Wall clock time and date at job start Tue Mar 31 2020 22:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47584 * 2 1 4 4 C 1.53007 * 109.46820 * 240.00220 * 2 1 3 5 5 O 1.45194 * 109.47175 * 120.00392 * 2 1 3 6 6 C 1.34640 * 117.00178 * 59.99942 * 5 2 1 7 7 O 1.21507 * 120.00218 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99954 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00041 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46692 * 324.99358 * 9 8 6 11 11 C 1.50696 * 109.47650 * 84.99243 * 9 8 6 12 12 H 1.07995 * 120.00399 * 240.00233 * 11 9 8 13 13 C 1.37878 * 119.99686 * 60.00242 * 11 9 8 14 14 N 1.31515 * 119.99977 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99961 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46940 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47384 * 119.99779 * 15 13 11 18 18 H 1.48498 * 109.47391 * 240.00123 * 15 13 11 19 19 C 1.50700 * 109.47213 * 205.00054 * 9 8 6 20 20 O 1.21280 * 119.99675 * 359.97438 * 19 9 8 21 21 N 1.34779 * 119.99938 * 179.97438 * 19 9 8 22 22 C 1.46499 * 119.99508 * 179.97438 * 21 19 9 23 23 C 1.53005 * 109.46852 * 179.97438 * 22 21 19 24 24 N 1.46499 * 109.47396 * 180.02562 * 23 22 21 25 25 C 1.35308 * 125.86944 * 124.99861 * 24 23 22 26 26 C 1.35347 * 106.17713 * 180.02562 * 25 24 23 27 27 N 1.33774 * 106.49812 * 0.02562 * 26 25 24 28 28 N 1.28637 * 108.88333 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46619 * 300.00016 * 1 2 3 30 30 H 1.09002 * 109.46939 * 59.99731 * 1 2 3 31 31 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47455 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46827 * 300.00489 * 3 2 1 34 34 H 1.09004 * 109.46777 * 59.99938 * 3 2 1 35 35 H 1.09001 * 109.47323 * 299.99951 * 4 2 1 36 36 H 1.08993 * 109.47123 * 60.00257 * 4 2 1 37 37 H 1.08999 * 109.46924 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00433 * 359.97438 * 8 6 5 39 39 H 0.97001 * 119.99520 * 179.97438 * 14 13 11 40 40 H 0.96999 * 119.99946 * 359.97438 * 21 19 9 41 41 H 1.09001 * 109.46944 * 60.00222 * 22 21 19 42 42 H 1.08993 * 109.47647 * 299.99694 * 22 21 19 43 43 H 1.09001 * 109.46828 * 60.00563 * 23 22 21 44 44 H 1.08993 * 109.47081 * 300.00453 * 23 22 21 45 45 H 1.07997 * 126.91159 * 0.02959 * 25 24 23 46 46 H 1.08002 * 126.75518 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 1.6741 -4.0670 2.5829 10 1 0.6652 -4.2096 2.1956 11 6 2.6322 -4.9506 1.8264 12 1 2.2676 -5.5908 1.0368 13 6 3.9742 -4.9416 2.1423 14 7 4.4182 -4.1615 3.1036 15 14 5.1620 -6.0362 1.2041 16 1 4.4170 -6.8110 0.1795 17 1 6.1900 -5.1957 0.5392 18 1 5.8232 -6.9727 2.1481 19 6 1.7061 -4.4279 4.0457 20 8 2.0262 -3.5965 4.8685 21 7 1.3789 -5.6747 4.4395 22 6 1.4106 -6.0256 5.8615 23 6 0.9986 -7.4889 6.0349 24 7 1.0297 -7.8398 7.4569 25 6 0.0036 -8.3631 8.1670 26 6 0.4642 -8.5291 9.4288 27 7 1.7327 -8.1042 9.4292 28 7 2.0371 -7.7014 8.2461 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 2.6268 -2.2367 3.0832 39 1 5.3624 -4.1555 3.3260 40 1 1.1225 -6.3396 3.7814 41 1 0.7180 -5.3863 6.4090 42 1 2.4195 -5.8836 6.2485 43 1 1.6908 -8.1286 5.4874 44 1 -0.0105 -7.6306 5.6480 45 1 -0.9842 -8.6006 7.8006 46 1 -0.0846 -8.9257 10.2702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180779557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:22 Heat of formation + Delta-G solvation = -18.006655 kcal Electronic energy + Delta-G solvation = -29939.235799 eV Core-core repulsion = 25673.837938 eV Total energy + Delta-G solvation = -4265.397862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.28919 -39.88334 -38.81052 -36.54744 -35.72373 -33.96438 -33.49440 -33.39285 -31.88575 -31.10514 -29.54134 -27.60018 -27.11477 -27.01236 -24.49127 -23.48918 -22.70619 -21.53282 -21.22809 -19.76008 -19.23278 -17.86728 -17.35274 -16.85793 -16.61426 -15.91926 -15.57114 -15.32614 -15.14229 -15.07034 -14.96402 -14.73529 -14.13424 -13.95201 -13.81280 -13.58874 -13.34805 -12.88434 -12.52998 -12.40914 -12.22015 -12.09172 -11.88358 -11.76132 -11.52421 -11.46715 -11.37572 -11.17697 -11.09470 -10.96425 -10.80403 -10.78489 -10.31173 -10.20252 -10.04911 -9.71745 -9.47601 -9.28012 -9.01993 -8.59149 -8.42351 -7.76325 -6.32201 -4.48425 1.52794 2.16568 2.52998 3.04655 3.16650 3.24411 3.26692 3.78430 3.89929 4.07509 4.21738 4.24489 4.52257 4.61115 4.91327 4.93166 4.96984 5.09002 5.11524 5.11780 5.25289 5.36804 5.53461 5.69796 5.76220 5.80649 5.93802 5.94765 6.01511 6.08610 6.11756 6.21181 6.24164 6.24900 6.45765 6.53297 6.64909 6.76134 7.07825 7.26788 7.58836 7.60894 7.79919 8.25078 8.46029 8.55810 8.79696 9.21218 9.29112 9.56560 10.70453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.002798 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.959548 B =10004.885654 C =11226.557796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.647 3.353 7 O -0.590 6.590 8 N -0.662 5.662 9 C 0.269 3.731 10 H 0.071 0.929 11 C -0.541 4.541 12 H 0.074 0.926 13 C 0.079 3.921 14 N -0.855 5.855 15 Si 0.898 3.102 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.546 3.454 20 O -0.547 6.547 21 N -0.730 5.730 22 C 0.118 3.882 23 C 0.104 3.896 24 N -0.284 5.284 25 C -0.051 4.051 26 C -0.056 4.056 27 N -0.276 5.276 28 N -0.075 5.075 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.407 0.593 39 H 0.269 0.731 40 H 0.401 0.599 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.190 0.810 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 -2.301 0.784 10.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.289 6.289 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.319 5.319 9 C 0.165 3.835 10 H 0.088 0.912 11 C -0.580 4.580 12 H 0.092 0.908 13 C -0.130 4.130 14 N -0.489 5.489 15 Si 0.725 3.275 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.334 3.666 20 O -0.423 6.423 21 N -0.386 5.386 22 C -0.008 4.008 23 C -0.018 4.018 24 N -0.078 5.078 25 C -0.202 4.202 26 C -0.214 4.214 27 N -0.142 5.142 28 N -0.055 5.055 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.243 0.757 39 H 0.079 0.921 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.207 0.793 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.528 -1.357 1.175 8.715 hybrid contribution -0.151 -1.075 -0.754 1.321 sum -8.680 -2.432 0.422 9.024 Atomic orbital electron populations 1.22495 0.94696 1.05072 1.01468 1.21815 0.93878 0.91210 0.83219 1.21827 1.02102 0.93344 1.02344 1.22488 1.01415 1.03888 0.96007 1.86307 1.72189 1.25165 1.45276 1.18031 0.79435 0.79526 0.83124 1.90755 1.43336 1.70367 1.43778 1.45089 1.52556 1.12127 1.22142 1.18246 0.97388 0.79108 0.88751 0.91167 1.21216 0.92011 1.24665 1.20077 0.90835 1.25123 0.98618 0.94947 0.94292 1.69927 1.15664 1.35935 1.27373 0.86431 0.80844 0.80310 0.79895 1.19373 1.20748 1.20776 1.21156 0.73241 0.80475 0.91740 1.90557 1.46889 1.49521 1.55284 1.45449 1.73073 1.14207 1.05828 1.21208 1.03355 0.91095 0.85125 1.22333 1.05510 0.99006 0.74931 1.47401 1.08921 1.40292 1.11224 1.23711 0.96624 1.06510 0.93354 1.23623 0.93466 1.06708 0.97571 1.75155 1.13693 1.13402 1.11901 1.78430 1.12164 1.19022 0.95917 0.92672 0.92025 0.89111 0.91734 0.90854 0.91836 0.88890 0.92151 0.92509 0.75697 0.92088 0.76441 0.91675 0.90089 0.87284 0.86964 0.79259 0.79462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 8.37 37.16 0.31 -2.40 16 2 C 0.14 2.23 1.13 -90.62 -0.10 2.13 16 3 C -0.14 -1.77 8.85 37.16 0.33 -1.45 16 4 C -0.18 -2.92 8.37 37.16 0.31 -2.61 16 5 O -0.37 -7.69 9.94 -40.33 -0.40 -8.09 16 6 C 0.65 14.74 8.01 54.06 0.43 15.17 16 7 O -0.59 -13.82 11.54 -19.28 -0.22 -14.04 16 8 N -0.66 -15.73 4.36 -61.01 -0.27 -15.99 16 9 C 0.27 6.17 2.57 -70.23 -0.18 5.99 16 10 H 0.07 1.55 7.58 -51.93 -0.39 1.16 16 11 C -0.54 -13.09 8.66 -34.44 -0.30 -13.39 16 12 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 13 C 0.08 1.96 5.23 -17.82 -0.09 1.87 16 14 N -0.86 -22.45 11.58 55.43 0.64 -21.81 16 15 Si 0.90 19.81 29.54 -169.99 -5.02 14.79 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.55 11.93 6.00 -10.98 -0.07 11.86 16 20 O -0.55 -13.66 15.79 5.56 0.09 -13.57 16 21 N -0.73 -12.29 5.46 -60.29 -0.33 -12.62 16 22 C 0.12 1.75 5.80 -4.04 -0.02 1.73 16 23 C 0.10 1.06 6.57 -4.04 -0.03 1.03 16 24 N -0.28 -3.43 3.44 -61.26 -0.21 -3.64 16 25 C -0.05 -0.47 11.57 -17.05 -0.20 -0.67 16 26 C -0.06 -0.60 12.05 -17.74 -0.21 -0.82 16 27 N -0.28 -4.17 12.41 30.24 0.38 -3.80 16 28 N -0.08 -1.19 12.91 60.35 0.78 -0.41 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.78 5.88 -51.93 -0.31 1.47 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 10.19 7.58 -40.82 -0.31 9.88 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.40 5.66 8.36 -40.82 -0.34 5.32 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 43 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.11 0.72 8.07 -51.93 -0.42 0.30 16 45 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.19 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -33.26 388.45 -5.22 -38.48 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -6.69 Total: 16.39 kcal Atomic # 6 Polarization: 18.27 SS G_CDS: 0.18 Total: 18.45 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.99 Total: -58.26 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -0.54 Total: -35.70 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.26 -5.22 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180779557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.476 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds