Wall clock time and date at job start Tue Mar 31 2020 22:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34379 * 126.76859 * 2 1 4 4 N 1.30857 * 108.20091 * 179.97438 * 3 2 1 5 5 C 1.33632 * 109.78295 * 359.97438 * 4 3 2 6 6 N 1.39865 * 125.60338 * 179.97438 * 5 4 3 7 7 C 1.34777 * 120.00006 * 0.02732 * 6 5 4 8 8 O 1.21288 * 119.99963 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99735 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47119 * 179.97438 * 9 7 6 11 11 C 1.46504 * 119.99903 * 90.00058 * 10 9 7 12 12 C 1.50700 * 109.47182 * 90.00150 * 11 10 9 13 13 H 1.07995 * 119.99870 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00475 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99629 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46936 * 60.00326 * 16 14 12 18 18 H 1.48496 * 109.46767 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47024 * 300.00487 * 16 14 12 20 20 C 1.34777 * 120.00278 * 270.00030 * 10 9 7 21 21 O 1.21516 * 119.99743 * 0.02562 * 20 10 9 22 22 O 1.34640 * 120.00407 * 179.97438 * 20 10 9 23 23 C 1.45200 * 117.00240 * 179.97438 * 22 20 10 24 24 C 1.52999 * 109.46856 * 59.99733 * 23 22 20 25 25 C 1.52994 * 109.46894 * 179.97438 * 23 22 20 26 26 C 1.52990 * 109.47007 * 300.00014 * 23 22 20 27 27 N 1.31168 * 108.78887 * 0.26253 * 5 4 3 28 28 H 1.09002 * 109.47496 * 90.00085 * 1 2 3 29 29 H 1.09003 * 109.47573 * 210.00250 * 1 2 3 30 30 H 1.09005 * 109.47110 * 330.00339 * 1 2 3 31 31 H 1.08001 * 125.90218 * 359.97438 * 3 2 1 32 32 H 0.97000 * 119.99319 * 180.02562 * 6 5 4 33 33 H 1.08993 * 109.47427 * 299.99739 * 9 7 6 34 34 H 1.09004 * 109.47142 * 59.99509 * 9 7 6 35 35 H 1.09007 * 109.47020 * 209.99985 * 11 10 9 36 36 H 1.08995 * 109.47250 * 329.99819 * 11 10 9 37 37 H 0.96993 * 120.00172 * 179.97438 * 15 14 12 38 38 H 1.09006 * 109.47043 * 60.00350 * 24 23 22 39 39 H 1.09003 * 109.47201 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.47564 * 300.00188 * 24 23 22 41 41 H 1.09001 * 109.47374 * 60.00260 * 25 23 22 42 42 H 1.09005 * 109.47002 * 179.97438 * 25 23 22 43 43 H 1.09001 * 109.47618 * 299.99529 * 25 23 22 44 44 H 1.09002 * 109.47591 * 59.99653 * 26 23 22 45 45 H 1.09000 * 109.47428 * 179.97438 * 26 23 22 46 46 H 1.09001 * 109.47298 * 300.00050 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2693 1.0765 0.0000 4 7 3.5098 0.6598 0.0006 5 6 3.5381 -0.6762 0.0015 6 7 4.6923 -1.4662 0.0018 7 6 5.9077 -0.8836 0.0016 8 8 6.0004 0.3257 0.0008 9 6 7.1512 -1.7348 0.0014 10 7 8.3343 -0.8709 0.0006 11 6 8.9264 -0.4385 1.2691 12 6 9.9673 -1.4377 1.7039 13 1 10.1675 -2.3079 1.0965 14 6 10.6641 -1.2408 2.8773 15 7 10.4207 -0.1809 3.6167 16 14 11.9539 -2.4798 3.4167 17 1 13.0142 -2.5731 2.3812 18 1 12.5550 -2.0408 4.7017 19 1 11.3183 -3.8099 3.5956 20 6 8.8781 -0.4737 -1.1669 21 8 8.3867 -0.8319 -2.2189 22 8 9.9651 0.3207 -1.1675 23 6 10.4974 0.7086 -2.4616 24 6 9.4283 1.4740 -3.2440 25 6 11.7215 1.6043 -2.2618 26 6 10.9025 -0.5431 -3.2424 27 7 2.3056 -1.1250 -0.0042 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9476 2.1074 -0.0004 32 1 4.6180 -2.4333 0.0021 33 1 7.1610 -2.3641 0.8912 34 1 7.1606 -2.3640 -0.8887 35 1 9.3925 0.5381 1.1383 36 1 8.1480 -0.3707 2.0290 37 1 10.9106 -0.0426 4.4423 38 1 9.1396 2.3658 -2.6877 39 1 9.8279 1.7656 -4.2153 40 1 8.5558 0.8363 -3.3863 41 1 12.4833 1.0594 -1.7042 42 1 12.1214 1.8951 -3.2333 43 1 11.4325 2.4961 -1.7057 44 1 10.0301 -1.1809 -3.3847 45 1 11.3016 -0.2520 -4.2140 46 1 11.6641 -1.0884 -2.6849 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184845777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:38 Heat of formation + Delta-G solvation = -23.719172 kcal Electronic energy + Delta-G solvation = -30419.787781 eV Core-core repulsion = 26154.142206 eV Total energy + Delta-G solvation = -4265.645575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.14373 -41.81290 -40.68282 -38.37260 -36.68950 -36.20479 -34.82562 -34.55032 -34.26662 -32.12417 -30.29441 -28.65246 -28.29901 -28.23804 -27.54866 -25.03478 -24.12804 -23.20703 -22.36470 -21.23400 -20.25419 -19.00014 -18.91218 -18.47437 -18.00689 -17.70790 -17.22601 -16.98859 -16.82169 -16.47810 -16.13477 -15.97317 -15.59858 -15.28596 -15.10492 -14.86582 -14.35161 -14.32372 -14.15412 -13.93836 -13.49844 -13.32690 -13.17511 -13.03717 -12.88338 -12.78448 -12.71365 -12.70004 -12.51794 -12.46390 -12.25052 -11.99971 -11.96580 -11.83383 -11.45364 -11.25535 -10.98823 -10.88993 -10.80038 -10.57758 -9.72934 -9.65278 -8.17148 -6.32922 0.48630 0.96913 1.36538 1.41308 1.45495 1.47570 1.55634 1.82479 2.12412 2.17401 2.43247 3.06844 3.13795 3.30169 3.65724 3.83747 3.87700 3.89327 4.02571 4.14053 4.33632 4.38448 4.49055 4.55231 4.59704 4.65971 4.72936 4.74823 4.77890 4.79898 4.87527 4.91576 5.13047 5.21976 5.22392 5.34870 5.40372 5.49703 5.56967 5.60325 5.74819 5.87098 6.04980 6.12005 6.45100 6.77307 6.95744 7.25321 7.34355 7.48681 8.90364 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.003558 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.836545 B = 7868.058791 C = 9911.490126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.378 5.378 3 C 0.274 3.726 4 N -0.581 5.581 5 C 0.430 3.570 6 N -0.619 5.619 7 C 0.499 3.501 8 O -0.513 6.513 9 C 0.125 3.875 10 N -0.573 5.573 11 C 0.272 3.728 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.926 5.926 16 Si 0.967 3.033 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.262 1.262 20 C 0.659 3.341 21 O -0.600 6.600 22 O -0.366 6.366 23 C 0.113 3.887 24 C -0.171 4.171 25 C -0.134 4.134 26 C -0.171 4.171 27 N -0.359 5.359 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.130 0.870 31 H 0.269 0.731 32 H 0.438 0.562 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.009 0.991 36 H 0.015 0.985 37 H 0.267 0.733 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.991 -0.296 -10.208 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.170 5.170 3 C -0.022 4.022 4 N -0.313 5.313 5 C 0.061 3.939 6 N -0.276 5.276 7 C 0.283 3.717 8 O -0.382 6.382 9 C -0.001 4.001 10 N -0.309 5.309 11 C 0.151 3.849 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.185 4.185 15 N -0.565 5.565 16 Si 0.792 3.208 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.187 1.187 20 C 0.415 3.585 21 O -0.493 6.493 22 O -0.281 6.281 23 C 0.077 3.923 24 C -0.228 4.228 25 C -0.191 4.191 26 C -0.229 4.229 27 N -0.197 5.197 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.284 0.716 32 H 0.279 0.721 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.857 0.083 -10.387 18.128 hybrid contribution 0.291 -0.556 0.674 0.921 sum -14.565 -0.473 -9.714 17.514 Atomic orbital electron populations 1.22407 0.70245 1.06844 1.05402 1.50489 1.09313 1.02626 1.54570 1.26953 0.83767 0.97422 0.94063 1.70586 1.23075 1.10034 1.27580 1.20645 0.86993 0.87991 0.98274 1.42575 1.00886 1.10481 1.73695 1.22054 0.84871 0.89729 0.75025 1.90795 1.86099 1.16021 1.45321 1.21308 0.79501 0.91215 1.08094 1.46612 1.27904 1.50944 1.05465 1.18876 0.92419 0.94750 0.78842 1.21633 1.21128 1.08459 1.06921 0.91870 1.25805 0.99059 0.97422 0.96192 1.70070 1.42821 1.28884 1.14758 0.85472 0.78847 0.79204 0.77313 1.19778 1.20888 1.18654 1.17974 0.79202 0.77498 0.83862 1.90760 1.65827 1.62280 1.30478 1.86481 1.42195 1.62490 1.36897 1.22485 0.94476 0.95934 0.79421 1.22404 0.99476 0.99782 1.01184 1.21853 0.94540 0.98376 1.04281 1.22403 1.02297 0.97105 1.01049 1.78016 0.99019 1.08908 1.33714 0.88717 0.88856 0.85218 0.71587 0.72133 0.83938 0.84725 0.97291 0.96712 0.92404 0.93372 0.88162 0.92241 0.92087 0.86878 0.92331 0.91714 0.88326 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.52 127.77 1.47 2.11 16 2 N -0.38 -7.55 4.03 -373.64 -1.51 -9.05 16 3 C 0.27 6.06 12.65 180.37 2.28 8.35 16 4 N -0.58 -20.46 9.37 -201.13 -1.89 -22.34 16 5 C 0.43 14.51 8.81 260.80 2.30 16.80 16 6 N -0.62 -19.50 5.44 -312.87 -1.70 -21.21 16 7 C 0.50 19.45 7.86 87.66 0.69 20.14 16 8 O -0.51 -25.18 15.11 -3.05 -0.05 -25.23 16 9 C 0.13 4.56 5.89 85.63 0.50 5.06 16 10 N -0.57 -26.81 1.94 -960.91 -1.87 -28.68 16 11 C 0.27 14.77 5.17 85.63 0.44 15.21 16 12 C -0.54 -29.93 9.39 25.60 0.24 -29.69 16 13 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 14 C 0.01 0.83 5.46 84.65 0.46 1.29 16 15 N -0.93 -54.76 13.29 21.45 0.28 -54.48 16 16 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 20 C 0.66 31.07 7.70 129.79 1.00 32.07 16 21 O -0.60 -27.38 11.46 19.79 0.23 -27.15 16 22 O -0.37 -17.05 8.71 -55.49 -0.48 -17.53 16 23 C 0.11 3.99 1.13 -10.80 -0.01 3.98 16 24 C -0.17 -5.65 8.37 71.98 0.60 -5.05 16 25 C -0.13 -3.81 8.85 71.98 0.64 -3.18 16 26 C -0.17 -5.39 8.37 71.98 0.60 -4.79 16 27 N -0.36 -10.15 12.72 -58.89 -0.75 -10.90 16 28 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.13 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.27 2.67 8.06 -2.91 -0.02 2.65 16 32 H 0.44 9.91 8.82 -92.71 -0.82 9.10 16 33 H 0.14 4.48 8.07 -2.39 -0.02 4.46 16 34 H 0.14 4.23 7.42 -2.39 -0.02 4.21 16 35 H 0.01 0.55 7.37 -2.38 -0.02 0.53 16 36 H 0.01 0.85 8.07 -2.39 -0.02 0.83 16 37 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.06 2.30 5.88 -2.39 -0.01 2.28 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 2.27 8.14 -2.38 -0.02 2.26 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 2.33 5.88 -2.39 -0.01 2.32 16 45 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -89.33 391.22 5.71 -83.63 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.19 Total: 25.55 kcal Atomic # 6 Polarization: 51.09 SS G_CDS: 11.22 Total: 62.31 kcal Atomic # 7 Polarization: -139.23 SS G_CDS: -7.43 Total: -146.65 kcal Atomic # 8 Polarization: -69.61 SS G_CDS: -0.30 Total: -69.91 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -89.33 5.71 -83.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.907 kcal (2) G-P(sol) polarization free energy of solvation -89.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds