Wall clock time and date at job start Tue Mar 31 2020 22:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47584 * 2 1 4 4 C 1.53007 * 109.46820 * 240.00220 * 2 1 3 5 5 O 1.45194 * 109.47175 * 120.00392 * 2 1 3 6 6 C 1.34640 * 117.00178 * 59.99942 * 5 2 1 7 7 O 1.21507 * 120.00218 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99954 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00041 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46692 * 324.99358 * 9 8 6 11 11 C 1.50696 * 109.47650 * 84.99243 * 9 8 6 12 12 H 1.07995 * 120.00399 * 240.00233 * 11 9 8 13 13 C 1.37878 * 119.99686 * 60.00242 * 11 9 8 14 14 N 1.31515 * 119.99977 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99961 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46940 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47384 * 119.99779 * 15 13 11 18 18 H 1.48498 * 109.47391 * 240.00123 * 15 13 11 19 19 C 1.50700 * 109.47213 * 205.00054 * 9 8 6 20 20 O 1.21280 * 119.99675 * 359.97438 * 19 9 8 21 21 N 1.34779 * 119.99938 * 179.97438 * 19 9 8 22 22 C 1.46499 * 119.99508 * 179.97438 * 21 19 9 23 23 C 1.53005 * 109.46852 * 179.97438 * 22 21 19 24 24 N 1.46499 * 109.47396 * 180.02562 * 23 22 21 25 25 C 1.35308 * 125.86944 * 124.99861 * 24 23 22 26 26 C 1.35347 * 106.17713 * 180.02562 * 25 24 23 27 27 N 1.33774 * 106.49812 * 0.02562 * 26 25 24 28 28 N 1.28637 * 108.88333 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46619 * 300.00016 * 1 2 3 30 30 H 1.09002 * 109.46939 * 59.99731 * 1 2 3 31 31 H 1.09001 * 109.47132 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47455 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.46827 * 300.00489 * 3 2 1 34 34 H 1.09004 * 109.46777 * 59.99938 * 3 2 1 35 35 H 1.09001 * 109.47323 * 299.99951 * 4 2 1 36 36 H 1.08993 * 109.47123 * 60.00257 * 4 2 1 37 37 H 1.08999 * 109.46924 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00433 * 359.97438 * 8 6 5 39 39 H 0.97001 * 119.99520 * 179.97438 * 14 13 11 40 40 H 0.96999 * 119.99946 * 359.97438 * 21 19 9 41 41 H 1.09001 * 109.46944 * 60.00222 * 22 21 19 42 42 H 1.08993 * 109.47647 * 299.99694 * 22 21 19 43 43 H 1.09001 * 109.46828 * 60.00563 * 23 22 21 44 44 H 1.08993 * 109.47081 * 300.00453 * 23 22 21 45 45 H 1.07997 * 126.91159 * 0.02959 * 25 24 23 46 46 H 1.08002 * 126.75518 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0672 -2.6655 2.4170 9 6 1.6741 -4.0670 2.5829 10 1 0.6652 -4.2096 2.1956 11 6 2.6322 -4.9506 1.8264 12 1 2.2676 -5.5908 1.0368 13 6 3.9742 -4.9416 2.1423 14 7 4.4182 -4.1615 3.1036 15 14 5.1620 -6.0362 1.2041 16 1 4.4170 -6.8110 0.1795 17 1 6.1900 -5.1957 0.5392 18 1 5.8232 -6.9727 2.1481 19 6 1.7061 -4.4279 4.0457 20 8 2.0262 -3.5965 4.8685 21 7 1.3789 -5.6747 4.4395 22 6 1.4106 -6.0256 5.8615 23 6 0.9986 -7.4889 6.0349 24 7 1.0297 -7.8398 7.4569 25 6 0.0036 -8.3631 8.1670 26 6 0.4642 -8.5291 9.4288 27 7 1.7327 -8.1042 9.4292 28 7 2.0371 -7.7014 8.2461 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2494 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2491 38 1 2.6268 -2.2367 3.0832 39 1 5.3624 -4.1555 3.3260 40 1 1.1225 -6.3396 3.7814 41 1 0.7180 -5.3863 6.4090 42 1 2.4195 -5.8836 6.2485 43 1 1.6908 -8.1286 5.4874 44 1 -0.0105 -7.6306 5.6480 45 1 -0.9842 -8.6006 7.8006 46 1 -0.0846 -8.9257 10.2702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180779557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:21 Heat of formation + Delta-G solvation = -44.191174 kcal Electronic energy + Delta-G solvation = -29940.371245 eV Core-core repulsion = 25673.837938 eV Total energy + Delta-G solvation = -4266.533308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.17441 -41.52654 -40.45301 -38.08771 -36.96100 -35.78341 -34.97021 -34.69761 -33.71681 -31.95167 -30.87812 -29.19645 -28.26446 -28.21469 -26.05218 -24.92699 -23.56459 -22.94362 -22.31319 -21.40004 -20.81915 -19.36119 -18.71303 -18.31022 -17.86185 -17.31907 -17.02204 -16.86928 -16.66267 -16.63649 -16.24845 -15.75816 -15.48001 -15.28617 -15.22406 -14.95938 -14.72600 -14.30034 -14.13432 -13.82869 -13.43932 -13.23730 -13.12454 -12.97324 -12.92311 -12.76376 -12.74981 -12.69373 -12.47265 -12.37365 -12.21789 -12.12191 -11.86385 -11.79532 -11.21192 -11.17050 -11.05784 -10.77729 -10.44370 -10.31692 -9.94687 -9.59963 -8.23687 -6.44737 0.67926 1.27320 1.35313 1.42866 1.51999 1.58257 1.66800 2.06946 2.15728 2.37713 2.67637 3.07614 3.40282 3.66525 3.73666 3.80312 3.88268 3.90888 4.05692 4.12845 4.26445 4.35362 4.40613 4.52802 4.60390 4.68485 4.69367 4.76536 4.82335 4.86935 4.92310 4.94630 4.95444 5.14954 5.30238 5.39245 5.43557 5.56827 5.61557 5.66768 5.70817 5.80106 5.97043 6.58025 6.80065 6.95033 7.31170 7.55104 7.60982 7.77728 8.77145 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.002798 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.959548 B =10004.885654 C =11226.557796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.117 3.883 3 C -0.133 4.133 4 C -0.176 4.176 5 O -0.386 6.386 6 C 0.645 3.355 7 O -0.600 6.600 8 N -0.671 5.671 9 C 0.264 3.736 10 H 0.075 0.925 11 C -0.541 4.541 12 H 0.074 0.926 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.952 3.048 16 H -0.259 1.259 17 H -0.292 1.292 18 H -0.280 1.280 19 C 0.544 3.456 20 O -0.585 6.585 21 N -0.712 5.712 22 C 0.124 3.876 23 C 0.113 3.887 24 N -0.288 5.288 25 C -0.026 4.026 26 C -0.068 4.068 27 N -0.316 5.316 28 N -0.137 5.137 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.398 0.602 39 H 0.264 0.736 40 H 0.417 0.583 41 H 0.060 0.940 42 H 0.039 0.961 43 H 0.117 0.883 44 H 0.164 0.836 45 H 0.243 0.757 46 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.216 -3.011 -0.515 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.081 3.919 3 C -0.190 4.190 4 C -0.233 4.233 5 O -0.301 6.301 6 C 0.398 3.602 7 O -0.493 6.493 8 N -0.327 5.327 9 C 0.160 3.840 10 H 0.092 0.908 11 C -0.580 4.580 12 H 0.092 0.908 13 C -0.164 4.164 14 N -0.517 5.517 15 Si 0.779 3.221 16 H -0.182 1.182 17 H -0.218 1.218 18 H -0.206 1.206 19 C 0.332 3.668 20 O -0.464 6.464 21 N -0.366 5.366 22 C -0.001 4.001 23 C -0.008 4.008 24 N -0.082 5.082 25 C -0.177 4.177 26 C -0.226 4.226 27 N -0.181 5.181 28 N -0.116 5.116 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.232 0.768 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.135 0.865 44 H 0.182 0.818 45 H 0.260 0.740 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.694 -2.106 -0.152 10.901 hybrid contribution 0.389 -0.816 -0.387 0.983 sum -10.306 -2.921 -0.539 10.725 Atomic orbital electron populations 1.22425 0.93639 1.03654 1.03370 1.22418 0.95020 0.92694 0.81761 1.21862 1.01948 0.90822 1.04318 1.22432 1.00887 1.02372 0.97621 1.86314 1.72370 1.23978 1.47462 1.18096 0.79208 0.80275 0.82665 1.90747 1.43703 1.70952 1.43915 1.45119 1.52716 1.12534 1.22322 1.18332 0.97257 0.78841 0.89591 0.90770 1.21376 0.92275 1.24493 1.19852 0.90772 1.25711 0.99959 0.95922 0.94839 1.70062 1.15383 1.37476 1.28823 0.85584 0.78857 0.78786 0.78922 1.18239 1.21843 1.20588 1.21005 0.73160 0.81656 0.91022 1.90532 1.48888 1.51064 1.55945 1.45199 1.71224 1.12912 1.07302 1.21116 1.01072 0.94693 0.83227 1.22400 1.08580 0.95199 0.74624 1.47553 1.09084 1.40104 1.11497 1.24566 0.97422 1.03417 0.92330 1.24347 0.92305 1.06361 0.99582 1.75078 1.16292 1.14459 1.12263 1.78406 1.14329 1.22005 0.96844 0.92294 0.88571 0.92091 0.92060 0.87296 0.91403 0.92233 0.88482 0.93248 0.76765 0.92721 0.74617 0.92195 0.94210 0.86531 0.81813 0.74037 0.76198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.97 8.37 71.98 0.60 -4.36 16 2 C 0.12 3.70 1.13 -10.79 -0.01 3.69 16 3 C -0.13 -3.06 8.85 71.98 0.64 -2.42 16 4 C -0.18 -5.49 8.37 71.98 0.60 -4.89 16 5 O -0.39 -16.04 9.94 -55.50 -0.55 -16.59 16 6 C 0.64 30.06 8.01 129.79 1.04 31.10 16 7 O -0.60 -28.60 11.54 19.82 0.23 -28.37 16 8 N -0.67 -32.87 4.36 -577.35 -2.52 -35.39 16 9 C 0.26 12.33 2.57 43.50 0.11 12.44 16 10 H 0.07 3.33 7.58 -2.39 -0.02 3.31 16 11 C -0.54 -26.31 8.66 25.60 0.22 -26.09 16 12 H 0.07 3.54 7.81 -2.91 -0.02 3.51 16 13 C 0.04 2.06 5.23 84.65 0.44 2.51 16 14 N -0.88 -47.61 11.58 21.45 0.25 -47.36 16 15 Si 0.95 40.83 29.54 68.60 2.03 42.85 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 17 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 19 C 0.54 24.28 6.00 87.66 0.53 24.81 16 20 O -0.58 -30.42 15.79 -3.03 -0.05 -30.47 16 21 N -0.71 -23.77 5.46 -463.06 -2.53 -26.30 16 22 C 0.12 3.70 5.80 86.38 0.50 4.20 16 23 C 0.11 2.04 6.57 86.38 0.57 2.61 16 24 N -0.29 -6.47 3.44 -347.74 -1.20 -7.67 16 25 C -0.03 -0.39 11.57 83.49 0.97 0.58 16 26 C -0.07 -1.32 12.05 83.73 1.01 -0.31 16 27 N -0.32 -9.61 12.41 -58.26 -0.72 -10.34 16 28 N -0.14 -4.39 12.91 37.02 0.48 -3.91 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.13 5.88 -2.39 -0.01 2.11 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.06 2.27 5.88 -2.39 -0.01 2.26 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.40 20.82 7.58 -92.71 -0.70 20.12 16 39 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.42 11.17 8.36 -92.71 -0.78 10.39 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 43 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.16 1.30 8.07 -2.39 -0.02 1.28 16 45 H 0.24 0.79 8.06 -2.91 -0.02 0.76 16 46 H 0.22 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -78.34 388.45 2.18 -76.16 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -0.46 Total: 43.50 kcal Atomic # 6 Polarization: 36.65 SS G_CDS: 7.22 Total: 43.86 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -6.24 Total: -130.96 kcal Atomic # 8 Polarization: -75.05 SS G_CDS: -0.37 Total: -75.43 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -78.34 2.18 -76.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180779557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.973 kcal (2) G-P(sol) polarization free energy of solvation -78.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds