Wall clock time and date at job start Tue Mar 31 2020 22:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34379 * 126.76859 * 2 1 4 4 N 1.30857 * 108.20091 * 179.97438 * 3 2 1 5 5 C 1.33632 * 109.78295 * 359.97438 * 4 3 2 6 6 N 1.39865 * 125.60338 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00006 * 0.02732 * 6 5 4 8 8 O 1.21288 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47119 * 179.97438 * 9 7 6 11 11 C 1.46504 * 119.99903 * 90.00058 * 10 9 7 12 12 C 1.50700 * 109.47182 * 90.00150 * 11 10 9 13 13 H 1.07995 * 119.99870 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00475 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99629 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46936 * 60.00326 * 16 14 12 18 18 H 1.48496 * 109.46767 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47024 * 300.00487 * 16 14 12 20 20 C 1.34777 * 120.00278 * 270.00030 * 10 9 7 21 21 O 1.21516 * 119.99743 * 0.02562 * 20 10 9 22 22 O 1.34640 * 120.00407 * 179.97438 * 20 10 9 23 23 C 1.45200 * 117.00240 * 179.97438 * 22 20 10 24 24 C 1.52999 * 109.46856 * 59.99733 * 23 22 20 25 25 C 1.52994 * 109.46894 * 179.97438 * 23 22 20 26 26 C 1.52990 * 109.47007 * 300.00014 * 23 22 20 27 27 N 1.31168 * 108.78887 * 0.26253 * 5 4 3 28 28 H 1.09002 * 109.47496 * 90.00085 * 1 2 3 29 29 H 1.09003 * 109.47573 * 210.00250 * 1 2 3 30 30 H 1.09005 * 109.47110 * 330.00339 * 1 2 3 31 31 H 1.08001 * 125.90218 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99319 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47427 * 299.99739 * 9 7 6 34 34 H 1.09004 * 109.47142 * 59.99509 * 9 7 6 35 35 H 1.09007 * 109.47020 * 209.99985 * 11 10 9 36 36 H 1.08995 * 109.47250 * 329.99819 * 11 10 9 37 37 H 0.96993 * 120.00172 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47043 * 60.00350 * 24 23 22 39 39 H 1.09003 * 109.47201 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.47564 * 300.00188 * 24 23 22 41 41 H 1.09001 * 109.47374 * 60.00260 * 25 23 22 42 42 H 1.09005 * 109.47002 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.47618 * 299.99529 * 25 23 22 44 44 H 1.09002 * 109.47591 * 59.99653 * 26 23 22 45 45 H 1.09000 * 109.47428 * 179.97438 * 26 23 22 46 46 H 1.09001 * 109.47298 * 300.00050 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2693 1.0765 0.0000 4 7 3.5098 0.6598 0.0006 5 6 3.5381 -0.6762 0.0015 6 7 4.6923 -1.4662 0.0018 7 6 5.9077 -0.8836 0.0016 8 8 6.0004 0.3257 0.0008 9 6 7.1512 -1.7348 0.0014 10 7 8.3343 -0.8709 0.0006 11 6 8.9264 -0.4385 1.2691 12 6 9.9673 -1.4377 1.7039 13 1 10.1675 -2.3079 1.0965 14 6 10.6641 -1.2408 2.8773 15 7 10.4207 -0.1809 3.6167 16 14 11.9539 -2.4798 3.4167 17 1 13.0142 -2.5731 2.3812 18 1 12.5550 -2.0408 4.7017 19 1 11.3183 -3.8099 3.5956 20 6 8.8781 -0.4737 -1.1669 21 8 8.3867 -0.8319 -2.2189 22 8 9.9651 0.3207 -1.1675 23 6 10.4974 0.7086 -2.4616 24 6 9.4283 1.4740 -3.2440 25 6 11.7215 1.6043 -2.2618 26 6 10.9025 -0.5431 -3.2424 27 7 2.3056 -1.1250 -0.0042 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9476 2.1074 -0.0004 32 1 4.6180 -2.4333 0.0021 33 1 7.1610 -2.3641 0.8912 34 1 7.1606 -2.3640 -0.8887 35 1 9.3925 0.5381 1.1383 36 1 8.1480 -0.3707 2.0290 37 1 10.9106 -0.0426 4.4423 38 1 9.1396 2.3658 -2.6877 39 1 9.8279 1.7656 -4.2153 40 1 8.5558 0.8363 -3.3863 41 1 12.4833 1.0594 -1.7042 42 1 12.1214 1.8951 -3.2333 43 1 11.4325 2.4961 -1.7057 44 1 10.0301 -1.1809 -3.3847 45 1 11.3016 -0.2520 -4.2140 46 1 11.6641 -1.0884 -2.6849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184845777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:39 Heat of formation + Delta-G solvation = 0.667149 kcal Electronic energy + Delta-G solvation = -30418.730310 eV Core-core repulsion = 26154.142206 eV Total energy + Delta-G solvation = -4264.588105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11371 -40.18477 -39.22691 -36.80152 -35.12157 -34.72004 -33.38122 -33.26635 -32.48893 -31.03901 -28.66663 -27.14841 -26.98466 -26.97767 -26.42069 -23.04808 -22.79879 -22.17371 -20.98047 -19.94005 -18.66742 -17.76205 -17.15930 -17.00803 -16.24493 -16.22232 -16.16592 -15.87244 -15.17950 -14.83378 -14.71338 -14.52920 -14.37176 -13.91710 -13.66491 -13.45934 -13.35800 -13.29650 -12.80896 -12.36058 -12.10331 -11.85361 -11.82080 -11.70788 -11.47597 -11.44095 -11.27510 -11.05682 -10.94260 -10.81496 -10.72705 -10.63910 -10.19876 -10.08006 -9.85215 -9.82714 -9.73204 -9.44400 -9.33090 -8.62792 -8.46074 -7.84743 -6.06980 -4.13750 1.50795 1.97777 2.63707 2.78479 3.12076 3.30281 3.35223 3.37647 3.40198 3.68364 4.25827 4.37679 4.42914 4.70850 4.82598 4.89309 5.06911 5.16223 5.19205 5.21955 5.26597 5.33589 5.53608 5.53973 5.74387 5.80863 5.87076 6.04759 6.06480 6.16140 6.21224 6.25136 6.35416 6.55054 6.57398 6.68528 6.77004 6.81807 7.16653 7.21015 7.40232 7.56496 7.86016 8.16191 8.18935 8.27943 8.43697 8.87925 9.18525 9.52173 11.00578 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.003558 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.836545 B = 7868.058791 C = 9911.490126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.387 5.387 3 C 0.267 3.733 4 N -0.518 5.518 5 C 0.459 3.541 6 N -0.634 5.634 7 C 0.494 3.506 8 O -0.459 6.459 9 C 0.128 3.872 10 N -0.565 5.565 11 C 0.248 3.752 12 C -0.535 4.535 13 H 0.060 0.940 14 C 0.065 3.935 15 N -0.890 5.890 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.665 3.335 21 O -0.600 6.600 22 O -0.338 6.338 23 C 0.132 3.868 24 C -0.180 4.180 25 C -0.139 4.139 26 C -0.180 4.180 27 N -0.351 5.351 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.221 0.779 32 H 0.421 0.579 33 H 0.121 0.879 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.383 0.455 -9.207 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.180 5.180 3 C -0.031 4.031 4 N -0.248 5.248 5 C 0.089 3.911 6 N -0.290 5.290 7 C 0.278 3.722 8 O -0.325 6.325 9 C 0.000 4.000 10 N -0.301 5.301 11 C 0.129 3.871 12 C -0.574 4.574 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C 0.421 3.579 21 O -0.493 6.493 22 O -0.251 6.251 23 C 0.095 3.905 24 C -0.237 4.237 25 C -0.196 4.196 26 C -0.237 4.237 27 N -0.188 5.188 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.237 0.763 32 H 0.259 0.741 33 H 0.139 0.861 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.156 0.890 -9.358 16.993 hybrid contribution 0.307 -0.860 0.431 1.009 sum -13.848 0.030 -8.928 16.477 Atomic orbital electron populations 1.21886 0.73788 1.04785 1.03587 1.50110 1.07626 1.03790 1.56504 1.26166 0.85071 0.95671 0.96176 1.70675 1.19661 1.09214 1.25206 1.20460 0.86478 0.87719 0.96408 1.42920 1.01630 1.09646 1.74799 1.22040 0.83842 0.90447 0.75912 1.90823 1.85205 1.13966 1.42470 1.21005 0.81288 0.91716 1.05960 1.46631 1.26633 1.50253 1.06600 1.19438 0.93304 0.96421 0.77897 1.21427 1.20871 1.08402 1.06718 0.92168 1.24919 0.97017 0.95597 0.96247 1.69933 1.41612 1.26989 1.14285 0.86571 0.81740 0.81325 0.77848 1.20164 1.21227 1.20183 1.17835 0.78942 0.77344 0.83825 1.90774 1.65681 1.62099 1.30773 1.86489 1.42289 1.62611 1.33743 1.21918 0.93334 0.94575 0.80678 1.22487 1.00626 1.01040 0.99537 1.21806 0.96096 0.99524 1.02163 1.22479 1.03405 0.98260 0.99540 1.78133 0.99498 1.06910 1.34226 0.90481 0.89177 0.88954 0.76252 0.74140 0.86094 0.87077 0.93516 0.94656 0.92558 0.92363 0.92003 0.89490 0.91352 0.90934 0.91566 0.89502 0.92014 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.52 59.84 0.69 1.21 16 2 N -0.39 -4.21 4.03 -69.45 -0.28 -4.49 16 3 C 0.27 3.12 12.65 -90.68 -1.15 1.97 16 4 N -0.52 -8.95 9.37 -14.92 -0.14 -9.09 16 5 C 0.46 7.60 8.81 -320.85 -2.83 4.78 16 6 N -0.63 -9.73 5.44 -12.82 -0.07 -9.80 16 7 C 0.49 9.26 7.86 -10.99 -0.09 9.17 16 8 O -0.46 -10.67 15.11 5.55 0.08 -10.59 16 9 C 0.13 2.29 5.89 -5.20 -0.03 2.25 16 10 N -0.57 -12.72 1.94 -182.25 -0.35 -13.07 16 11 C 0.25 6.43 5.17 -5.19 -0.03 6.40 16 12 C -0.54 -14.47 9.39 -34.44 -0.32 -14.80 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 16 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.66 15.14 7.70 54.06 0.42 15.56 16 21 O -0.60 -13.37 11.46 -19.28 -0.22 -13.59 16 22 O -0.34 -7.58 8.71 -40.32 -0.35 -7.93 16 23 C 0.13 2.35 1.13 -90.63 -0.10 2.25 16 24 C -0.18 -2.99 8.37 37.16 0.31 -2.68 16 25 C -0.14 -2.06 8.85 37.15 0.33 -1.73 16 26 C -0.18 -2.92 8.37 37.15 0.31 -2.61 16 27 N -0.35 -5.06 12.72 30.04 0.38 -4.67 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.22 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.42 4.74 8.82 -40.82 -0.36 4.38 16 33 H 0.12 1.89 8.07 -51.93 -0.42 1.47 16 34 H 0.11 1.75 7.42 -51.93 -0.39 1.36 16 35 H 0.05 1.34 7.37 -51.92 -0.38 0.95 16 36 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.66 5.88 -51.93 -0.31 1.35 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.09 1.58 5.88 -51.93 -0.31 1.27 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -38.77 391.22 -8.70 -47.46 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.77 Total: 5.37 kcal Atomic # 6 Polarization: 26.04 SS G_CDS: -2.58 Total: 23.46 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: 0.27 Total: -66.09 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.49 Total: -32.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.77 -8.70 -47.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.130 kcal (2) G-P(sol) polarization free energy of solvation -38.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds