Wall clock time and date at job start Tue Mar 31 2020 22:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46983 * 2 1 4 4 C 1.53003 * 109.46967 * 240.00544 * 2 1 3 5 5 O 1.45197 * 109.47427 * 120.00253 * 2 1 3 6 6 C 1.34639 * 117.00008 * 60.00059 * 5 2 1 7 7 O 1.21516 * 119.99688 * 359.97438 * 6 5 2 8 8 N 1.34771 * 119.99967 * 180.02562 * 6 5 2 9 9 C 1.46505 * 120.00038 * 359.97438 * 8 6 5 10 10 C 1.50699 * 109.47223 * 270.00541 * 9 8 6 11 11 H 1.08010 * 119.99898 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00218 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99973 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00288 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46916 * 59.99759 * 14 12 10 16 16 H 1.48498 * 109.46937 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46682 * 300.00082 * 14 12 10 18 18 C 1.46504 * 119.99913 * 179.97438 * 8 6 5 19 19 C 1.50699 * 109.46937 * 89.99612 * 18 8 6 20 20 O 1.21287 * 120.00296 * 0.02562 * 19 18 8 21 21 N 1.34774 * 120.00246 * 179.97438 * 19 18 8 22 22 C 1.46496 * 120.00754 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47421 * 180.02562 * 22 21 19 24 24 N 1.33251 * 125.52599 * 90.00274 * 23 22 21 25 25 C 1.30825 * 109.82850 * 179.97438 * 24 23 22 26 26 N 1.34434 * 108.08133 * 359.97438 * 25 24 23 27 27 H 0.96991 * 126.82624 * 179.73840 * 26 25 24 28 28 N 1.30709 * 125.53091 * 270.00035 * 23 22 21 29 29 H 1.09009 * 109.46890 * 300.00032 * 1 2 3 30 30 H 1.09000 * 109.47498 * 59.99425 * 1 2 3 31 31 H 1.08997 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46757 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47470 * 300.00033 * 3 2 1 34 34 H 1.08998 * 109.46977 * 60.00568 * 3 2 1 35 35 H 1.08997 * 109.46670 * 299.99931 * 4 2 1 36 36 H 1.09000 * 109.46986 * 59.99717 * 4 2 1 37 37 H 1.08996 * 109.47274 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.47103 * 30.00671 * 9 8 6 39 39 H 1.08997 * 109.46817 * 150.00509 * 9 8 6 40 40 H 0.96998 * 120.00351 * 180.02562 * 13 12 10 41 41 H 1.08995 * 109.46825 * 329.99615 * 18 8 6 42 42 H 1.08993 * 109.46746 * 209.99451 * 18 8 6 43 43 H 0.97006 * 119.99275 * 0.02562 * 21 19 18 44 44 H 1.08999 * 109.46774 * 59.99950 * 22 21 19 45 45 H 1.09001 * 109.47304 * 300.00519 * 22 21 19 46 46 H 1.08001 * 125.96388 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9509 -2.5094 0.5038 8 7 2.0673 -2.6655 2.4170 9 6 2.9125 -2.0177 3.4231 10 6 4.3624 -2.2061 3.0580 11 1 4.6278 -2.7540 2.1658 12 6 5.3502 -1.6800 3.8633 13 7 5.0271 -1.0134 4.9499 14 14 7.1474 -1.9142 3.4110 15 1 7.4066 -1.3057 2.0814 16 1 8.0041 -1.2585 4.4315 17 1 7.4602 -3.3650 3.3609 18 6 1.6733 -4.0667 2.5834 19 6 2.6982 -4.9577 1.9303 20 8 3.6631 -4.4703 1.3803 21 7 2.5432 -6.2962 1.9581 22 6 3.5392 -7.1624 1.3227 23 6 3.1339 -8.6037 1.4941 24 7 2.3713 -9.2990 0.6512 25 6 2.2140 -10.5185 1.0979 26 7 2.8864 -10.6283 2.2568 27 1 2.9493 -11.4154 2.8201 28 7 3.4735 -9.3746 2.4935 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7488 -1.2494 36 1 1.6765 -0.2072 -2.1392 37 1 3.1299 -0.7208 -1.2496 38 1 2.6825 -0.9529 3.4599 39 1 2.7227 -2.4644 4.3991 40 1 5.7219 -0.6429 5.5163 41 1 0.7013 -4.2285 2.1174 42 1 1.6108 -4.3027 3.6456 43 1 1.7717 -6.6860 2.3983 44 1 4.5115 -7.0002 1.7880 45 1 3.6011 -6.9266 0.2603 46 1 1.6434 -11.3007 0.6193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184861849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:45 Heat of formation + Delta-G solvation = -45.037183 kcal Electronic energy + Delta-G solvation = -30414.421549 eV Core-core repulsion = 26147.851556 eV Total energy + Delta-G solvation = -4266.569993 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.17787 -41.74914 -40.53350 -38.29896 -36.63065 -36.02709 -34.77460 -34.45081 -33.53757 -32.47309 -30.42009 -28.84497 -28.27567 -28.21324 -27.30148 -24.95737 -23.76796 -22.99494 -21.71572 -21.48389 -20.19619 -19.39094 -18.86638 -18.59538 -18.01657 -17.74878 -17.18063 -16.74576 -16.56988 -16.50090 -16.18793 -15.92559 -15.63759 -15.29883 -15.03768 -14.71068 -14.36779 -14.17566 -14.11999 -13.88555 -13.42049 -13.26685 -13.17793 -13.14936 -13.03777 -12.82359 -12.76646 -12.74084 -12.54835 -12.42159 -12.19757 -11.89805 -11.86798 -11.27693 -11.22405 -11.15726 -10.98813 -10.93660 -10.70049 -10.52256 -10.13161 -9.57361 -8.12923 -6.19185 0.49601 1.31498 1.37467 1.39188 1.48854 1.64134 1.73896 1.74910 1.98215 2.43928 2.50298 3.04292 3.13443 3.18700 3.58153 3.86386 3.89351 3.92608 4.05141 4.14991 4.20854 4.36651 4.49611 4.54643 4.62265 4.68321 4.79895 4.81474 4.82288 4.89741 4.94102 5.13423 5.15366 5.15529 5.25258 5.33168 5.37081 5.43620 5.64872 5.67541 5.88639 6.20038 6.22186 6.49053 6.55494 6.93562 7.01435 7.36013 7.44588 7.56882 8.94483 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.003705 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.734907 B = 7554.742580 C = 9681.188522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.114 3.886 3 C -0.134 4.134 4 C -0.173 4.173 5 O -0.367 6.367 6 C 0.657 3.343 7 O -0.600 6.600 8 N -0.573 5.573 9 C 0.261 3.739 10 C -0.529 4.529 11 H 0.065 0.935 12 C 0.017 3.983 13 N -0.926 5.926 14 Si 0.947 3.053 15 H -0.280 1.280 16 H -0.276 1.276 17 H -0.280 1.280 18 C 0.119 3.881 19 C 0.496 3.504 20 O -0.550 6.550 21 N -0.712 5.712 22 C 0.222 3.778 23 C 0.208 3.792 24 N -0.569 5.569 25 C 0.282 3.718 26 N -0.468 5.468 27 H 0.461 0.539 28 N -0.325 5.325 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.023 0.977 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.136 0.864 43 H 0.413 0.587 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 -14.988 -6.722 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.230 4.230 5 O -0.281 6.281 6 C 0.413 3.587 7 O -0.494 6.494 8 N -0.310 5.310 9 C 0.141 3.859 10 C -0.568 4.568 11 H 0.083 0.917 12 C -0.181 4.181 13 N -0.567 5.567 14 Si 0.774 3.226 15 H -0.206 1.206 16 H -0.201 1.201 17 H -0.206 1.206 18 C -0.006 4.006 19 C 0.282 3.718 20 O -0.426 6.426 21 N -0.369 5.369 22 C 0.095 3.905 23 C -0.075 4.075 24 N -0.298 5.298 25 C -0.016 4.016 26 N -0.189 5.189 27 H 0.310 0.690 28 N -0.157 5.157 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.249 0.751 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -10.464 -14.207 -6.974 18.973 hybrid contribution 1.032 -1.000 0.472 1.513 sum -9.432 -15.207 -6.502 19.039 Atomic orbital electron populations 1.22406 0.92914 1.03849 1.03539 1.22464 0.95360 0.92619 0.81845 1.21850 1.01633 0.91340 1.04231 1.22401 1.00601 1.02252 0.97730 1.86479 1.71253 1.23620 1.46747 1.18000 0.78279 0.80866 0.81542 1.90759 1.43857 1.71201 1.43573 1.46695 1.51829 1.10412 1.22018 1.19044 0.88451 0.92603 0.85814 1.22010 0.92020 1.33400 1.09341 0.91664 1.25530 1.02354 0.95156 0.95064 1.70003 1.34257 1.37569 1.14896 0.85789 0.81072 0.78019 0.77745 1.20628 1.20066 1.20559 1.21369 0.97190 0.78410 1.03677 1.21603 0.87521 0.82741 0.79955 1.90728 1.32389 1.74941 1.44551 1.45610 1.27273 1.04930 1.59042 1.19110 0.92043 0.80006 0.99293 1.23808 0.96622 0.97202 0.89914 1.70439 1.21881 1.05399 1.32105 1.27165 0.93446 0.95968 0.85015 1.48123 1.38483 1.11553 1.20708 0.68967 1.78021 1.21821 0.92386 1.23457 0.92163 0.88496 0.91621 0.92890 0.87014 0.91570 0.92115 0.88273 0.93950 0.95914 0.94948 0.92749 0.85381 0.84629 0.75136 0.90653 0.89867 0.70549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.99 8.37 71.98 0.60 -4.38 16 2 C 0.11 3.93 1.13 -10.79 -0.01 3.92 16 3 C -0.13 -3.77 8.85 71.98 0.64 -3.13 16 4 C -0.17 -5.87 8.37 71.98 0.60 -5.27 16 5 O -0.37 -16.69 8.71 -55.48 -0.48 -17.18 16 6 C 0.66 30.28 7.70 129.79 1.00 31.28 16 7 O -0.60 -26.87 11.46 19.79 0.23 -26.64 16 8 N -0.57 -26.04 2.01 -960.92 -1.94 -27.98 16 9 C 0.26 13.73 5.21 85.63 0.45 14.18 16 10 C -0.53 -31.11 8.97 25.60 0.23 -30.88 16 11 H 0.07 4.10 5.50 -2.91 -0.02 4.09 16 12 C 0.02 1.01 5.46 84.65 0.46 1.48 16 13 N -0.93 -55.25 13.29 21.45 0.28 -54.97 16 14 Si 0.95 47.75 29.54 68.60 2.03 49.78 16 15 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 18 C 0.12 4.24 5.93 85.63 0.51 4.75 16 19 C 0.50 19.29 7.90 87.66 0.69 19.99 16 20 O -0.55 -27.45 13.76 -3.05 -0.04 -27.49 16 21 N -0.71 -21.30 5.55 -466.80 -2.59 -23.89 16 22 C 0.22 6.68 6.30 85.63 0.54 7.22 16 23 C 0.21 5.26 7.51 138.63 1.04 6.31 16 24 N -0.57 -12.28 11.19 -191.80 -2.15 -14.43 16 25 C 0.28 3.02 13.13 180.36 2.37 5.38 16 26 N -0.47 -5.64 7.45 -60.49 -0.45 -6.09 16 27 H 0.46 1.71 8.96 -213.11 -1.91 -0.20 16 28 N -0.33 -7.59 12.80 -51.33 -0.66 -8.25 16 29 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 2.23 5.88 -2.39 -0.01 2.21 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.39 5.88 -2.39 -0.01 2.37 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.02 1.30 7.37 -2.39 -0.02 1.28 16 39 H 0.03 1.69 7.89 -2.39 -0.02 1.67 16 40 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.13 3.90 7.42 -2.39 -0.02 3.88 16 42 H 0.14 3.97 7.89 -2.39 -0.02 3.95 16 43 H 0.41 9.66 8.46 -92.70 -0.78 8.88 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 46 H 0.28 -0.57 8.06 -2.91 -0.02 -0.59 16 Total: -1.00 -86.98 386.81 1.69 -85.28 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -1.66 Total: 21.00 kcal Atomic # 6 Polarization: 41.72 SS G_CDS: 9.12 Total: 50.84 kcal Atomic # 7 Polarization: -128.10 SS G_CDS: -7.49 Total: -135.59 kcal Atomic # 8 Polarization: -71.01 SS G_CDS: -0.30 Total: -71.31 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -86.98 1.69 -85.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184861849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.248 kcal (2) G-P(sol) polarization free energy of solvation -86.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds