 0.71 7.79 -79.33 -0.62 0.09 16 3 N -0.36 -3.92 12.22 33.76 0.41 -3.51 16 4 O 0.34 3.60 11.65 27.27 0.32 3.92 16 5 N -0.32 -3.41 12.13 33.49 0.41 -3.01 16 6 C -0.04 -0.49 7.56 -80.06 -0.61 -1.10 16 7 C 0.61 7.32 7.81 -12.13 -0.09 7.23 16 8 O -0.50 -7.42 15.62 5.37 0.08 -7.34 16 9 N -0.70 -6.85 4.45 -54.61 -0.24 -7.10 16 10 C 0.13 1.31 2.48 -67.93 -0.17 1.14 16 11 H 0.10 1.26 5.72 -51.93 -0.30 0.96 16 12 C -0.16 -1.35 9.48 37.16 0.35 -0.99 16 13 C -0.13 -1.13 4.35 -26.73 -0.12 -1.24 16 14 C 0.08 0.92 2.59 -67.71 -0.18 0.75 16 15 H 0.04 0.47 7.28 -51.93 -0.38 0.09 16 16 C -0.14 -1.50 9.41 37.16 0.35 -1.15 16 17 N -0.66 -10.57 5.93 -107.99 -0.64 -11.21 16 18 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 19 C 0.44 10.70 7.82 -10.98 -0.09 10.61 16 20 O -0.58 -16.08 15.78 5.55 0.09 -16.00 16 21 N -0.56 -14.64 5.29 -10.96 -0.06 -14.70 16 22 C -0.30 -8.50 9.68 -14.94 -0.14 -8.64 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 26 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.92 7.31 -51.93 -0.38 0.54 16 33 H 0.41 3.24 8.46 -40.82 -0.35 2.89 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.35 5.89 6.11 -39.29 -0.24 5.65 16 43 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 44 H 0.09 1.45 7.44 -51.93 -0.39 1.06 16 45 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -32.84 392.13 -5.56 -38.40 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -6.47 Total: 14.67 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -1.06 Total: 7.83 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.60 Total: -63.73 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.49 Total: -19.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.84 -5.56 -38.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.635 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds