Wall clock time and date at job start Tue Mar 31 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 N 1.46903 * 109.47166 * 120.00544 * 2 1 3 5 5 C 1.46896 * 110.99643 * 274.19999 * 4 2 1 6 6 C 1.53003 * 109.47031 * 76.97483 * 5 4 2 7 7 C 1.53000 * 109.46988 * 173.33670 * 6 5 4 8 8 N 1.46506 * 109.47100 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99946 * 180.02562 * 8 7 6 10 10 O 1.21500 * 120.00290 * 359.97438 * 9 8 7 11 11 C 1.48280 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.47489 * 128.71603 * 179.97438 * 11 9 8 13 13 N 1.30641 * 102.71767 * 179.97438 * 12 11 9 14 14 O 1.20829 * 109.62111 * 0.02562 * 13 12 11 15 15 N 1.20904 * 115.91214 * 359.97438 * 14 13 12 16 16 C 1.46901 * 110.99970 * 150.24680 * 4 2 1 17 17 C 1.50702 * 109.46987 * 286.80151 * 16 4 2 18 18 O 1.21292 * 120.00050 * 1.38541 * 17 16 4 19 19 N 1.34778 * 119.99498 * 181.38802 * 17 16 4 20 20 C 1.37097 * 119.99632 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00097 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00330 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99532 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00541 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47128 * 89.99804 * 24 22 20 26 26 H 1.48498 * 109.47399 * 209.99943 * 24 22 20 27 27 H 1.48500 * 109.47173 * 330.00239 * 24 22 20 28 28 H 1.08995 * 109.47140 * 313.56933 * 1 2 3 29 29 H 1.09004 * 109.47357 * 73.56449 * 1 2 3 30 30 H 1.09002 * 109.47401 * 193.56427 * 1 2 3 31 31 H 1.09000 * 109.46990 * 240.00353 * 2 1 3 32 32 H 1.09007 * 109.46838 * 169.02324 * 3 2 1 33 33 H 1.08991 * 109.47755 * 289.02644 * 3 2 1 34 34 H 1.09000 * 109.46989 * 49.03067 * 3 2 1 35 35 H 1.08999 * 109.47354 * 316.97102 * 5 4 2 36 36 H 1.08999 * 109.46785 * 196.96955 * 5 4 2 37 37 H 1.08995 * 109.47291 * 53.33868 * 6 5 4 38 38 H 1.09001 * 109.47015 * 293.33438 * 6 5 4 39 39 H 1.09008 * 109.47129 * 60.00125 * 7 6 5 40 40 H 1.08994 * 109.47630 * 299.99455 * 7 6 5 41 41 H 0.97000 * 119.99468 * 0.02562 * 8 7 6 42 42 H 1.08005 * 128.63846 * 0.24013 * 12 11 9 43 43 H 1.08999 * 109.47311 * 46.80111 * 16 4 2 44 44 H 1.08998 * 109.46803 * 166.80248 * 16 4 2 45 45 H 0.96998 * 120.00290 * 359.97438 * 19 17 16 46 46 H 0.97000 * 119.99776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.1004 0.2269 2.3421 6 6 0.6977 0.4657 2.9047 7 6 0.7974 1.2873 4.1915 8 7 -0.5457 1.5164 4.7299 9 6 -0.7045 2.2225 5.8668 10 8 0.2662 2.6686 6.4455 11 6 -2.0639 2.4539 6.4120 12 6 -2.4570 3.1900 7.6282 13 7 -3.7587 3.0791 7.6233 14 8 -4.1079 2.4402 6.6590 15 7 -3.2222 2.0542 5.9320 16 6 3.3177 -1.3317 0.9451 17 6 3.1178 -2.5466 0.0761 18 8 2.0069 -2.8358 -0.3157 19 7 4.1734 -3.3116 -0.2657 20 6 3.9917 -4.4165 -1.0568 21 1 3.0025 -4.6741 -1.4057 22 6 5.0800 -5.2050 -1.4096 23 7 6.2836 -4.8914 -0.9855 24 14 4.8323 -6.7108 -2.4868 25 1 4.9648 -6.3252 -3.9148 26 1 5.8571 -7.7324 -2.1529 27 1 3.4781 -7.2721 -2.2493 28 1 -0.3633 0.7083 0.7446 29 1 -0.3634 0.2908 -0.9857 30 1 -0.3634 -0.9990 0.2410 31 1 1.8933 -0.5138 -0.8900 32 1 3.1123 1.4487 0.1957 33 1 1.8453 1.8968 -0.9714 34 1 1.5258 2.0096 0.7760 35 1 2.5274 1.1753 2.0159 36 1 2.7326 -0.2093 3.1154 37 1 0.2251 -0.4924 3.1211 38 1 0.1001 1.0085 2.1724 39 1 1.2701 2.2454 3.9752 40 1 1.3950 0.7445 4.9238 41 1 -1.3206 1.1599 4.2680 42 1 -1.8261 3.6982 8.3424 43 1 3.9767 -0.6269 0.4382 44 1 3.7663 -1.6322 1.8920 45 1 5.0618 -3.0801 0.0474 46 1 7.0434 -5.4416 -1.2321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267329176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:31 Heat of formation + Delta-G solvation = 57.880086 kcal Electronic energy + Delta-G solvation = -28756.228567 eV Core-core repulsion = 24494.121401 eV Total energy + Delta-G solvation = -4262.107166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.42750 -40.21775 -39.20376 -37.46355 -35.78645 -35.20927 -34.98419 -33.86367 -32.21208 -31.59633 -31.03151 -27.75432 -27.15080 -26.34094 -24.95804 -24.41986 -23.63996 -21.88525 -21.35621 -19.77646 -19.54065 -19.06902 -18.91876 -18.02243 -17.81076 -16.61513 -16.52657 -15.89966 -15.71488 -15.48391 -15.11849 -14.60022 -14.48971 -14.36704 -13.84396 -13.69452 -13.47547 -13.31157 -13.17100 -12.50922 -12.45215 -12.43277 -12.15377 -12.06063 -11.89277 -11.84600 -11.65672 -11.48506 -11.29681 -11.11119 -11.08326 -10.90045 -10.82833 -10.67159 -10.39127 -10.20533 -10.20306 -9.62668 -9.47004 -8.44786 -7.94552 -7.85519 -6.40337 -3.80891 0.22600 0.81660 2.12476 2.43329 2.89596 2.98090 3.18111 3.26677 3.32443 3.42881 3.88245 3.95709 4.22936 4.23813 4.30780 4.70765 4.80135 4.84096 4.99259 5.02490 5.17525 5.21857 5.26688 5.37248 5.38179 5.49509 5.58456 5.67003 5.74332 5.81619 5.87061 5.91630 5.96416 6.03548 6.09335 6.18121 6.30668 6.48180 6.65120 6.81034 7.31017 7.41423 7.44824 7.56303 7.88501 8.08155 8.64022 9.20135 9.56965 10.09129 10.77538 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001751 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.849807 B =15988.064121 C =16060.800532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 C -0.181 4.181 4 N -0.509 5.509 5 C 0.049 3.951 6 C -0.135 4.135 7 C 0.118 3.882 8 N -0.705 5.705 9 C 0.605 3.395 10 O -0.513 6.513 11 C -0.042 4.042 12 C 0.038 3.962 13 N -0.353 5.353 14 O 0.344 5.656 15 N -0.319 5.319 16 C 0.045 3.955 17 C 0.445 3.555 18 O -0.575 6.575 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.410 0.590 42 H 0.228 0.772 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 17.697 13.254 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.240 4.240 4 N -0.232 5.232 5 C -0.080 4.080 6 C -0.173 4.173 7 C -0.005 4.005 8 N -0.357 5.357 9 C 0.386 3.614 10 O -0.387 6.387 11 C -0.208 4.208 12 C -0.148 4.148 13 N -0.076 5.076 14 O 0.117 5.883 15 N -0.039 5.039 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.458 6.458 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.195 1.195 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.245 0.755 42 H 0.245 0.755 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.792 17.063 13.199 25.604 hybrid contribution 1.759 0.017 -0.505 1.830 sum -12.033 17.080 12.695 24.447 Atomic orbital electron populations 1.21945 0.94611 1.02616 1.00294 1.21661 0.96117 0.91242 0.93628 1.22501 1.00957 0.98638 1.01886 1.61702 1.26406 1.30556 1.04551 1.22140 0.95895 0.96196 0.93776 1.22054 0.99200 1.00972 0.95043 1.21553 0.82073 1.00830 0.96022 1.45872 1.11289 1.53799 1.24739 1.16440 0.84378 0.79362 0.81183 1.90866 1.38371 1.50197 1.59228 1.26284 0.94970 1.02745 0.96797 1.27773 0.90005 0.99332 0.97664 1.75097 1.15122 1.11003 1.06344 1.85105 1.32146 1.47707 1.23333 1.75411 0.97730 1.14908 1.15869 1.21904 0.90226 0.96071 1.00447 1.19773 0.85687 0.85982 0.85588 1.90516 1.24122 1.73082 1.58090 1.41874 1.08509 1.24421 1.45676 1.19679 0.95834 1.01754 1.25379 0.87984 1.25246 0.94718 0.99582 0.98486 1.69613 0.98854 1.40129 1.45865 0.85872 0.78162 0.80632 0.79706 1.20491 1.20968 1.19454 0.93188 0.93255 0.91044 0.89501 0.92819 0.92369 0.92362 0.93163 0.90947 0.89889 0.90167 0.90831 0.90557 0.75463 0.75536 0.93326 0.89542 0.77583 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.81 37.16 0.33 -1.47 16 2 C 0.08 1.18 2.24 -67.71 -0.15 1.03 16 3 C -0.18 -2.05 7.76 37.16 0.29 -1.76 16 4 N -0.51 -7.61 3.95 -228.09 -0.90 -8.51 16 5 C 0.05 0.53 4.50 -3.82 -0.02 0.52 16 6 C -0.13 -1.22 4.72 -26.73 -0.13 -1.35 16 7 C 0.12 0.97 5.67 -4.04 -0.02 0.94 16 8 N -0.71 -5.61 5.55 -61.11 -0.34 -5.95 16 9 C 0.60 5.58 7.85 -12.13 -0.10 5.49 16 10 O -0.51 -6.08 17.05 5.37 0.09 -5.99 16 11 C -0.04 -0.33 7.56 -80.07 -0.61 -0.94 16 12 C 0.04 0.24 12.63 -14.29 -0.18 0.06 16 13 N -0.35 -2.61 12.22 30.71 0.38 -2.23 16 14 O 0.34 2.62 11.65 27.27 0.32 2.93 16 15 N -0.32 -2.54 12.13 33.49 0.41 -2.13 16 16 C 0.04 0.76 5.37 -4.97 -0.03 0.73 16 17 C 0.44 10.19 7.29 -10.98 -0.08 10.11 16 18 O -0.57 -15.05 14.85 5.55 0.08 -14.97 16 19 N -0.57 -14.15 5.29 -10.96 -0.06 -14.21 16 20 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 21 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.05 0.53 5.00 -51.93 -0.26 0.27 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.57 6.65 -51.93 -0.35 1.22 16 32 H 0.05 0.61 7.13 -51.92 -0.37 0.24 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.57 6.17 -51.93 -0.32 0.25 16 35 H 0.05 0.50 5.14 -51.93 -0.27 0.24 16 36 H 0.07 0.76 7.60 -51.93 -0.39 0.37 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.70 4.59 -51.93 -0.24 0.46 16 39 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.41 2.75 8.33 -40.82 -0.34 2.41 16 42 H 0.23 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.05 0.76 7.51 -51.93 -0.39 0.37 16 44 H 0.09 1.32 7.64 -51.93 -0.40 0.93 16 45 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 46 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -32.18 382.22 -5.61 -37.79 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.11 Total: 9.78 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.93 Total: 5.49 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.21 Total: -56.76 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.49 Total: -18.02 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.18 -5.61 -37.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267329176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.670 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds