Wall clock time and date at job start Tue Mar 31 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46983 * 2 1 4 4 C 1.53003 * 109.46967 * 240.00544 * 2 1 3 5 5 O 1.45197 * 109.47427 * 120.00253 * 2 1 3 6 6 C 1.34639 * 117.00008 * 60.00059 * 5 2 1 7 7 O 1.21516 * 119.99688 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99967 * 180.02562 * 6 5 2 9 9 C 1.46505 * 120.00038 * 359.97438 * 8 6 5 10 10 C 1.50699 * 109.47223 * 270.00541 * 9 8 6 11 11 H 1.08010 * 119.99898 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00218 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99973 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00288 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46916 * 59.99759 * 14 12 10 16 16 H 1.48498 * 109.46937 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46682 * 300.00082 * 14 12 10 18 18 C 1.46504 * 119.99913 * 179.97438 * 8 6 5 19 19 C 1.50699 * 109.46937 * 89.99612 * 18 8 6 20 20 O 1.21287 * 120.00296 * 0.02562 * 19 18 8 21 21 N 1.34774 * 120.00246 * 179.97438 * 19 18 8 22 22 C 1.46496 * 120.00754 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47421 * 180.02562 * 22 21 19 24 24 N 1.33251 * 125.52599 * 90.00274 * 23 22 21 25 25 C 1.30825 * 109.82850 * 179.97438 * 24 23 22 26 26 N 1.34434 * 108.08133 * 359.97438 * 25 24 23 27 27 H 0.96991 * 126.82624 * 179.73840 * 26 25 24 28 28 N 1.30709 * 125.53091 * 270.00035 * 23 22 21 29 29 H 1.09009 * 109.46890 * 300.00032 * 1 2 3 30 30 H 1.09000 * 109.47498 * 59.99425 * 1 2 3 31 31 H 1.08997 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46757 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47470 * 300.00033 * 3 2 1 34 34 H 1.08998 * 109.46977 * 60.00568 * 3 2 1 35 35 H 1.08997 * 109.46670 * 299.99931 * 4 2 1 36 36 H 1.09000 * 109.46986 * 59.99717 * 4 2 1 37 37 H 1.08996 * 109.47274 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.47103 * 30.00671 * 9 8 6 39 39 H 1.08997 * 109.46817 * 150.00509 * 9 8 6 40 40 H 0.96998 * 120.00351 * 180.02562 * 13 12 10 41 41 H 1.08995 * 109.46825 * 329.99615 * 18 8 6 42 42 H 1.08993 * 109.46746 * 209.99451 * 18 8 6 43 43 H 0.97006 * 119.99275 * 0.02562 * 21 19 18 44 44 H 1.08999 * 109.46774 * 59.99950 * 22 21 19 45 45 H 1.09001 * 109.47304 * 300.00519 * 22 21 19 46 46 H 1.08001 * 125.96388 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5094 0.5038 8 7 2.0673 -2.6655 2.4170 9 6 2.9125 -2.0177 3.4231 10 6 4.3624 -2.2061 3.0580 11 1 4.6278 -2.7540 2.1658 12 6 5.3502 -1.6800 3.8633 13 7 5.0271 -1.0134 4.9499 14 14 7.1474 -1.9142 3.4110 15 1 7.4066 -1.3057 2.0814 16 1 8.0041 -1.2585 4.4315 17 1 7.4602 -3.3650 3.3609 18 6 1.6733 -4.0667 2.5834 19 6 2.6982 -4.9577 1.9303 20 8 3.6631 -4.4703 1.3803 21 7 2.5432 -6.2962 1.9581 22 6 3.5392 -7.1624 1.3227 23 6 3.1339 -8.6037 1.4941 24 7 2.3713 -9.2990 0.6512 25 6 2.2140 -10.5185 1.0979 26 7 2.8864 -10.6283 2.2568 27 1 2.9493 -11.4154 2.8201 28 7 3.4735 -9.3746 2.4935 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2494 36 1 1.6765 -0.2072 -2.1392 37 1 3.1299 -0.7208 -1.2496 38 1 2.6825 -0.9529 3.4599 39 1 2.7227 -2.4644 4.3991 40 1 5.7219 -0.6429 5.5163 41 1 0.7013 -4.2285 2.1174 42 1 1.6108 -4.3027 3.6456 43 1 1.7717 -6.6860 2.3983 44 1 4.5115 -7.0002 1.7880 45 1 3.6011 -6.9266 0.2603 46 1 1.6434 -11.3007 0.6193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184861849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:45 Heat of formation + Delta-G solvation = -17.330635 kcal Electronic energy + Delta-G solvation = -30413.220103 eV Core-core repulsion = 26147.851556 eV Total energy + Delta-G solvation = -4265.368547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.41783 -40.12550 -39.03106 -36.74296 -35.01194 -34.54300 -33.27434 -32.68989 -32.34222 -31.58367 -28.88371 -27.10707 -26.99067 -26.92743 -25.89747 -23.08887 -22.90128 -21.48198 -20.71306 -20.10107 -18.75538 -18.55646 -17.15867 -16.91433 -16.36017 -16.09570 -15.90953 -15.57809 -15.25396 -15.10501 -14.66720 -14.42956 -14.23877 -13.88922 -13.52800 -13.33695 -12.92586 -12.87635 -12.54788 -12.40937 -12.17063 -12.07425 -11.79303 -11.51497 -11.43989 -11.43303 -11.18660 -11.04191 -10.84920 -10.66523 -10.55840 -10.53086 -10.36189 -10.16390 -9.98732 -9.85758 -9.71661 -9.29048 -8.99483 -8.72460 -8.30343 -7.77619 -5.92123 -3.92475 1.24566 2.31152 2.43403 2.93247 3.24253 3.44773 3.45938 3.51852 3.53861 3.76360 3.94209 4.37217 4.55587 4.65641 4.76004 5.17142 5.20093 5.27818 5.34546 5.42431 5.54905 5.65149 5.69797 5.74477 5.80338 5.88034 5.88748 6.02861 6.05572 6.08559 6.18445 6.27087 6.35845 6.58871 6.62150 6.67438 6.69071 6.82972 7.19504 7.39836 7.55820 7.75122 7.80885 8.09860 8.32397 8.35513 8.72576 9.16887 9.31261 9.72931 11.16734 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.003705 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.734907 B = 7554.742580 C = 9681.188522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.132 3.868 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.339 6.339 6 C 0.663 3.337 7 O -0.600 6.600 8 N -0.567 5.567 9 C 0.243 3.757 10 C -0.521 4.521 11 H 0.085 0.915 12 C 0.059 3.941 13 N -0.904 5.904 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.290 1.290 17 H -0.278 1.278 18 C 0.125 3.875 19 C 0.498 3.502 20 O -0.494 6.494 21 N -0.734 5.734 22 C 0.219 3.781 23 C 0.218 3.782 24 N -0.531 5.531 25 C 0.259 3.741 26 N -0.484 5.484 27 H 0.442 0.558 28 N -0.294 5.294 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.033 0.967 40 H 0.260 0.740 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.397 0.603 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 -13.642 -6.124 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.095 3.905 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.252 6.252 6 C 0.419 3.581 7 O -0.493 6.493 8 N -0.303 5.303 9 C 0.124 3.876 10 C -0.560 4.560 11 H 0.103 0.897 12 C -0.142 4.142 13 N -0.544 5.544 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.204 1.204 18 C -0.002 4.002 19 C 0.283 3.717 20 O -0.365 6.365 21 N -0.391 5.391 22 C 0.092 3.908 23 C -0.065 4.065 24 N -0.259 5.259 25 C -0.040 4.040 26 N -0.203 5.203 27 H 0.288 0.712 28 N -0.124 5.124 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.230 0.770 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.089 -12.783 -6.399 16.940 hybrid contribution 0.697 -1.283 0.348 1.501 sum -8.391 -14.066 -6.051 17.461 Atomic orbital electron populations 1.22500 0.94787 1.04731 1.01674 1.21910 0.93676 0.91683 0.83249 1.21806 1.02610 0.92923 1.02246 1.22466 1.01839 1.03300 0.96049 1.86491 1.70610 1.23648 1.44498 1.17847 0.78188 0.80545 0.81528 1.90772 1.43745 1.71027 1.43782 1.46725 1.52224 1.08813 1.22559 1.19506 0.89350 0.93595 0.85130 1.21873 0.90190 1.33850 1.10043 0.89734 1.24907 0.99026 0.95246 0.94980 1.69935 1.33202 1.36987 1.14310 0.86589 0.84774 0.78286 0.77935 1.20303 1.21628 1.20382 1.21017 0.96740 0.80746 1.01698 1.21377 0.88118 0.81544 0.80682 1.90752 1.30154 1.73722 1.41858 1.45842 1.26960 1.06083 1.60202 1.19313 0.92811 0.78388 1.00276 1.24325 0.95330 0.97974 0.88910 1.70489 1.20803 1.03429 1.31191 1.26175 0.95224 0.96495 0.86090 1.48214 1.39449 1.12384 1.20245 0.71196 1.78136 1.20689 0.90523 1.23079 0.92502 0.91952 0.89453 0.91320 0.90966 0.91652 0.89453 0.92129 0.92126 0.93625 0.94891 0.93024 0.87829 0.87457 0.76993 0.89013 0.88804 0.75965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 37.16 0.31 -2.46 16 2 C 0.13 2.33 1.13 -90.62 -0.10 2.22 16 3 C -0.14 -2.05 8.85 37.16 0.33 -1.72 16 4 C -0.18 -3.07 8.37 37.16 0.31 -2.76 16 5 O -0.34 -7.52 8.71 -40.32 -0.35 -7.87 16 6 C 0.66 14.92 7.70 54.05 0.42 15.34 16 7 O -0.60 -13.23 11.46 -19.28 -0.22 -13.45 16 8 N -0.57 -12.60 2.01 -182.25 -0.37 -12.96 16 9 C 0.24 6.21 5.21 -5.19 -0.03 6.18 16 10 C -0.52 -14.88 8.97 -34.44 -0.31 -15.19 16 11 H 0.08 2.56 5.50 -52.48 -0.29 2.27 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 14 Si 0.90 22.91 29.54 -169.99 -5.02 17.89 16 15 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 C 0.13 2.23 5.93 -5.19 -0.03 2.20 16 19 C 0.50 9.46 7.90 -10.99 -0.09 9.38 16 20 O -0.49 -11.77 13.76 5.55 0.08 -11.70 16 21 N -0.73 -10.84 5.55 -61.48 -0.34 -11.18 16 22 C 0.22 3.16 6.30 -5.20 -0.03 3.13 16 23 C 0.22 2.79 7.51 -156.85 -1.18 1.62 16 24 N -0.53 -6.13 11.19 -11.98 -0.13 -6.26 16 25 C 0.26 1.80 13.13 -90.65 -1.19 0.61 16 26 N -0.48 -3.53 7.45 29.53 0.22 -3.31 16 27 H 0.44 1.48 8.96 -182.34 -1.63 -0.16 16 28 N -0.29 -3.57 12.80 32.42 0.41 -3.15 16 29 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.51 5.88 -51.93 -0.31 1.21 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.70 5.88 -51.93 -0.31 1.39 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 39 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.10 1.62 7.42 -51.93 -0.39 1.24 16 42 H 0.11 1.62 7.89 -51.93 -0.41 1.21 16 43 H 0.40 4.77 8.46 -40.82 -0.35 4.43 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.22 0.35 8.06 -52.49 -0.42 -0.08 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -38.31 386.81 -8.67 -46.99 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.83 Total: 4.99 kcal Atomic # 6 Polarization: 21.84 SS G_CDS: -1.69 Total: 20.15 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.53 Total: -62.82 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.50 Total: -33.02 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.31 -8.67 -46.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184861849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.655 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds