Wall clock time and date at job start Tue Mar 31 2020 22:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28696 * 125.67614 * 2 1 4 4 C 1.30915 * 109.71527 * 179.97438 * 3 2 1 5 5 C 1.39884 * 108.24954 * 0.02562 * 4 3 2 6 6 N 1.40230 * 126.70824 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99830 * 359.72107 * 6 5 4 8 8 O 1.21293 * 120.00229 * 0.28054 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27616 * 7 6 5 10 10 N 1.46492 * 109.47441 * 180.02562 * 9 7 6 11 11 C 1.46502 * 120.00159 * 90.00228 * 10 9 7 12 12 C 1.50693 * 109.47458 * 90.00035 * 11 10 9 13 13 H 1.08002 * 119.99645 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00272 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00082 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00180 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46803 * 89.99563 * 16 14 12 18 18 H 1.48499 * 109.46853 * 209.99767 * 16 14 12 19 19 H 1.48500 * 109.47067 * 329.99868 * 16 14 12 20 20 C 1.34780 * 120.00019 * 269.99863 * 10 9 7 21 21 O 1.21507 * 120.00039 * 179.97438 * 20 10 9 22 22 O 1.34638 * 120.00015 * 0.02562 * 20 10 9 23 23 C 1.45197 * 116.99922 * 179.97438 * 22 20 10 24 24 C 1.52997 * 109.46923 * 60.00339 * 23 22 20 25 25 C 1.53000 * 109.46917 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47303 * 299.99886 * 23 22 20 27 27 N 1.31843 * 106.58508 * 0.23809 * 5 4 3 28 28 H 1.09007 * 109.46908 * 90.02779 * 1 2 3 29 29 H 1.09005 * 109.46774 * 210.02043 * 1 2 3 30 30 H 1.08996 * 109.47014 * 330.02561 * 1 2 3 31 31 H 1.07998 * 125.87465 * 180.02562 * 4 3 2 32 32 H 0.97001 * 120.00382 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 34 34 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 35 35 H 1.09003 * 109.46939 * 210.00135 * 11 10 9 36 36 H 1.08997 * 109.46870 * 329.99438 * 11 10 9 37 37 H 0.96990 * 120.00388 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47317 * 59.99968 * 24 23 22 39 39 H 1.09005 * 109.46829 * 179.97438 * 24 23 22 40 40 H 1.08996 * 109.46974 * 299.99253 * 24 23 22 41 41 H 1.09006 * 109.47431 * 60.00213 * 25 23 22 42 42 H 1.09005 * 109.47201 * 180.02562 * 25 23 22 43 43 H 1.09006 * 109.47348 * 300.00069 * 25 23 22 44 44 H 1.09000 * 109.46709 * 59.99943 * 26 23 22 45 45 H 1.09005 * 109.47112 * 180.02562 * 26 23 22 46 46 H 1.08996 * 109.47332 * 299.99911 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2156 1.0454 0.0000 4 6 3.4743 0.6854 0.0006 5 6 3.5301 -0.7123 0.0003 6 7 4.6869 -1.5049 0.0003 7 6 5.9026 -0.9230 -0.0053 8 8 5.9961 0.2863 -0.0051 9 6 7.1458 -1.7747 -0.0116 10 7 8.3293 -0.9114 -0.0163 11 6 8.9269 -0.4808 1.2501 12 6 9.9691 -1.4809 1.6795 13 1 10.1663 -2.3506 1.0703 14 6 10.6701 -1.2863 2.8507 15 7 10.4296 -0.2275 3.5929 16 14 11.9615 -2.5264 3.3834 17 1 13.2805 -2.1401 2.8209 18 1 12.0433 -2.5501 4.8659 19 1 11.5875 -3.8750 2.8866 20 6 8.8684 -0.5133 -1.1856 21 8 9.8498 0.2032 -1.1895 22 8 8.3190 -0.9086 -2.3495 23 6 8.9520 -0.4411 -3.5697 24 6 10.4011 -0.9302 -3.6121 25 6 8.1929 -0.9884 -4.7801 26 6 8.9287 1.0884 -3.6027 27 7 2.2826 -1.1388 -0.0056 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8899 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3234 1.3528 0.0011 32 1 4.6122 -2.4721 -0.0003 33 1 7.1593 -2.4045 0.8779 34 1 7.1508 -2.4036 -0.9020 35 1 9.3929 0.4958 1.1184 36 1 8.1516 -0.4134 2.0133 37 1 10.9230 -0.0904 4.4166 38 1 10.4177 -2.0198 -3.5886 39 1 10.8762 -0.5796 -4.5284 40 1 10.9417 -0.5399 -2.7499 41 1 7.1606 -0.6396 -4.7497 42 1 8.6684 -0.6378 -5.6962 43 1 8.2090 -2.0781 -4.7568 44 1 9.4693 1.4786 -2.7404 45 1 9.4036 1.4393 -4.5190 46 1 7.8964 1.4368 -3.5725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184848378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:26 Heat of formation + Delta-G solvation = -16.495844 kcal Electronic energy + Delta-G solvation = -30531.041498 eV Core-core repulsion = 26265.709150 eV Total energy + Delta-G solvation = -4265.332348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43706 -41.82300 -40.84831 -38.43671 -36.66090 -36.25141 -35.08646 -34.40965 -33.76573 -32.79035 -30.29147 -28.72633 -28.31051 -28.22223 -27.58623 -25.36567 -24.01618 -23.03236 -22.39152 -21.65689 -20.26018 -19.00581 -18.87557 -18.39876 -18.01736 -17.73650 -17.41872 -17.40838 -16.84853 -16.67752 -16.32622 -15.66515 -15.54147 -15.41663 -15.20992 -14.94418 -14.36675 -14.32242 -14.05887 -13.61849 -13.48460 -13.29946 -13.17529 -13.05276 -12.89723 -12.84101 -12.78134 -12.73877 -12.53710 -12.44523 -12.43726 -12.22016 -12.08478 -12.00936 -11.78143 -11.30275 -11.26881 -10.89286 -10.80286 -10.61043 -9.65235 -9.59934 -8.18703 -6.33596 0.32315 0.85450 1.07848 1.32297 1.43318 1.46124 1.55969 1.79925 1.81062 2.11663 2.43161 3.01155 3.13582 3.25544 3.46115 3.84139 3.87118 3.97385 4.01814 4.15197 4.37736 4.38697 4.39075 4.51961 4.53752 4.65572 4.69172 4.71292 4.73916 4.80606 4.87402 4.93648 5.01465 5.14880 5.24086 5.34604 5.35761 5.40516 5.51804 5.59687 5.65882 5.78255 6.04809 6.18953 6.56483 6.75478 6.86106 7.01276 7.33152 7.54342 8.89265 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008675 B = 0.003843 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.890430 B = 7284.945253 C = 9737.117720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.220 5.220 3 N -0.240 5.240 4 C -0.066 4.066 5 C 0.266 3.734 6 N -0.612 5.612 7 C 0.510 3.490 8 O -0.538 6.538 9 C 0.106 3.894 10 N -0.570 5.570 11 C 0.286 3.714 12 C -0.541 4.541 13 H 0.065 0.935 14 C 0.010 3.990 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.283 1.283 18 H -0.279 1.279 19 H -0.255 1.255 20 C 0.650 3.350 21 O -0.593 6.593 22 O -0.366 6.366 23 C 0.122 3.878 24 C -0.178 4.178 25 C -0.128 4.128 26 C -0.178 4.178 27 N -0.316 5.316 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.194 0.806 32 H 0.438 0.562 33 H 0.143 0.857 34 H 0.148 0.852 35 H -0.001 1.001 36 H 0.027 0.973 37 H 0.267 0.733 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.095 0.905 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.978 -6.850 -13.904 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.124 5.124 3 N -0.082 5.082 4 C -0.252 4.252 5 C 0.007 3.993 6 N -0.265 5.265 7 C 0.296 3.704 8 O -0.412 6.412 9 C -0.021 4.021 10 N -0.307 5.307 11 C 0.166 3.834 12 C -0.579 4.579 13 H 0.083 0.917 14 C -0.189 4.189 15 N -0.568 5.568 16 Si 0.793 3.207 17 H -0.209 1.209 18 H -0.205 1.205 19 H -0.179 1.179 20 C 0.405 3.595 21 O -0.484 6.484 22 O -0.281 6.281 23 C 0.086 3.914 24 C -0.235 4.235 25 C -0.185 4.185 26 C -0.235 4.235 27 N -0.158 5.158 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.211 0.789 32 H 0.278 0.722 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.017 0.983 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.113 0.887 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.898 -5.746 -13.821 23.332 hybrid contribution 1.734 -0.223 0.819 1.931 sum -16.163 -5.969 -13.002 21.586 Atomic orbital electron populations 1.22465 0.67288 1.07144 1.06107 1.51363 1.09039 0.97863 1.54111 1.73371 1.03274 1.17512 1.14004 1.24810 0.94291 0.94319 1.11779 1.20127 0.87689 0.91387 1.00065 1.42582 1.00578 1.10902 1.72436 1.22098 0.84776 0.89477 0.74034 1.90653 1.86356 1.16411 1.47732 1.21562 0.79930 0.91661 1.08911 1.46720 1.28452 1.51465 1.04069 1.18766 0.92508 0.94555 0.77534 1.21705 1.21080 1.08447 1.06709 0.91686 1.25852 0.99158 0.97582 0.96352 1.70077 1.42803 1.29074 1.14897 0.85395 0.78535 0.79465 0.77285 1.20924 1.20482 1.17888 1.18096 0.81180 0.78672 0.81552 1.90851 1.28893 1.41629 1.86995 1.86228 1.57108 1.71043 1.13730 1.22405 0.93607 0.94343 0.81065 1.22450 0.95369 1.01846 1.03882 1.21839 1.00359 1.02430 0.93890 1.22444 1.02265 0.94989 1.03852 1.77979 0.99182 1.10243 1.28358 0.87923 0.86394 0.86641 0.78897 0.72157 0.83963 0.83492 0.98273 0.95555 0.92458 0.91540 0.88795 0.93098 0.91636 0.87772 0.90521 0.93185 0.88660 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.15 11.72 127.77 1.50 2.65 16 2 N -0.22 -5.17 4.69 -206.52 -0.97 -6.13 16 3 N -0.24 -6.90 12.01 -56.97 -0.68 -7.58 16 4 C -0.07 -2.11 10.85 85.23 0.92 -1.18 16 5 C 0.27 7.59 8.19 132.99 1.09 8.68 16 6 N -0.61 -14.78 5.45 -307.45 -1.68 -16.46 16 7 C 0.51 15.85 7.87 87.66 0.69 16.54 16 8 O -0.54 -21.69 13.65 -3.07 -0.04 -21.73 16 9 C 0.11 3.18 5.89 85.64 0.50 3.68 16 10 N -0.57 -24.61 1.94 -960.93 -1.87 -26.48 16 11 C 0.29 15.32 5.16 85.63 0.44 15.77 16 12 C -0.54 -29.86 9.39 25.60 0.24 -29.62 16 13 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.01 0.55 5.46 84.65 0.46 1.01 16 15 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 16 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 20 C 0.65 28.70 7.70 129.79 1.00 29.70 16 21 O -0.59 -30.56 11.46 19.82 0.23 -30.33 16 22 O -0.37 -12.82 8.71 -55.48 -0.48 -13.30 16 23 C 0.12 3.51 1.13 -10.79 -0.01 3.50 16 24 C -0.18 -5.12 8.37 71.98 0.60 -4.51 16 25 C -0.13 -2.41 8.85 71.98 0.64 -1.78 16 26 C -0.18 -5.41 8.37 71.98 0.60 -4.81 16 27 N -0.32 -8.17 12.70 -54.42 -0.69 -8.86 16 28 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.19 6.93 5.98 -2.91 -0.02 6.91 16 32 H 0.44 6.91 8.82 -92.71 -0.82 6.09 16 33 H 0.14 3.68 8.07 -2.39 -0.02 3.67 16 34 H 0.15 3.29 7.38 -2.39 -0.02 3.28 16 35 H 0.00 -0.06 7.42 -2.39 -0.02 -0.07 16 36 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 37 H 0.27 15.03 8.31 -92.72 -0.77 14.26 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 2.06 8.14 -2.38 -0.02 2.05 16 40 H 0.05 1.93 5.88 -2.39 -0.01 1.91 16 41 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.05 1.96 5.88 -2.39 -0.01 1.94 16 45 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -82.96 388.75 5.00 -77.96 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.20 Total: 23.13 kcal Atomic # 6 Polarization: 30.94 SS G_CDS: 8.68 Total: 39.62 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -5.60 Total: -120.88 kcal Atomic # 8 Polarization: -65.06 SS G_CDS: -0.30 Total: -65.36 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -82.96 5.00 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184848378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.461 kcal (2) G-P(sol) polarization free energy of solvation -82.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds