Wall clock time and date at job start Tue Mar 31 2020 22:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 N 1.30645 * 128.64280 * 2 1 4 4 O 1.20840 * 109.61889 * 180.02562 * 3 2 1 5 5 N 1.20897 * 115.91270 * 359.73263 * 4 3 2 6 6 C 1.31608 * 109.17784 * 0.43139 * 5 4 3 7 7 C 1.48280 * 128.71527 * 179.87990 * 6 5 4 8 8 O 1.21500 * 119.99908 * 179.67322 * 7 6 5 9 9 N 1.34773 * 119.99644 * 359.68148 * 7 6 5 10 10 C 1.46499 * 119.99796 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47103 * 324.99981 * 10 9 7 12 12 C 1.53007 * 109.47060 * 84.99530 * 10 9 7 13 13 C 1.53001 * 109.47197 * 204.99376 * 10 9 7 14 14 C 1.53000 * 109.46786 * 65.00336 * 13 10 9 15 15 H 1.09003 * 109.46980 * 304.99719 * 14 13 10 16 16 C 1.52995 * 109.47134 * 184.99812 * 14 13 10 17 17 N 1.46906 * 109.47281 * 64.99922 * 14 13 10 18 18 C 1.46901 * 110.99793 * 205.00148 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 H 1.09000 * 109.47563 * 269.97280 * 1 2 3 31 31 H 1.08998 * 109.47319 * 29.97725 * 1 2 3 32 32 H 1.08999 * 109.47397 * 149.97488 * 1 2 3 33 33 H 0.97002 * 120.00562 * 359.97438 * 9 7 6 34 34 H 1.08997 * 109.46794 * 60.00262 * 12 10 9 35 35 H 1.09005 * 109.47119 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47200 * 300.00119 * 12 10 9 37 37 H 1.08996 * 109.47160 * 304.99933 * 13 10 9 38 38 H 1.09003 * 109.46780 * 184.99983 * 13 10 9 39 39 H 1.09001 * 109.47056 * 59.99890 * 16 14 13 40 40 H 1.09000 * 109.47395 * 179.97438 * 16 14 13 41 41 H 1.09003 * 109.47112 * 299.99827 * 16 14 13 42 42 H 1.00898 * 110.99995 * 328.95225 * 17 14 13 43 43 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 44 44 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 45 45 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 46 46 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3227 1.0204 0.0000 4 8 3.4651 0.6265 -0.0005 5 7 3.6101 -0.5737 0.0042 6 6 2.4279 -1.1520 -0.0006 7 6 2.1033 -2.5989 -0.0002 8 8 0.9436 -2.9612 0.0009 9 7 3.0946 -3.5119 -0.0008 10 6 2.7739 -4.9413 0.0002 11 1 1.8736 -5.1113 0.5907 12 6 2.5380 -5.4121 -1.4364 13 6 3.9386 -5.7249 0.6089 14 6 4.0946 -5.3441 2.0825 15 1 4.2058 -4.2632 2.1686 16 6 5.3339 -6.0319 2.6585 17 7 2.9045 -5.7749 2.8282 18 6 2.7172 -4.9607 4.0365 19 6 1.4893 -5.4304 4.7734 20 8 0.8350 -6.3530 4.3353 21 7 1.1190 -4.8260 5.9197 22 6 0.0023 -5.2537 6.5903 23 1 -0.5808 -6.0746 6.1997 24 6 -0.3799 -4.6303 7.7718 25 7 0.3293 -3.6311 8.2467 26 14 -1.9010 -5.2134 8.6859 27 1 -1.7319 -6.6378 9.0702 28 1 -2.0902 -4.3907 9.9076 29 1 -3.0900 -5.0758 7.8069 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 4.0205 -3.2226 -0.0019 34 1 3.4383 -5.2421 -2.0268 35 1 2.2998 -6.4758 -1.4357 36 1 1.7083 -4.8538 -1.8700 37 1 4.8569 -5.4859 0.0726 38 1 3.7387 -6.7935 0.5289 39 1 6.2170 -5.7123 2.1052 40 1 5.4454 -5.7602 3.7082 41 1 5.2227 -7.1128 2.5724 42 1 2.0824 -5.7489 2.2437 43 1 2.5935 -3.9151 3.7546 44 1 3.5897 -5.0622 4.6819 45 1 1.6424 -4.0885 6.2702 46 1 0.0627 -3.1961 9.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146743306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:59 Heat of formation + Delta-G solvation = 8.929534 kcal Electronic energy + Delta-G solvation = -29863.767558 eV Core-core repulsion = 25599.537737 eV Total energy + Delta-G solvation = -4264.229821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.04943 -41.25032 -40.22913 -38.67597 -36.52225 -36.21491 -35.94053 -35.76907 -33.35488 -32.84848 -31.59976 -30.42006 -28.23416 -27.63509 -27.03429 -25.70827 -23.81537 -22.98697 -21.98827 -21.21762 -21.15210 -20.22174 -19.95894 -19.65324 -18.34860 -17.90568 -17.47872 -17.00783 -16.59167 -16.27707 -16.23824 -15.74510 -15.58036 -15.45864 -15.17715 -14.69738 -14.55492 -14.50026 -14.32921 -13.99480 -13.60073 -13.49323 -13.34603 -13.24585 -13.09315 -13.00654 -12.90807 -12.85397 -12.72011 -12.46169 -12.37900 -12.27439 -12.12989 -11.95078 -11.59015 -11.54816 -11.52194 -11.45561 -10.42239 -10.33496 -10.04586 -9.35816 -8.48720 -5.98026 -0.46471 0.15494 1.38255 1.39982 1.42617 1.51327 1.69735 2.01216 2.20135 2.27506 2.29307 2.71759 2.90425 3.17907 3.45298 3.49784 3.56553 3.68770 3.82620 4.00701 4.07993 4.22732 4.33219 4.38437 4.44214 4.50844 4.52371 4.59567 4.62599 4.70306 4.77302 4.90501 4.98075 5.00356 5.02444 5.18454 5.25830 5.29579 5.38250 5.46227 5.88795 6.10100 6.12719 6.38498 6.56750 6.77529 7.09504 7.25608 7.51995 8.07233 8.68563 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008851 B = 0.003221 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.547528 B = 8692.107052 C =10511.080344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.060 3.940 3 N -0.362 5.362 4 O 0.349 5.651 5 N -0.315 5.315 6 C -0.055 4.055 7 C 0.603 3.397 8 O -0.536 6.536 9 N -0.690 5.690 10 C 0.135 3.865 11 H 0.065 0.935 12 C -0.155 4.155 13 C -0.118 4.118 14 C 0.078 3.922 15 H 0.044 0.956 16 C -0.137 4.137 17 N -0.673 5.673 18 C 0.069 3.931 19 C 0.436 3.564 20 O -0.620 6.620 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.417 0.583 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.340 0.660 43 H 0.049 0.951 44 H 0.102 0.898 45 H 0.395 0.605 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.975 6.148 -20.156 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 N -0.088 5.088 4 O 0.122 5.878 5 N -0.034 5.034 6 C -0.220 4.220 7 C 0.385 3.615 8 O -0.411 6.411 9 N -0.343 5.343 10 C 0.031 3.969 11 H 0.083 0.917 12 C -0.214 4.214 13 C -0.156 4.156 14 C -0.031 4.031 15 H 0.062 0.938 16 C -0.195 4.195 17 N -0.308 5.308 18 C -0.064 4.064 19 C 0.224 3.776 20 O -0.506 6.506 21 N -0.210 5.210 22 C -0.465 4.465 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.193 1.193 29 H -0.197 1.197 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.130 0.870 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.067 0.933 44 H 0.120 0.880 45 H 0.228 0.772 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.984 5.531 -19.938 23.425 hybrid contribution -1.185 0.709 0.666 1.533 sum 9.799 6.241 -19.272 22.503 Atomic orbital electron populations 1.20474 0.81582 1.06058 1.05427 1.26631 1.01350 0.84785 0.97746 1.75090 0.91127 1.23947 1.18664 1.85046 1.23352 1.16426 1.63000 1.75302 1.22650 0.93003 1.12449 1.26049 0.88711 0.98335 1.08942 1.16590 0.85681 0.82008 0.77180 1.90860 1.20099 1.79883 1.50289 1.45893 1.09447 1.06292 1.72689 1.21248 0.99265 0.77953 0.98427 0.91698 1.22105 1.02542 1.02380 0.94327 1.22090 0.98594 1.01580 0.93316 1.21727 0.90733 0.97536 0.93118 0.93820 1.21788 0.96048 1.01114 1.00520 1.60273 1.07182 1.55643 1.07699 1.21509 0.96008 0.95004 0.93881 1.20849 0.88592 0.85214 0.82981 1.90483 1.58052 1.32817 1.69294 1.41927 1.25563 1.32237 1.21231 1.19648 1.04414 1.17039 1.05444 0.90288 1.26054 1.01973 0.95827 0.97297 1.69672 1.40756 1.23018 1.22721 0.84986 0.77482 0.78357 0.77510 1.19586 1.19341 1.19673 0.88403 0.87190 0.88407 0.74565 0.90158 0.89982 0.93647 0.87007 0.88314 0.89839 0.93939 0.92360 0.83945 0.93307 0.88003 0.77168 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.22 71.23 0.73 -0.60 16 2 C 0.06 1.28 7.79 45.17 0.35 1.63 16 3 N -0.36 -7.63 12.22 -51.80 -0.63 -8.26 16 4 O 0.35 6.94 11.65 140.86 1.64 8.59 16 5 N -0.31 -6.29 12.13 -52.05 -0.63 -6.92 16 6 C -0.06 -1.22 7.56 44.29 0.34 -0.89 16 7 C 0.60 14.47 7.81 86.92 0.68 15.15 16 8 O -0.54 -16.33 15.62 -3.72 -0.06 -16.39 16 9 N -0.69 -12.55 4.45 -444.99 -1.98 -14.53 16 10 C 0.13 2.49 2.48 44.99 0.11 2.60 16 11 H 0.06 1.70 5.72 -2.39 -0.01 1.68 16 12 C -0.16 -2.36 9.48 71.98 0.68 -1.67 16 13 C -0.12 -1.75 4.35 30.59 0.13 -1.62 16 14 C 0.08 1.64 2.59 44.91 0.12 1.75 16 15 H 0.04 0.91 7.28 -2.39 -0.02 0.89 16 16 C -0.14 -2.58 9.41 71.98 0.68 -1.90 16 17 N -0.67 -21.21 5.93 -495.56 -2.94 -24.16 16 18 C 0.07 2.49 5.97 85.56 0.51 3.00 16 19 C 0.44 21.66 7.82 87.66 0.69 22.34 16 20 O -0.62 -35.44 15.78 -3.07 -0.05 -35.49 16 21 N -0.57 -30.49 5.29 -306.98 -1.62 -32.11 16 22 C -0.34 -19.60 9.68 84.04 0.81 -18.78 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 25 N -0.92 -50.66 13.05 21.66 0.28 -50.37 16 26 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.78 7.31 -2.39 -0.02 1.76 16 33 H 0.42 5.67 8.46 -92.71 -0.78 4.89 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.04 0.92 7.45 -2.39 -0.02 0.90 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.34 11.70 6.11 -89.70 -0.55 11.15 16 43 H 0.05 1.67 8.06 -2.39 -0.02 1.65 16 44 H 0.10 3.37 7.44 -2.39 -0.02 3.35 16 45 H 0.39 20.06 7.90 -92.71 -0.73 19.33 16 46 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.50 392.13 1.32 -71.19 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -1.01 Total: 41.93 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.29 Total: 20.84 kcal Atomic # 7 Polarization: -128.83 SS G_CDS: -7.52 Total: -136.35 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: 1.53 Total: -43.30 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -72.50 1.32 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.117 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds