Wall clock time and date at job start Tue Mar 31 2020 22:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40298 * 126.84822 * 2 1 4 4 N 1.28740 * 108.17847 * 180.27952 * 3 2 1 5 5 C 1.33275 * 109.98837 * 359.74123 * 4 3 2 6 6 C 1.35800 * 108.87279 * 0.02562 * 5 4 3 7 7 N 1.39537 * 126.67662 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99452 * 0.02562 * 7 6 5 9 9 O 1.21293 * 120.00456 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72537 * 8 7 6 11 11 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 12 12 C 1.46505 * 119.99983 * 89.99572 * 11 10 8 13 13 C 1.50701 * 109.46936 * 90.00564 * 12 11 10 14 14 H 1.08003 * 120.00005 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99754 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00357 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99635 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47364 * 89.99840 * 17 15 13 19 19 H 1.48504 * 109.47076 * 209.99891 * 17 15 13 20 20 H 1.48504 * 109.47185 * 329.99437 * 17 15 13 21 21 C 1.34771 * 120.00140 * 270.00216 * 11 10 8 22 22 O 1.21509 * 119.99981 * 359.97438 * 21 11 10 23 23 O 1.34640 * 120.00229 * 179.97438 * 21 11 10 24 24 C 1.45201 * 116.99770 * 179.97438 * 23 21 11 25 25 C 1.53000 * 109.47165 * 60.00060 * 24 23 21 26 26 C 1.53001 * 109.46861 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47455 * 300.00030 * 24 23 21 28 28 H 1.09004 * 109.47215 * 270.16138 * 1 2 3 29 29 H 1.08994 * 109.47628 * 30.16248 * 1 2 3 30 30 H 1.09005 * 109.47466 * 150.16816 * 1 2 3 31 31 H 1.07993 * 125.56263 * 179.97438 * 5 4 3 32 32 H 0.97001 * 120.00063 * 180.02562 * 7 6 5 33 33 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 34 34 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 35 35 H 1.08997 * 109.47067 * 210.00075 * 12 11 10 36 36 H 1.08998 * 109.47093 * 330.00363 * 12 11 10 37 37 H 0.96993 * 119.99795 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.46938 * 60.00042 * 25 24 23 39 39 H 1.09001 * 109.47249 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47256 * 299.99492 * 25 24 23 41 41 H 1.09000 * 109.46955 * 59.99978 * 26 24 23 42 42 H 1.09001 * 109.47325 * 180.02562 * 26 24 23 43 43 H 1.09005 * 109.47451 * 300.00087 * 26 24 23 44 44 H 1.09001 * 109.47019 * 59.99838 * 27 24 23 45 45 H 1.08998 * 109.47406 * 180.02562 * 27 24 23 46 46 H 1.09007 * 109.47019 * 300.00015 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1227 0.0000 4 7 3.5260 0.7106 -0.0060 5 6 3.5566 -0.6218 -0.0043 6 6 2.2821 -1.0905 0.0025 7 7 1.8862 -2.4285 0.0058 8 6 2.8143 -3.4058 0.0025 9 8 3.9936 -3.1224 -0.0028 10 6 2.3868 -4.8509 0.0123 11 7 3.5727 -5.7110 0.0131 12 6 4.1701 -6.1338 1.2823 13 6 3.5408 -7.4289 1.7269 14 1 2.7724 -7.8907 1.1246 15 6 3.9452 -8.0237 2.9032 16 7 4.8805 -7.4612 3.6369 17 14 3.1647 -9.6288 3.4547 18 1 3.9369 -10.7704 2.9019 19 1 3.1715 -9.6985 4.9380 20 1 1.7650 -9.6933 2.9626 21 6 4.1142 -6.1134 -1.1536 22 8 3.6185 -5.7630 -2.2062 23 8 5.2044 -6.9034 -1.1529 24 6 5.7332 -7.2983 -2.4462 25 6 6.1303 -6.0504 -3.2374 26 6 6.9625 -8.1866 -2.2449 27 6 4.6643 -8.0734 -3.2192 28 1 -0.3634 0.0029 1.0277 29 1 -0.3634 0.8884 -0.5163 30 1 -0.3634 -0.8915 -0.5112 31 1 4.4494 -1.2295 -0.0087 32 1 0.9431 -2.6552 0.0104 33 1 1.7940 -5.0485 0.9055 34 1 1.7879 -5.0587 -0.8744 35 1 5.2422 -6.2778 1.1490 36 1 3.9975 -5.3676 2.0381 37 1 5.1648 -7.8795 4.4645 38 1 6.8919 -5.4982 -2.6867 39 1 6.5277 -6.3468 -4.2081 40 1 5.2548 -5.4172 -3.3809 41 1 6.6799 -9.0756 -1.6811 42 1 7.3598 -8.4827 -3.2158 43 1 7.7239 -7.6340 -1.6944 44 1 3.7887 -7.4402 -3.3626 45 1 5.0614 -8.3702 -4.1899 46 1 4.3813 -8.9625 -2.6556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184848731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:33 Heat of formation + Delta-G solvation = -2.266684 kcal Electronic energy + Delta-G solvation = -30670.643871 eV Core-core repulsion = 26405.928546 eV Total energy + Delta-G solvation = -4264.715325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.13402 -40.38836 -39.58809 -36.98553 -35.52272 -34.97872 -33.96848 -33.42950 -32.64034 -30.17943 -28.29953 -27.76349 -27.08901 -27.06926 -26.71092 -23.20680 -23.00307 -22.21474 -21.18591 -20.30181 -18.85643 -18.26751 -17.35776 -17.04519 -16.60824 -16.36422 -16.17996 -15.96886 -15.29695 -15.04895 -14.88089 -14.48978 -14.35389 -14.08016 -13.74275 -13.62923 -13.48476 -13.20699 -12.96311 -12.49318 -12.21717 -12.02488 -11.89093 -11.84198 -11.59595 -11.53387 -11.41457 -11.34770 -11.15029 -11.07615 -11.03122 -10.83980 -10.75750 -10.26577 -10.14340 -9.86844 -9.85734 -9.78601 -9.47371 -8.56627 -8.42916 -8.03737 -6.17532 -4.24801 1.18597 1.71150 2.43461 2.62631 2.84584 2.96547 3.21810 3.29077 3.30352 3.52866 4.18998 4.28704 4.50752 4.54529 4.72085 4.92582 4.98152 5.06747 5.11195 5.16556 5.17461 5.23981 5.29553 5.37078 5.46503 5.58818 5.73342 5.79047 5.94788 5.98665 6.07619 6.15802 6.26456 6.34556 6.41873 6.56637 6.58741 6.67644 6.99721 7.05192 7.26500 7.41185 7.75019 7.91432 8.04148 8.10529 8.23680 8.76532 9.02750 9.41797 10.90067 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009329 B = 0.003809 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.717686 B = 7350.065173 C = 9344.105183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.393 5.393 3 N -0.083 5.083 4 N -0.224 5.224 5 C -0.086 4.086 6 C 0.289 3.711 7 N -0.647 5.647 8 C 0.505 3.495 9 O -0.483 6.483 10 C 0.130 3.870 11 N -0.566 5.566 12 C 0.247 3.753 13 C -0.538 4.538 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.888 5.888 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.665 3.335 22 O -0.599 6.599 23 O -0.337 6.337 24 C 0.133 3.867 25 C -0.180 4.180 26 C -0.139 4.139 27 C -0.180 4.180 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.207 0.793 32 H 0.413 0.587 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.048 0.952 36 H 0.036 0.964 37 H 0.265 0.735 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 5.429 -9.357 13.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.188 5.188 3 N -0.062 5.062 4 N -0.093 5.093 5 C -0.246 4.246 6 C 0.061 3.939 7 N -0.298 5.298 8 C 0.290 3.710 9 O -0.352 6.352 10 C 0.002 3.998 11 N -0.302 5.302 12 C 0.128 3.872 13 C -0.576 4.576 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.421 3.579 22 O -0.492 6.492 23 O -0.250 6.250 24 C 0.095 3.905 25 C -0.237 4.237 26 C -0.196 4.196 27 C -0.237 4.237 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.224 0.776 32 H 0.249 0.751 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.301 7.096 -9.513 13.934 hybrid contribution -1.217 -2.099 0.460 2.470 sum -8.519 4.997 -9.054 13.398 Atomic orbital electron populations 1.22005 0.73716 1.05142 1.04226 1.50544 1.08099 1.04403 1.55741 1.82016 0.93829 1.04017 1.26362 1.74218 1.12716 1.11749 1.10571 1.23579 0.96846 0.90314 1.13869 1.18932 0.91463 0.81515 1.02017 1.43164 1.11665 1.01008 1.73948 1.22158 0.85894 0.88138 0.74772 1.90658 1.17251 1.82585 1.44731 1.21007 0.89102 0.83464 1.06238 1.46657 1.28748 1.48051 1.06780 1.19476 0.94903 0.95089 0.77684 1.21433 1.22302 1.07238 1.06672 0.92121 1.24917 0.94921 0.97625 0.96245 1.69934 1.28973 1.39361 1.14379 0.86517 0.79638 0.83643 0.77728 1.20488 1.21126 1.19863 1.17846 0.79182 0.77141 0.83740 1.90780 1.65235 1.62534 1.30671 1.86496 1.41744 1.62847 1.33934 1.21945 0.93482 0.94497 0.80558 1.22491 1.03424 0.98208 0.99601 1.21814 0.95881 0.99698 1.02254 1.22482 1.00556 1.00988 0.99670 0.89712 0.88160 0.89469 0.77631 0.75079 0.85753 0.86770 0.93381 0.94616 0.92502 0.92304 0.91899 0.89523 0.91322 0.90857 0.91524 0.89535 0.91931 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.39 59.84 0.68 1.21 16 2 N -0.39 -4.62 4.09 -66.98 -0.27 -4.89 16 3 N -0.08 -1.25 13.81 60.35 0.83 -0.42 16 4 N -0.22 -3.77 12.32 30.23 0.37 -3.40 16 5 C -0.09 -1.41 10.76 -17.80 -0.19 -1.60 16 6 C 0.29 3.89 7.76 -152.29 -1.18 2.71 16 7 N -0.65 -7.22 5.42 -11.28 -0.06 -7.28 16 8 C 0.50 7.60 7.86 -10.98 -0.09 7.51 16 9 O -0.48 -9.25 13.60 5.55 0.08 -9.18 16 10 C 0.13 1.93 5.89 -5.19 -0.03 1.90 16 11 N -0.57 -11.41 1.94 -182.24 -0.35 -11.77 16 12 C 0.25 5.91 5.17 -5.19 -0.03 5.88 16 13 C -0.54 -13.68 9.39 -34.44 -0.32 -14.00 16 14 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 17 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 C 0.67 13.79 7.70 54.05 0.42 14.21 16 22 O -0.60 -12.09 11.46 -19.28 -0.22 -12.31 16 23 O -0.34 -7.01 8.71 -40.32 -0.35 -7.37 16 24 C 0.13 2.18 1.13 -90.62 -0.10 2.08 16 25 C -0.18 -2.76 8.37 37.16 0.31 -2.45 16 26 C -0.14 -1.93 8.85 37.16 0.33 -1.60 16 27 C -0.18 -2.71 8.37 37.16 0.31 -2.40 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.28 7.65 -51.93 -0.40 -0.12 16 31 H 0.21 3.63 5.83 -52.49 -0.31 3.32 16 32 H 0.41 2.72 8.16 -40.82 -0.33 2.39 16 33 H 0.12 1.58 8.07 -51.92 -0.42 1.16 16 34 H 0.11 1.46 7.42 -51.93 -0.39 1.08 16 35 H 0.05 1.29 7.37 -51.93 -0.38 0.90 16 36 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.52 5.88 -51.93 -0.31 1.21 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -34.42 387.34 -5.02 -39.45 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.60 Total: 5.00 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 0.01 Total: 15.09 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 1.25 Total: -51.63 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.50 Total: -28.85 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.42 -5.02 -39.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184848731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.179 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds