Wall clock time and date at job start Tue Mar 31 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30649 * 128.64583 * 2 1 4 4 O 1.20827 * 109.61998 * 180.02562 * 3 2 1 5 5 N 1.20904 * 115.91259 * 359.73564 * 4 3 2 6 6 C 1.31601 * 109.17445 * 0.43441 * 5 4 3 7 7 C 1.48278 * 128.70941 * 179.88140 * 6 5 4 8 8 O 1.21497 * 120.00241 * 179.66822 * 7 6 5 9 9 N 1.34775 * 120.00098 * 359.67203 * 7 6 5 10 10 C 1.46504 * 120.00154 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47402 * 34.99646 * 10 9 7 12 12 C 1.52999 * 109.46985 * 274.99643 * 10 9 7 13 13 C 1.52998 * 109.47377 * 154.99902 * 10 9 7 14 14 C 1.53007 * 109.46975 * 295.00055 * 13 10 9 15 15 H 1.09000 * 109.46831 * 54.99657 * 14 13 10 16 16 C 1.52998 * 109.47211 * 175.00015 * 14 13 10 17 17 N 1.46906 * 109.47010 * 295.00047 * 14 13 10 18 18 C 1.46898 * 110.99888 * 155.00014 * 17 14 13 19 19 C 1.50705 * 109.46661 * 180.02562 * 18 17 14 20 20 O 1.21288 * 120.00125 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99549 * 179.97438 * 19 18 17 22 22 C 1.37103 * 120.00062 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99229 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00207 * 179.97438 * 22 21 19 25 25 N 1.31408 * 120.00252 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00305 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47102 * 89.99542 * 26 24 22 28 28 H 1.48493 * 109.47421 * 209.99846 * 26 24 22 29 29 H 1.48497 * 109.46772 * 330.00472 * 26 24 22 30 30 H 1.09005 * 109.46800 * 269.97335 * 1 2 3 31 31 H 1.09006 * 109.47014 * 29.96955 * 1 2 3 32 32 H 1.09001 * 109.47304 * 149.96984 * 1 2 3 33 33 H 0.96997 * 120.00123 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47525 * 299.99978 * 12 10 9 35 35 H 1.09007 * 109.46816 * 60.00122 * 12 10 9 36 36 H 1.09000 * 109.47021 * 179.97438 * 12 10 9 37 37 H 1.08995 * 109.47218 * 175.00396 * 13 10 9 38 38 H 1.09000 * 109.47102 * 54.99454 * 13 10 9 39 39 H 1.09001 * 109.47093 * 179.97438 * 16 14 13 40 40 H 1.09002 * 109.47121 * 299.99744 * 16 14 13 41 41 H 1.09002 * 109.46901 * 59.99641 * 16 14 13 42 42 H 1.00902 * 110.99923 * 278.95955 * 17 14 13 43 43 H 1.08995 * 109.47296 * 299.99911 * 18 17 14 44 44 H 1.08997 * 109.47334 * 60.00212 * 18 17 14 45 45 H 0.97003 * 120.00664 * 0.02562 * 21 19 18 46 46 H 0.97002 * 120.00635 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3229 1.0204 0.0000 4 8 3.4652 0.6265 -0.0005 5 7 3.6101 -0.5738 0.0041 6 6 2.4279 -1.1520 -0.0007 7 6 2.1033 -2.5988 -0.0004 8 8 0.9436 -2.9612 0.0006 9 7 3.0946 -3.5119 -0.0012 10 6 2.7739 -4.9414 -0.0014 11 1 1.8726 -5.1115 -0.5903 12 6 2.5404 -5.4119 1.4356 13 6 3.9374 -5.7251 -0.6118 14 6 4.0911 -5.3445 -2.0858 15 1 4.2022 -4.2637 -2.1722 16 6 5.3295 -6.0324 -2.6638 17 7 2.8997 -5.7753 -2.8295 18 6 2.7104 -4.9614 -4.0376 19 6 1.4813 -5.4313 -4.7723 20 8 0.8277 -6.3537 -4.3329 21 7 1.1085 -4.8264 -5.9175 22 6 -0.0094 -5.2541 -6.5863 23 1 -0.5914 -6.0755 -6.1950 24 6 -0.3941 -4.6302 -7.7666 25 7 -1.4658 -5.0398 -8.4073 26 14 0.6122 -3.2091 -8.4430 27 1 1.6609 -3.7344 -9.3537 28 1 -0.2769 -2.2855 -9.1924 29 1 1.2526 -2.4778 -7.3204 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 4.0204 -3.2226 -0.0023 34 1 3.4416 -5.2418 2.0247 35 1 1.7113 -4.8535 1.8705 36 1 2.3013 -6.4753 1.4354 37 1 3.7377 -6.7936 -0.5314 38 1 4.8567 -5.4860 -0.0772 39 1 5.4386 -5.7616 -3.7140 40 1 6.2135 -5.7127 -2.1120 41 1 5.2183 -7.1133 -2.5772 42 1 2.9519 -6.7565 -3.0590 43 1 2.5872 -3.9158 -3.7557 44 1 3.5818 -5.0631 -4.6845 45 1 1.6314 -4.0889 -6.2692 46 1 -1.7342 -4.6045 -9.2316 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001146743309.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:02 Heat of formation + Delta-G solvation = 12.242348 kcal Electronic energy + Delta-G solvation = -29910.354364 eV Core-core repulsion = 25646.268198 eV Total energy + Delta-G solvation = -4264.086166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.00792 -41.08318 -40.34738 -38.56477 -36.55726 -36.19933 -35.92919 -35.78706 -33.78082 -32.85555 -31.49699 -30.37590 -28.09542 -27.67946 -26.96235 -25.49209 -23.75692 -22.87709 -21.91135 -21.47285 -21.29612 -20.32114 -20.18135 -19.59036 -18.27402 -17.79911 -17.29236 -17.01528 -16.52712 -16.20422 -16.10015 -15.75591 -15.31998 -15.17100 -14.99780 -14.86529 -14.58142 -14.47506 -14.42890 -14.15920 -14.02739 -13.64492 -13.40103 -13.20417 -13.05019 -13.02592 -12.97326 -12.85165 -12.69039 -12.44710 -12.32534 -12.12653 -12.00515 -11.75822 -11.70345 -11.53535 -11.47727 -11.40704 -10.45831 -10.26706 -10.22084 -9.25670 -8.43180 -6.03855 -0.40262 0.19476 1.26864 1.31772 1.40801 1.52688 1.80368 1.93287 2.19991 2.25957 2.34508 2.71836 2.79722 3.13055 3.43183 3.53865 3.65264 3.76746 4.01702 4.05639 4.08967 4.24375 4.35355 4.41358 4.49600 4.52786 4.54137 4.58146 4.65076 4.77465 4.81105 4.89504 5.02295 5.03868 5.10718 5.23453 5.30507 5.36942 5.45209 5.51735 5.90396 6.09119 6.26228 6.45648 6.57794 6.86071 6.91724 7.30114 7.37362 7.93828 8.74592 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008518 B = 0.003502 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.261997 B = 7993.653074 C = 9852.673589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.059 3.941 3 N -0.363 5.363 4 O 0.348 5.652 5 N -0.315 5.315 6 C -0.052 4.052 7 C 0.602 3.398 8 O -0.538 6.538 9 N -0.687 5.687 10 C 0.145 3.855 11 H 0.072 0.928 12 C -0.158 4.158 13 C -0.105 4.105 14 C 0.080 3.920 15 H 0.078 0.922 16 C -0.178 4.178 17 N -0.677 5.677 18 C 0.067 3.933 19 C 0.448 3.552 20 O -0.610 6.610 21 N -0.593 5.593 22 C -0.329 4.329 23 H 0.056 0.944 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.254 1.254 28 H -0.274 1.274 29 H -0.237 1.237 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.346 0.654 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.388 0.612 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.597 9.790 19.679 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.089 5.089 4 O 0.121 5.879 5 N -0.035 5.035 6 C -0.217 4.217 7 C 0.384 3.616 8 O -0.414 6.414 9 N -0.339 5.339 10 C 0.041 3.959 11 H 0.091 0.909 12 C -0.216 4.216 13 C -0.143 4.143 14 C -0.029 4.029 15 H 0.096 0.904 16 C -0.237 4.237 17 N -0.309 5.309 18 C -0.066 4.066 19 C 0.236 3.764 20 O -0.494 6.494 21 N -0.234 5.234 22 C -0.458 4.458 23 H 0.074 0.926 24 C -0.211 4.211 25 N -0.574 5.574 26 Si 0.782 3.218 27 H -0.178 1.178 28 H -0.198 1.198 29 H -0.161 1.161 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.166 0.834 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.223 0.777 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.706 9.929 20.195 28.635 hybrid contribution 0.092 -0.184 -1.495 1.509 sum 17.798 9.745 18.700 27.594 Atomic orbital electron populations 1.20464 0.81729 1.05587 1.05765 1.26606 1.01292 0.84865 0.97869 1.75083 0.91152 1.23938 1.18705 1.85038 1.23309 1.16486 1.63044 1.75299 1.22591 0.92935 1.12634 1.26081 0.88636 0.98366 1.08641 1.16585 0.85725 0.81938 0.77338 1.90864 1.20312 1.79852 1.50327 1.45845 1.09138 1.06480 1.72421 1.21091 1.00200 0.77435 0.97149 0.90937 1.22133 1.02098 1.02030 0.95314 1.21878 0.97796 1.00999 0.93604 1.21735 0.87402 0.99927 0.93877 0.90385 1.22458 0.98757 1.01284 1.01185 1.60169 1.40760 1.07929 1.22078 1.21548 0.93947 0.98960 0.92124 1.20993 0.88824 0.84764 0.81815 1.90541 1.57869 1.32750 1.68257 1.42055 1.25638 1.33002 1.22739 1.19012 1.03823 1.17234 1.05714 0.92610 1.26067 0.97693 1.01413 0.95973 1.69796 1.25934 1.43496 1.18146 0.85405 0.78816 0.77824 0.79734 1.17835 1.19850 1.16077 0.87181 0.87784 0.89249 0.74845 0.90482 0.94159 0.90534 0.89311 0.87867 0.93231 0.89815 0.92124 0.83444 0.88627 0.90692 0.77715 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.22 71.24 0.73 -0.60 16 2 C 0.06 1.22 7.79 45.17 0.35 1.58 16 3 N -0.36 -7.37 12.22 -51.82 -0.63 -8.00 16 4 O 0.35 6.59 11.65 140.86 1.64 8.23 16 5 N -0.31 -5.99 12.13 -52.08 -0.63 -6.62 16 6 C -0.05 -1.13 7.56 44.29 0.34 -0.79 16 7 C 0.60 14.66 7.81 86.91 0.68 15.34 16 8 O -0.54 -17.14 15.62 -3.71 -0.06 -17.20 16 9 N -0.69 -12.61 4.45 -445.00 -1.98 -14.58 16 10 C 0.14 2.83 2.52 44.99 0.11 2.94 16 11 H 0.07 2.13 7.05 -2.39 -0.02 2.12 16 12 C -0.16 -2.65 9.48 71.98 0.68 -1.96 16 13 C -0.10 -1.47 4.43 30.60 0.14 -1.33 16 14 C 0.08 1.40 2.53 44.92 0.11 1.52 16 15 H 0.08 1.34 7.28 -2.39 -0.02 1.33 16 16 C -0.18 -2.48 9.16 71.98 0.66 -1.82 16 17 N -0.68 -18.69 5.24 -495.56 -2.60 -21.29 16 18 C 0.07 2.08 5.97 85.56 0.51 2.59 16 19 C 0.45 20.68 7.82 87.66 0.69 21.37 16 20 O -0.61 -34.28 15.78 -3.05 -0.05 -34.33 16 21 N -0.59 -28.71 5.09 -306.99 -1.56 -30.28 16 22 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16 23 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 24 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 25 N -0.93 -56.92 13.96 21.66 0.30 -56.61 16 26 Si 0.96 39.58 27.74 68.60 1.90 41.49 16 27 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 28 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 29 H -0.24 -8.41 6.52 99.48 0.65 -7.76 16 30 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.10 1.41 8.14 -2.38 -0.02 1.40 16 32 H 0.09 1.86 7.31 -2.39 -0.02 1.84 16 33 H 0.41 5.41 8.46 -92.71 -0.78 4.63 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.05 0.77 7.45 -2.39 -0.02 0.76 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 42 H 0.35 10.21 8.17 -89.69 -0.73 9.47 16 43 H 0.10 2.76 8.05 -2.39 -0.02 2.74 16 44 H 0.08 1.90 7.44 -2.39 -0.02 1.88 16 45 H 0.39 15.73 5.76 -92.71 -0.53 15.19 16 46 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -80.19 391.51 1.59 -78.60 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -1.06 Total: 40.81 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 6.32 Total: 19.80 kcal Atomic # 7 Polarization: -130.29 SS G_CDS: -7.10 Total: -137.39 kcal Atomic # 8 Polarization: -44.83 SS G_CDS: 1.53 Total: -43.30 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 1.90 Total: 41.49 kcal Total: -80.19 1.59 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146743309.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.839 kcal (2) G-P(sol) polarization free energy of solvation -80.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds