Wall clock time and date at job start Tue Mar 31 2020 22:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28696 * 125.67614 * 2 1 4 4 C 1.30915 * 109.71527 * 179.97438 * 3 2 1 5 5 C 1.39884 * 108.24954 * 0.02562 * 4 3 2 6 6 N 1.40230 * 126.70824 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99830 * 359.72107 * 6 5 4 8 8 O 1.21293 * 120.00229 * 0.28054 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27616 * 7 6 5 10 10 N 1.46492 * 109.47441 * 180.02562 * 9 7 6 11 11 C 1.46502 * 120.00159 * 90.00228 * 10 9 7 12 12 C 1.50693 * 109.47458 * 90.00035 * 11 10 9 13 13 H 1.08002 * 119.99645 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00272 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00082 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46803 * 89.99563 * 16 14 12 18 18 H 1.48499 * 109.46853 * 209.99767 * 16 14 12 19 19 H 1.48500 * 109.47067 * 329.99868 * 16 14 12 20 20 C 1.34780 * 120.00019 * 269.99863 * 10 9 7 21 21 O 1.21507 * 120.00039 * 179.97438 * 20 10 9 22 22 O 1.34638 * 120.00015 * 0.02562 * 20 10 9 23 23 C 1.45197 * 116.99922 * 179.97438 * 22 20 10 24 24 C 1.52997 * 109.46923 * 60.00339 * 23 22 20 25 25 C 1.53000 * 109.46917 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47303 * 299.99886 * 23 22 20 27 27 N 1.31843 * 106.58508 * 0.23809 * 5 4 3 28 28 H 1.09007 * 109.46908 * 90.02779 * 1 2 3 29 29 H 1.09005 * 109.46774 * 210.02043 * 1 2 3 30 30 H 1.08996 * 109.47014 * 330.02561 * 1 2 3 31 31 H 1.07998 * 125.87465 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00382 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 34 34 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 35 35 H 1.09003 * 109.46939 * 210.00135 * 11 10 9 36 36 H 1.08997 * 109.46870 * 329.99438 * 11 10 9 37 37 H 0.96990 * 120.00388 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47317 * 59.99968 * 24 23 22 39 39 H 1.09005 * 109.46829 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.46974 * 299.99253 * 24 23 22 41 41 H 1.09006 * 109.47431 * 60.00213 * 25 23 22 42 42 H 1.09005 * 109.47201 * 180.02562 * 25 23 22 43 43 H 1.09006 * 109.47348 * 300.00069 * 25 23 22 44 44 H 1.09000 * 109.46709 * 59.99943 * 26 23 22 45 45 H 1.09005 * 109.47112 * 180.02562 * 26 23 22 46 46 H 1.08996 * 109.47332 * 299.99911 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2156 1.0454 0.0000 4 6 3.4743 0.6854 0.0006 5 6 3.5301 -0.7123 0.0003 6 7 4.6869 -1.5049 0.0003 7 6 5.9026 -0.9230 -0.0053 8 8 5.9961 0.2863 -0.0051 9 6 7.1458 -1.7747 -0.0116 10 7 8.3293 -0.9114 -0.0163 11 6 8.9269 -0.4808 1.2501 12 6 9.9691 -1.4809 1.6795 13 1 10.1663 -2.3506 1.0703 14 6 10.6701 -1.2863 2.8507 15 7 10.4296 -0.2275 3.5929 16 14 11.9615 -2.5264 3.3834 17 1 13.2805 -2.1401 2.8209 18 1 12.0433 -2.5501 4.8659 19 1 11.5875 -3.8750 2.8866 20 6 8.8684 -0.5133 -1.1856 21 8 9.8498 0.2032 -1.1895 22 8 8.3190 -0.9086 -2.3495 23 6 8.9520 -0.4411 -3.5697 24 6 10.4011 -0.9302 -3.6121 25 6 8.1929 -0.9884 -4.7801 26 6 8.9287 1.0884 -3.6027 27 7 2.2826 -1.1388 -0.0056 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3234 1.3528 0.0011 32 1 4.6122 -2.4721 -0.0003 33 1 7.1593 -2.4045 0.8779 34 1 7.1508 -2.4036 -0.9020 35 1 9.3929 0.4958 1.1184 36 1 8.1516 -0.4134 2.0133 37 1 10.9230 -0.0904 4.4166 38 1 10.4177 -2.0198 -3.5886 39 1 10.8762 -0.5796 -4.5284 40 1 10.9417 -0.5399 -2.7499 41 1 7.1606 -0.6396 -4.7497 42 1 8.6684 -0.6378 -5.6962 43 1 8.2090 -2.0781 -4.7568 44 1 9.4693 1.4786 -2.7404 45 1 9.4036 1.4393 -4.5190 46 1 7.8964 1.4368 -3.5725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184848378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:27 Heat of formation + Delta-G solvation = 8.944165 kcal Electronic energy + Delta-G solvation = -30529.938336 eV Core-core repulsion = 26265.709150 eV Total energy + Delta-G solvation = -4264.229186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.35210 -40.34250 -39.54968 -36.95545 -35.32759 -34.71064 -33.59938 -32.89870 -32.50223 -31.66956 -28.69838 -27.24808 -27.22646 -27.10202 -26.41853 -23.44300 -22.80066 -21.98582 -20.93508 -20.44629 -18.81618 -17.67253 -17.33371 -17.09897 -16.50822 -16.39168 -16.23656 -16.16276 -15.36369 -15.22945 -14.75579 -14.43642 -14.21477 -14.05692 -13.81362 -13.61757 -13.30261 -13.08765 -12.92827 -12.41889 -12.35213 -12.00509 -11.91189 -11.71008 -11.63587 -11.61198 -11.32374 -11.27912 -11.15086 -10.93797 -10.91091 -10.89883 -10.63495 -10.21588 -10.07885 -9.93143 -9.71735 -9.64308 -9.27528 -8.54498 -8.46988 -7.90556 -6.07853 -4.13834 1.41994 1.82585 2.28300 2.74760 2.97281 2.99254 3.29742 3.36247 3.37846 3.66403 4.17858 4.35197 4.47812 4.63365 4.83906 4.96141 4.98890 5.03849 5.06976 5.11832 5.15067 5.26519 5.34180 5.58517 5.59447 5.70248 5.70918 5.78293 5.83828 5.86078 5.91542 6.11851 6.13924 6.49055 6.60128 6.61466 6.63666 6.72997 7.09791 7.21234 7.40186 7.46094 7.87562 7.99701 8.10416 8.15116 8.25431 8.86647 9.15029 9.51821 11.00101 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008675 B = 0.003843 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.890430 B = 7284.945253 C = 9737.117720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.233 5.233 3 N -0.235 5.235 4 C -0.038 4.038 5 C 0.278 3.722 6 N -0.633 5.633 7 C 0.505 3.495 8 O -0.495 6.495 9 C 0.109 3.891 10 N -0.561 5.561 11 C 0.264 3.736 12 C -0.533 4.533 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.652 3.348 21 O -0.555 6.555 22 O -0.376 6.376 23 C 0.137 3.863 24 C -0.183 4.183 25 C -0.138 4.138 26 C -0.182 4.182 27 N -0.318 5.318 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.213 0.787 32 H 0.419 0.581 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.264 0.736 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.443 -4.099 -12.191 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.134 5.134 3 N -0.075 5.075 4 C -0.226 4.226 5 C 0.018 3.982 6 N -0.285 5.285 7 C 0.290 3.710 8 O -0.365 6.365 9 C -0.020 4.020 10 N -0.299 5.299 11 C 0.147 3.853 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.199 1.199 20 C 0.406 3.594 21 O -0.443 6.443 22 O -0.292 6.292 23 C 0.100 3.900 24 C -0.240 4.240 25 C -0.195 4.195 26 C -0.239 4.239 27 N -0.159 5.159 28 H 0.098 0.902 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.230 0.770 32 H 0.256 0.744 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.300 -2.921 -12.074 20.494 hybrid contribution 1.438 -1.147 0.371 1.877 sum -14.861 -4.069 -11.703 19.349 Atomic orbital electron populations 1.21870 0.70479 1.05149 1.03998 1.50693 1.07466 0.98684 1.56591 1.73408 1.03365 1.16771 1.13913 1.25027 0.94163 0.93681 1.09723 1.20105 0.87109 0.91697 0.99242 1.42924 1.01821 1.10128 1.73622 1.22173 0.83984 0.90179 0.74647 1.90642 1.85719 1.14579 1.45536 1.21215 0.82270 0.92349 1.06172 1.46939 1.26849 1.50746 1.05400 1.19395 0.93140 0.96958 0.75798 1.21440 1.20804 1.08334 1.06646 0.92148 1.24920 0.97012 0.95692 0.96270 1.69938 1.41507 1.27098 1.14375 0.86487 0.81968 0.81320 0.77557 1.20543 1.21169 1.19859 1.17972 0.81612 0.79185 0.80586 1.90862 1.27097 1.40090 1.86215 1.86221 1.57376 1.71468 1.14129 1.21874 0.92700 0.94366 0.81035 1.22510 0.95728 1.01460 1.04304 1.21828 1.00645 1.01737 0.95293 1.22492 1.02783 0.94452 1.04165 1.78019 0.99597 1.09688 1.28629 0.90152 0.88518 0.88418 0.77032 0.74427 0.85934 0.87151 0.93188 0.94350 0.92585 0.92427 0.91813 0.88872 0.91868 0.90647 0.91762 0.89046 0.91820 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 0.85 11.72 59.85 0.70 1.55 16 2 N -0.23 -2.93 4.69 -16.63 -0.08 -3.01 16 3 N -0.23 -3.42 12.01 30.64 0.37 -3.06 16 4 C -0.04 -0.60 10.85 -17.33 -0.19 -0.78 16 5 C 0.28 4.05 8.19 -153.99 -1.26 2.79 16 6 N -0.63 -7.94 5.45 -11.11 -0.06 -8.01 16 7 C 0.50 7.81 7.87 -10.98 -0.09 7.73 16 8 O -0.49 -9.49 13.65 5.55 0.08 -9.42 16 9 C 0.11 1.66 5.89 -5.20 -0.03 1.63 16 10 N -0.56 -11.76 1.94 -182.25 -0.35 -12.12 16 11 C 0.26 6.73 5.16 -5.20 -0.03 6.70 16 12 C -0.53 -14.41 9.39 -34.45 -0.32 -14.73 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 16 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 C 0.65 13.91 7.70 54.06 0.42 14.33 16 21 O -0.55 -13.43 11.46 -19.28 -0.22 -13.65 16 22 O -0.38 -6.64 8.71 -40.32 -0.35 -7.00 16 23 C 0.14 2.05 1.13 -90.62 -0.10 1.95 16 24 C -0.18 -2.71 8.37 37.16 0.31 -2.40 16 25 C -0.14 -1.53 8.85 37.16 0.33 -1.20 16 26 C -0.18 -2.75 8.37 37.16 0.31 -2.44 16 27 N -0.32 -4.38 12.70 31.45 0.40 -3.98 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.21 3.53 5.98 -52.49 -0.31 3.21 16 32 H 0.42 3.74 8.82 -40.82 -0.36 3.38 16 33 H 0.12 1.67 8.07 -51.93 -0.42 1.25 16 34 H 0.11 1.37 7.38 -51.93 -0.38 0.98 16 35 H 0.05 1.46 7.42 -51.93 -0.39 1.07 16 36 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.72 5.88 -51.93 -0.31 1.41 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.69 5.88 -51.93 -0.31 1.39 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -35.72 388.75 -5.36 -41.08 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.66 Total: 5.52 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: -0.05 Total: 16.78 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 1.01 Total: -55.30 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.50 Total: -30.07 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.72 -5.36 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184848378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.026 kcal (2) G-P(sol) polarization free energy of solvation -35.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds