Wall clock time and date at job start Tue Mar 31 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 C 1.53004 * 109.47201 * 240.00206 * 2 1 3 5 5 O 1.45201 * 109.47345 * 120.00224 * 2 1 3 6 6 C 1.34630 * 117.00046 * 59.99605 * 5 2 1 7 7 O 1.21516 * 120.00250 * 0.02562 * 6 5 2 8 8 N 1.34784 * 120.00065 * 180.02562 * 6 5 2 9 9 C 1.46494 * 119.99635 * 0.02562 * 8 6 5 10 10 C 1.50694 * 109.47248 * 90.00174 * 9 8 6 11 11 H 1.07999 * 119.99904 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00385 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00419 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99411 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47279 * 90.00270 * 14 12 10 16 16 H 1.48505 * 109.46775 * 209.99777 * 14 12 10 17 17 H 1.48495 * 109.47628 * 329.99523 * 14 12 10 18 18 C 1.46493 * 119.99864 * 179.72923 * 8 6 5 19 19 C 1.50702 * 109.47427 * 89.99800 * 18 8 6 20 20 O 1.21209 * 119.99792 * 0.02562 * 19 18 8 21 21 N 1.34774 * 119.99823 * 179.97438 * 19 18 8 22 22 C 1.36943 * 126.04285 * 179.71184 * 21 19 18 23 23 C 1.35242 * 107.58015 * 179.84080 * 22 21 19 24 24 N 1.40729 * 126.08372 * 180.15998 * 23 22 21 25 25 C 1.41332 * 107.83210 * 0.42964 * 23 22 21 26 26 N 1.39691 * 125.84555 * 179.70916 * 25 23 22 27 27 N 1.31075 * 108.31712 * 359.72963 * 25 23 22 28 28 H 1.09004 * 109.46522 * 299.99848 * 1 2 3 29 29 H 1.08993 * 109.46822 * 59.99709 * 1 2 3 30 30 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47093 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47004 * 299.99872 * 3 2 1 33 33 H 1.08997 * 109.47133 * 59.99999 * 3 2 1 34 34 H 1.09006 * 109.46751 * 299.99920 * 4 2 1 35 35 H 1.08994 * 109.46964 * 59.99535 * 4 2 1 36 36 H 1.08998 * 109.47138 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47006 * 210.00121 * 9 8 6 38 38 H 1.09004 * 109.47665 * 329.99813 * 9 8 6 39 39 H 0.96993 * 119.99970 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.47192 * 209.99937 * 18 8 6 41 41 H 1.08996 * 109.47342 * 329.99648 * 18 8 6 42 42 H 1.07997 * 126.20934 * 0.02562 * 22 21 19 43 43 H 0.97007 * 120.00039 * 180.29113 * 24 23 22 44 44 H 0.97002 * 120.00022 * 0.29091 * 24 23 22 45 45 H 0.97002 * 120.00163 * 179.97438 * 26 25 23 46 46 H 0.96997 * 119.99714 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 2.9116 -2.0174 3.4237 10 6 2.0405 -1.3855 4.4786 11 1 0.9655 -1.4589 4.4063 12 6 2.6160 -0.7136 5.5363 13 7 1.8557 -0.1617 6.4566 14 14 4.4754 -0.5860 5.6610 15 1 4.9361 0.6371 4.9560 16 1 4.8717 -0.5124 7.0903 17 1 5.0967 -1.7812 5.0361 18 6 1.6688 -4.0649 2.5864 19 6 2.6891 -4.9605 1.9322 20 8 3.6539 -4.4776 1.3798 21 7 2.5293 -6.2984 1.9623 22 6 3.3724 -7.2233 1.4062 23 6 2.8591 -8.4485 1.6600 24 7 3.4174 -9.6789 1.2662 25 6 1.6590 -8.2732 2.3856 26 7 0.8193 -9.2944 2.8368 27 7 1.4684 -6.9885 2.5624 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 3.5611 -2.7606 3.8862 38 1 3.5205 -1.2490 2.9473 39 1 2.2606 0.3112 7.2004 40 1 1.6077 -4.2994 3.6491 41 1 0.6953 -4.2241 2.1227 42 1 4.2835 -7.0126 0.8660 43 1 2.9702 -10.5092 1.4931 44 1 4.2494 -9.6966 0.7677 45 1 0.0128 -9.0768 3.3298 46 1 1.0432 -10.2210 2.6577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184848602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:23 Heat of formation + Delta-G solvation = -42.751559 kcal Electronic energy + Delta-G solvation = -30642.101405 eV Core-core repulsion = 26375.630524 eV Total energy + Delta-G solvation = -4266.470881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.77108 -41.81072 -40.26854 -38.39034 -36.76603 -36.08770 -34.94081 -34.85976 -34.55786 -31.88138 -30.77144 -29.74512 -28.32003 -28.26534 -28.21841 -24.72152 -24.24371 -22.76046 -21.96120 -21.14489 -20.21071 -19.37832 -18.83838 -18.80704 -17.84030 -17.49946 -17.37742 -17.16850 -17.01602 -16.72783 -16.61517 -16.16680 -15.88550 -15.52073 -15.40728 -15.07016 -15.04503 -14.56699 -14.32089 -13.89627 -13.79817 -13.49538 -13.29024 -13.09932 -12.97431 -12.81767 -12.76241 -12.53625 -12.47900 -12.25009 -12.19871 -12.09183 -11.99160 -11.90980 -11.77424 -11.67363 -11.30369 -11.04469 -10.79628 -9.74796 -9.51650 -8.31404 -8.28244 -6.37468 -0.02815 0.98788 1.35098 1.37440 1.40081 1.48196 1.68577 1.83948 1.89795 2.32648 2.54838 2.91047 3.02311 3.04851 3.19917 3.80898 3.82582 3.85878 3.99472 4.02800 4.28474 4.33803 4.40242 4.50134 4.57114 4.64233 4.73827 4.78705 4.80850 4.86170 4.89768 4.99233 5.11310 5.32661 5.34732 5.39707 5.42938 5.52853 5.61335 6.11504 6.15809 6.26669 6.41174 6.54994 6.63393 6.64671 7.02142 7.16388 7.23354 7.37083 8.84739 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009331 B = 0.003993 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.936415 B = 7011.300955 C = 8885.955195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.113 3.887 3 C -0.134 4.134 4 C -0.171 4.171 5 O -0.364 6.364 6 C 0.660 3.340 7 O -0.597 6.597 8 N -0.573 5.573 9 C 0.232 3.768 10 C -0.537 4.537 11 H 0.038 0.962 12 C 0.027 3.973 13 N -0.936 5.936 14 Si 0.935 3.065 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.251 1.251 18 C 0.136 3.864 19 C 0.543 3.457 20 O -0.520 6.520 21 N -0.369 5.369 22 C -0.042 4.042 23 C 0.082 3.918 24 N -0.849 5.849 25 C 0.348 3.652 26 N -0.812 5.812 27 N -0.348 5.348 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.270 0.730 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.184 0.816 43 H 0.411 0.589 44 H 0.411 0.589 45 H 0.417 0.583 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -16.898 -12.490 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.228 4.228 5 O -0.279 6.279 6 C 0.416 3.584 7 O -0.490 6.490 8 N -0.310 5.310 9 C 0.110 3.890 10 C -0.576 4.576 11 H 0.056 0.944 12 C -0.173 4.173 13 N -0.575 5.575 14 Si 0.758 3.242 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.175 1.175 18 C 0.011 3.989 19 C 0.333 3.667 20 O -0.390 6.390 21 N -0.174 5.174 22 C -0.179 4.179 23 C -0.029 4.029 24 N -0.398 5.398 25 C 0.078 3.922 26 N -0.368 5.368 27 N -0.181 5.181 28 H 0.068 0.932 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.139 0.861 42 H 0.201 0.799 43 H 0.241 0.759 44 H 0.242 0.758 45 H 0.248 0.752 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.307 -15.473 -12.497 19.933 hybrid contribution 0.957 -0.848 0.225 1.299 sum 2.265 -16.322 -12.272 20.546 Atomic orbital electron populations 1.22425 0.93922 1.03570 1.03227 1.22530 0.94943 0.92958 0.81858 1.21867 1.02199 0.90921 1.04086 1.22407 1.01219 1.02022 0.97176 1.86439 1.71132 1.23039 1.47246 1.17952 0.78154 0.80914 0.81418 1.90779 1.43009 1.71215 1.44007 1.46412 1.52944 1.10104 1.21501 1.19509 0.89978 0.93196 0.86305 1.21418 0.93779 1.35027 1.07341 0.94359 1.25623 1.03022 0.94007 0.94616 1.70016 1.37627 1.36606 1.13287 0.85901 0.79997 0.80166 0.78133 1.18908 1.19999 1.17504 1.21030 0.96799 0.77663 1.03436 1.21301 0.86932 0.80063 0.78388 1.90687 1.31997 1.73275 1.43078 1.46099 1.19805 1.05282 1.46205 1.22086 1.00846 0.87172 1.07816 1.17556 0.94218 0.88383 1.02707 1.41453 1.29831 1.01948 1.66606 1.19688 0.90268 0.89114 0.93142 1.41322 1.26709 1.04749 1.63999 1.77413 1.10603 1.03388 1.26697 0.93209 0.88125 0.91994 0.91586 0.86873 0.92349 0.92285 0.88150 0.92579 0.94362 0.94615 0.92092 0.85125 0.86073 0.79893 0.75850 0.75841 0.75161 0.74164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 8.37 71.98 0.60 -5.10 16 2 C 0.11 3.90 1.13 -10.79 -0.01 3.89 16 3 C -0.13 -3.65 8.85 71.98 0.64 -3.01 16 4 C -0.17 -5.30 8.37 71.98 0.60 -4.69 16 5 O -0.36 -16.45 8.71 -55.39 -0.48 -16.94 16 6 C 0.66 31.13 7.70 129.79 1.00 32.13 16 7 O -0.60 -27.81 11.46 19.79 0.23 -27.58 16 8 N -0.57 -27.07 1.94 -960.94 -1.87 -28.94 16 9 C 0.23 11.73 4.23 85.63 0.36 12.09 16 10 C -0.54 -31.09 9.94 25.60 0.25 -30.84 16 11 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 12 C 0.03 1.54 5.47 84.66 0.46 2.00 16 13 N -0.94 -57.48 13.96 21.45 0.30 -57.18 16 14 Si 0.94 43.74 27.47 68.60 1.88 45.63 16 15 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.25 -11.16 6.54 99.48 0.65 -10.51 16 18 C 0.14 5.59 5.48 85.64 0.47 6.05 16 19 C 0.54 21.45 7.94 87.66 0.70 22.15 16 20 O -0.52 -23.02 16.71 -2.81 -0.05 -23.07 16 21 N -0.37 -12.22 3.66 -309.96 -1.13 -13.35 16 22 C -0.04 -1.14 11.09 83.20 0.92 -0.22 16 23 C 0.08 1.65 7.28 37.78 0.28 1.93 16 24 N -0.85 -8.73 9.19 -51.34 -0.47 -9.20 16 25 C 0.35 7.50 8.46 133.76 1.13 8.63 16 26 N -0.81 -9.32 9.14 -54.29 -0.50 -9.82 16 27 N -0.35 -10.30 12.05 -54.22 -0.65 -10.95 16 28 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.34 5.88 -2.39 -0.01 2.32 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 2.17 5.88 -2.38 -0.01 2.16 16 35 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.89 7.13 -2.39 -0.02 1.87 16 38 H 0.04 1.84 6.80 -2.38 -0.02 1.82 16 39 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 40 H 0.13 5.14 8.07 -2.39 -0.02 5.12 16 41 H 0.12 4.83 7.42 -2.39 -0.02 4.81 16 42 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.41 1.94 8.47 -92.70 -0.79 1.15 16 44 H 0.41 3.13 8.96 -92.71 -0.83 2.30 16 45 H 0.42 4.19 8.96 -92.71 -0.83 3.36 16 46 H 0.43 1.89 8.47 -92.71 -0.78 1.10 16 Total: -1.00 -81.03 386.82 2.44 -78.59 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -2.22 Total: 27.79 kcal Atomic # 6 Polarization: 37.62 SS G_CDS: 7.40 Total: 45.02 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -4.33 Total: -129.45 kcal Atomic # 8 Polarization: -67.28 SS G_CDS: -0.30 Total: -67.59 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Total: -81.03 2.44 -78.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184848602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.839 kcal (2) G-P(sol) polarization free energy of solvation -81.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds