Wall clock time and date at job start Tue Mar 31 2020 22:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40298 * 126.84822 * 2 1 4 4 N 1.28740 * 108.17847 * 180.27952 * 3 2 1 5 5 C 1.33275 * 109.98837 * 359.74123 * 4 3 2 6 6 C 1.35800 * 108.87279 * 0.02562 * 5 4 3 7 7 N 1.39537 * 126.67662 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99452 * 0.02562 * 7 6 5 9 9 O 1.21293 * 120.00456 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72537 * 8 7 6 11 11 N 1.46499 * 109.47257 * 180.27849 * 10 8 7 12 12 C 1.46505 * 119.99983 * 89.99572 * 11 10 8 13 13 C 1.50701 * 109.46936 * 90.00564 * 12 11 10 14 14 H 1.08003 * 120.00005 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99754 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00357 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99635 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47364 * 89.99840 * 17 15 13 19 19 H 1.48504 * 109.47076 * 209.99891 * 17 15 13 20 20 H 1.48504 * 109.47185 * 329.99437 * 17 15 13 21 21 C 1.34771 * 120.00140 * 270.00216 * 11 10 8 22 22 O 1.21509 * 119.99981 * 359.97438 * 21 11 10 23 23 O 1.34640 * 120.00229 * 179.97438 * 21 11 10 24 24 C 1.45201 * 116.99770 * 179.97438 * 23 21 11 25 25 C 1.53000 * 109.47165 * 60.00060 * 24 23 21 26 26 C 1.53001 * 109.46861 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47455 * 300.00030 * 24 23 21 28 28 H 1.09004 * 109.47215 * 270.16138 * 1 2 3 29 29 H 1.08994 * 109.47628 * 30.16248 * 1 2 3 30 30 H 1.09005 * 109.47466 * 150.16816 * 1 2 3 31 31 H 1.07993 * 125.56263 * 179.97438 * 5 4 3 32 32 H 0.97001 * 120.00063 * 180.02562 * 7 6 5 33 33 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 34 34 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 35 35 H 1.08997 * 109.47067 * 210.00075 * 12 11 10 36 36 H 1.08998 * 109.47093 * 330.00363 * 12 11 10 37 37 H 0.96993 * 119.99795 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.46938 * 60.00042 * 25 24 23 39 39 H 1.09001 * 109.47249 * 179.97438 * 25 24 23 40 40 H 1.09002 * 109.47256 * 299.99492 * 25 24 23 41 41 H 1.09000 * 109.46955 * 59.99978 * 26 24 23 42 42 H 1.09001 * 109.47325 * 180.02562 * 26 24 23 43 43 H 1.09005 * 109.47451 * 300.00087 * 26 24 23 44 44 H 1.09001 * 109.47019 * 59.99838 * 27 24 23 45 45 H 1.08998 * 109.47406 * 180.02562 * 27 24 23 46 46 H 1.09007 * 109.47019 * 300.00015 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3063 1.1227 0.0000 4 7 3.5260 0.7106 -0.0060 5 6 3.5566 -0.6218 -0.0043 6 6 2.2821 -1.0905 0.0025 7 7 1.8862 -2.4285 0.0058 8 6 2.8143 -3.4058 0.0025 9 8 3.9936 -3.1224 -0.0028 10 6 2.3868 -4.8509 0.0123 11 7 3.5727 -5.7110 0.0131 12 6 4.1701 -6.1338 1.2823 13 6 3.5408 -7.4289 1.7269 14 1 2.7724 -7.8907 1.1246 15 6 3.9452 -8.0237 2.9032 16 7 4.8805 -7.4612 3.6369 17 14 3.1647 -9.6288 3.4547 18 1 3.9369 -10.7704 2.9019 19 1 3.1715 -9.6985 4.9380 20 1 1.7650 -9.6933 2.9626 21 6 4.1142 -6.1134 -1.1536 22 8 3.6185 -5.7630 -2.2062 23 8 5.2044 -6.9034 -1.1529 24 6 5.7332 -7.2983 -2.4462 25 6 6.1303 -6.0504 -3.2374 26 6 6.9625 -8.1866 -2.2449 27 6 4.6643 -8.0734 -3.2192 28 1 -0.3634 0.0029 1.0277 29 1 -0.3634 0.8884 -0.5163 30 1 -0.3634 -0.8915 -0.5112 31 1 4.4494 -1.2295 -0.0087 32 1 0.9431 -2.6552 0.0104 33 1 1.7940 -5.0485 0.9055 34 1 1.7879 -5.0587 -0.8744 35 1 5.2422 -6.2778 1.1490 36 1 3.9975 -5.3676 2.0381 37 1 5.1648 -7.8795 4.4645 38 1 6.8919 -5.4982 -2.6867 39 1 6.5277 -6.3468 -4.2081 40 1 5.2548 -5.4172 -3.3809 41 1 6.6799 -9.0756 -1.6811 42 1 7.3598 -8.4827 -3.2158 43 1 7.7239 -7.6340 -1.6944 44 1 3.7887 -7.4402 -3.3626 45 1 5.0614 -8.3702 -4.1899 46 1 4.3813 -8.9625 -2.6556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184848731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:32 Heat of formation + Delta-G solvation = -26.060652 kcal Electronic energy + Delta-G solvation = -30671.675655 eV Core-core repulsion = 26405.928546 eV Total energy + Delta-G solvation = -4265.747109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24693 -41.83236 -40.87532 -38.41498 -36.75582 -36.52318 -34.94047 -34.81561 -34.51730 -31.42608 -29.81825 -28.60232 -28.28776 -28.27466 -28.23043 -25.02527 -24.29484 -23.33613 -22.44549 -21.50637 -20.26961 -19.35274 -18.91666 -18.47781 -18.17563 -17.65827 -17.39493 -17.21484 -16.74597 -16.52283 -16.21101 -16.01941 -15.52773 -15.24105 -15.10689 -14.92664 -14.36155 -14.30975 -14.20193 -13.80785 -13.50751 -13.38031 -13.19178 -13.06513 -12.98014 -12.87803 -12.77696 -12.72884 -12.58153 -12.50492 -12.44601 -12.23928 -12.15987 -11.97165 -11.79840 -11.37152 -11.23870 -10.97823 -10.81965 -10.57684 -9.68058 -9.57362 -8.16810 -6.31767 0.08530 0.68261 1.22312 1.36936 1.45616 1.47587 1.57080 1.66193 1.78846 2.10539 2.43593 3.06623 3.15211 3.35948 3.53685 3.80140 3.84331 3.89161 3.98429 4.03461 4.13895 4.32915 4.34956 4.49621 4.55366 4.60930 4.67246 4.71686 4.74045 4.78262 4.81210 4.89196 4.92711 5.14192 5.19467 5.25072 5.35661 5.40725 5.54854 5.57882 5.61637 5.76314 6.05290 6.08160 6.44132 6.77834 6.80413 7.09746 7.35752 7.49119 8.90597 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009329 B = 0.003809 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.717686 B = 7350.065173 C = 9344.105183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.372 5.372 3 N -0.097 5.097 4 N -0.253 5.253 5 C -0.113 4.113 6 C 0.293 3.707 7 N -0.619 5.619 8 C 0.508 3.492 9 O -0.530 6.530 10 C 0.125 3.875 11 N -0.573 5.573 12 C 0.269 3.731 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.017 3.983 16 N -0.926 5.926 17 Si 0.963 3.037 18 H -0.280 1.280 19 H -0.284 1.284 20 H -0.259 1.259 21 C 0.658 3.342 22 O -0.597 6.597 23 O -0.367 6.367 24 C 0.115 3.885 25 C -0.172 4.172 26 C -0.135 4.135 27 C -0.171 4.171 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.439 0.561 33 H 0.151 0.849 34 H 0.142 0.858 35 H 0.009 0.991 36 H 0.021 0.979 37 H 0.266 0.734 38 H 0.047 0.953 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 4.243 -10.459 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.167 5.167 3 N -0.077 5.077 4 N -0.121 5.121 5 C -0.274 4.274 6 C 0.064 3.936 7 N -0.272 5.272 8 C 0.294 3.706 9 O -0.403 6.403 10 C -0.001 4.001 11 N -0.310 5.310 12 C 0.148 3.852 13 C -0.578 4.578 14 H 0.083 0.917 15 C -0.183 4.183 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.206 1.206 19 H -0.209 1.209 20 H -0.183 1.183 21 C 0.414 3.586 22 O -0.490 6.490 23 O -0.281 6.281 24 C 0.079 3.921 25 C -0.229 4.229 26 C -0.192 4.192 27 C -0.229 4.229 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.203 0.797 32 H 0.280 0.720 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.027 0.973 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.109 5.945 -10.644 15.838 hybrid contribution -0.431 -1.683 0.737 1.888 sum -10.540 4.262 -9.907 15.080 Atomic orbital electron populations 1.22653 0.69884 1.07670 1.06437 1.50835 1.09856 1.02727 1.53320 1.81885 0.93776 1.05334 1.26682 1.74177 1.13890 1.12102 1.11956 1.23425 0.97823 0.90461 1.15713 1.18717 0.90998 0.82503 1.01431 1.42743 1.12489 0.99454 1.72513 1.22165 0.85578 0.88777 0.74045 1.90672 1.19406 1.83202 1.46997 1.21384 0.87569 0.82347 1.08787 1.46618 1.30047 1.48928 1.05363 1.18912 0.92940 0.94415 0.78895 1.21666 1.22024 1.07575 1.06557 0.91739 1.25747 0.95299 1.00878 0.96402 1.70066 1.30513 1.41070 1.14889 0.85487 0.79327 0.79251 0.77179 1.20599 1.20938 1.18265 1.18007 0.79353 0.77312 0.83928 1.90767 1.65338 1.62614 1.30324 1.86487 1.41886 1.62908 1.36835 1.22454 0.94764 0.95491 0.79434 1.22412 1.02104 0.97342 1.01057 1.21861 0.94555 0.98602 1.04194 1.22406 0.99464 0.99963 1.01021 0.87562 0.86699 0.86042 0.79744 0.72019 0.83199 0.84021 0.97330 0.96117 0.92502 0.93343 0.88414 0.91887 0.92115 0.87064 0.92376 0.91446 0.88545 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 11.39 127.77 1.46 2.03 16 2 N -0.37 -8.05 4.09 -365.82 -1.50 -9.55 16 3 N -0.10 -2.91 13.81 37.02 0.51 -2.40 16 4 N -0.25 -8.82 12.32 -58.27 -0.72 -9.53 16 5 C -0.11 -3.84 10.76 83.91 0.90 -2.94 16 6 C 0.29 7.66 7.76 130.91 1.02 8.67 16 7 N -0.62 -12.68 5.42 -308.00 -1.67 -14.35 16 8 C 0.51 15.08 7.86 87.66 0.69 15.77 16 9 O -0.53 -21.17 13.60 -3.07 -0.04 -21.21 16 10 C 0.13 3.57 5.89 85.63 0.50 4.08 16 11 N -0.57 -23.37 1.94 -960.90 -1.87 -25.24 16 12 C 0.27 13.28 5.17 85.63 0.44 13.72 16 13 C -0.54 -27.56 9.39 25.60 0.24 -27.32 16 14 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 15 C 0.02 0.87 5.46 84.65 0.46 1.33 16 16 N -0.93 -52.28 13.29 21.45 0.28 -51.99 16 17 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 C 0.66 27.71 7.70 129.79 1.00 28.71 16 22 O -0.60 -24.03 11.46 19.81 0.23 -23.81 16 23 O -0.37 -15.70 8.71 -55.49 -0.48 -16.18 16 24 C 0.11 3.73 1.13 -10.79 -0.01 3.71 16 25 C -0.17 -5.19 8.37 71.98 0.60 -4.58 16 26 C -0.14 -3.60 8.85 71.98 0.64 -2.96 16 27 C -0.17 -4.91 8.37 71.98 0.60 -4.31 16 28 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.17 7.65 -2.38 -0.02 0.16 16 31 H 0.19 7.07 5.83 -2.91 -0.02 7.06 16 32 H 0.44 4.19 8.16 -92.71 -0.76 3.44 16 33 H 0.15 3.47 8.07 -2.38 -0.02 3.45 16 34 H 0.14 3.27 7.42 -2.39 -0.02 3.25 16 35 H 0.01 0.49 7.37 -2.39 -0.02 0.47 16 36 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 37 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 2.21 5.88 -2.39 -0.01 2.19 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.07 2.20 5.88 -2.39 -0.01 2.18 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -79.33 387.34 5.57 -73.75 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.26 Total: 21.75 kcal Atomic # 6 Polarization: 27.35 SS G_CDS: 8.54 Total: 35.89 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -4.96 Total: -113.07 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -0.30 Total: -61.20 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -79.33 5.57 -73.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184848731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.694 kcal (2) G-P(sol) polarization free energy of solvation -79.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds