Wall clock time and date at job start Tue Mar 31 2020 22:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 N 1.46903 * 109.47166 * 120.00544 * 2 1 3 5 5 C 1.46896 * 110.99643 * 274.19999 * 4 2 1 6 6 C 1.53003 * 109.47031 * 76.97483 * 5 4 2 7 7 C 1.53000 * 109.46988 * 173.33670 * 6 5 4 8 8 N 1.46506 * 109.47100 * 179.97438 * 7 6 5 9 9 C 1.34770 * 119.99946 * 180.02562 * 8 7 6 10 10 O 1.21500 * 120.00290 * 359.97438 * 9 8 7 11 11 C 1.48280 * 119.99960 * 180.02562 * 9 8 7 12 12 C 1.47489 * 128.71603 * 179.97438 * 11 9 8 13 13 N 1.30641 * 102.71767 * 179.97438 * 12 11 9 14 14 O 1.20829 * 109.62111 * 0.02562 * 13 12 11 15 15 N 1.20904 * 115.91214 * 359.97438 * 14 13 12 16 16 C 1.46901 * 110.99970 * 150.24680 * 4 2 1 17 17 C 1.50702 * 109.46987 * 286.80151 * 16 4 2 18 18 O 1.21292 * 120.00050 * 1.38541 * 17 16 4 19 19 N 1.34778 * 119.99498 * 181.38802 * 17 16 4 20 20 C 1.37097 * 119.99632 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00097 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00330 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99532 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00541 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47128 * 89.99804 * 24 22 20 26 26 H 1.48498 * 109.47399 * 209.99943 * 24 22 20 27 27 H 1.48500 * 109.47173 * 330.00239 * 24 22 20 28 28 H 1.08995 * 109.47140 * 313.56933 * 1 2 3 29 29 H 1.09004 * 109.47357 * 73.56449 * 1 2 3 30 30 H 1.09002 * 109.47401 * 193.56427 * 1 2 3 31 31 H 1.09000 * 109.46990 * 240.00353 * 2 1 3 32 32 H 1.09007 * 109.46838 * 169.02324 * 3 2 1 33 33 H 1.08991 * 109.47755 * 289.02644 * 3 2 1 34 34 H 1.09000 * 109.46989 * 49.03067 * 3 2 1 35 35 H 1.08999 * 109.47354 * 316.97102 * 5 4 2 36 36 H 1.08999 * 109.46785 * 196.96955 * 5 4 2 37 37 H 1.08995 * 109.47291 * 53.33868 * 6 5 4 38 38 H 1.09001 * 109.47015 * 293.33438 * 6 5 4 39 39 H 1.09008 * 109.47129 * 60.00125 * 7 6 5 40 40 H 1.08994 * 109.47630 * 299.99455 * 7 6 5 41 41 H 0.97000 * 119.99468 * 0.02562 * 8 7 6 42 42 H 1.08005 * 128.63846 * 0.24013 * 12 11 9 43 43 H 1.08999 * 109.47311 * 46.80111 * 16 4 2 44 44 H 1.08998 * 109.46803 * 166.80248 * 16 4 2 45 45 H 0.96998 * 120.00290 * 359.97438 * 19 17 16 46 46 H 0.97000 * 119.99776 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.1004 0.2269 2.3421 6 6 0.6977 0.4657 2.9047 7 6 0.7974 1.2873 4.1915 8 7 -0.5457 1.5164 4.7299 9 6 -0.7045 2.2225 5.8668 10 8 0.2662 2.6686 6.4455 11 6 -2.0639 2.4539 6.4120 12 6 -2.4570 3.1900 7.6282 13 7 -3.7587 3.0791 7.6233 14 8 -4.1079 2.4402 6.6590 15 7 -3.2222 2.0542 5.9320 16 6 3.3177 -1.3317 0.9451 17 6 3.1178 -2.5466 0.0761 18 8 2.0069 -2.8358 -0.3157 19 7 4.1734 -3.3116 -0.2657 20 6 3.9917 -4.4165 -1.0568 21 1 3.0025 -4.6741 -1.4057 22 6 5.0800 -5.2050 -1.4096 23 7 6.2836 -4.8914 -0.9855 24 14 4.8323 -6.7108 -2.4868 25 1 4.9648 -6.3252 -3.9148 26 1 5.8571 -7.7324 -2.1529 27 1 3.4781 -7.2721 -2.2493 28 1 -0.3633 0.7083 0.7446 29 1 -0.3634 0.2908 -0.9857 30 1 -0.3634 -0.9990 0.2410 31 1 1.8933 -0.5138 -0.8900 32 1 3.1123 1.4487 0.1957 33 1 1.8453 1.8968 -0.9714 34 1 1.5258 2.0096 0.7760 35 1 2.5274 1.1753 2.0159 36 1 2.7326 -0.2093 3.1154 37 1 0.2251 -0.4924 3.1211 38 1 0.1001 1.0085 2.1724 39 1 1.2701 2.2454 3.9752 40 1 1.3950 0.7445 4.9238 41 1 -1.3206 1.1599 4.2680 42 1 -1.8261 3.6982 8.3424 43 1 3.9767 -0.6269 0.4382 44 1 3.7663 -1.6322 1.8920 45 1 5.0618 -3.0801 0.0474 46 1 7.0434 -5.4416 -1.2321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267329176.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:31 Heat of formation + Delta-G solvation = 33.002766 kcal Electronic energy + Delta-G solvation = -28757.307329 eV Core-core repulsion = 24494.121401 eV Total energy + Delta-G solvation = -4263.185927 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.98605 -40.97353 -40.55879 -39.01107 -36.57087 -35.88280 -35.76518 -35.55464 -33.35253 -33.04523 -32.48224 -28.83256 -28.11217 -27.48726 -26.17390 -25.24779 -24.76705 -22.71381 -22.05641 -21.20331 -20.41148 -20.10616 -19.80285 -19.61133 -18.61613 -17.70590 -17.53191 -17.16861 -16.60636 -16.49984 -16.43152 -15.93738 -15.74846 -15.38973 -15.16189 -14.98960 -14.71497 -14.30576 -13.90437 -13.89935 -13.49847 -13.42585 -13.31815 -13.03538 -12.99641 -12.94707 -12.72079 -12.65283 -12.43909 -12.39713 -12.16477 -12.12332 -11.95332 -11.87867 -11.68872 -11.63728 -11.44401 -11.16364 -10.31174 -10.25698 -9.96629 -9.06770 -8.44218 -5.92243 -0.38812 0.30243 1.38159 1.41419 1.48289 1.54063 1.75814 2.11440 2.28702 2.32711 2.44474 2.76166 2.91708 3.22916 3.45843 3.67863 3.72650 3.90613 3.96056 4.15938 4.20864 4.28186 4.36532 4.43357 4.45895 4.52315 4.56769 4.59477 4.68887 4.77257 4.82071 4.90011 5.00916 5.03917 5.11748 5.17910 5.28571 5.42798 5.50136 5.57515 5.96202 6.15412 6.18621 6.36583 6.64734 6.77856 7.16730 7.32199 7.61623 8.18119 8.73241 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021787 B = 0.001751 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.849807 B =15988.064121 C =16060.800532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.080 3.920 3 C -0.172 4.172 4 N -0.528 5.528 5 C 0.047 3.953 6 C -0.122 4.122 7 C 0.125 3.875 8 N -0.699 5.699 9 C 0.607 3.393 10 O -0.541 6.541 11 C -0.053 4.053 12 C 0.052 3.948 13 N -0.363 5.363 14 O 0.341 5.659 15 N -0.323 5.323 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.612 6.612 19 N -0.579 5.579 20 C -0.329 4.329 21 H 0.077 0.923 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.416 0.584 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.395 0.605 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.472 19.169 14.189 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 C -0.230 4.230 4 N -0.252 5.252 5 C -0.081 4.081 6 C -0.160 4.160 7 C 0.002 3.998 8 N -0.350 5.350 9 C 0.390 3.610 10 O -0.417 6.417 11 C -0.218 4.218 12 C -0.134 4.134 13 N -0.088 5.088 14 O 0.115 5.885 15 N -0.042 5.042 16 C -0.074 4.074 17 C 0.230 3.770 18 O -0.497 6.497 19 N -0.217 5.217 20 C -0.458 4.458 21 H 0.095 0.905 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.272 0.728 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.228 0.772 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.769 18.541 14.122 27.070 hybrid contribution 1.689 -0.413 -0.775 1.903 sum -12.080 18.128 13.347 25.548 Atomic orbital electron populations 1.21892 0.93811 1.01594 1.01555 1.21605 0.96781 0.92700 0.91765 1.22405 1.01132 0.96360 1.03152 1.61653 1.25307 1.32340 1.05853 1.22257 0.97293 0.96147 0.92383 1.21888 0.98042 1.00571 0.95514 1.21455 0.82125 1.00911 0.95305 1.45841 1.11562 1.53222 1.24421 1.16512 0.84466 0.78959 0.81078 1.90851 1.39298 1.51497 1.60068 1.26209 0.94431 1.03589 0.97613 1.28253 0.89748 0.98171 0.97200 1.75111 1.15700 1.11512 1.06458 1.85106 1.32070 1.47863 1.23452 1.75392 0.97881 1.14864 1.16055 1.21744 0.91860 0.93734 1.00025 1.20889 0.84529 0.86793 0.84826 1.90486 1.25579 1.74313 1.59343 1.41955 1.09211 1.24496 1.46084 1.19621 0.95252 1.03690 1.27284 0.90480 1.26000 0.94261 1.01873 0.99300 1.69674 0.99291 1.41042 1.46326 0.84956 0.77980 0.77392 0.78183 1.19725 1.19625 1.19899 0.90175 0.92777 0.94152 0.94059 0.92662 0.91794 0.90005 0.91327 0.90220 0.91169 0.89554 0.90046 0.90882 0.74713 0.72820 0.91590 0.87470 0.77167 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.81 71.98 0.63 -2.72 16 2 C 0.08 2.26 2.24 44.91 0.10 2.36 16 3 C -0.17 -3.47 7.76 71.98 0.56 -2.92 16 4 N -0.53 -15.29 3.95 -875.53 -3.46 -18.75 16 5 C 0.05 0.91 4.50 86.30 0.39 1.30 16 6 C -0.12 -1.93 4.72 30.60 0.14 -1.79 16 7 C 0.13 1.75 5.67 86.38 0.49 2.24 16 8 N -0.70 -9.80 5.55 -465.55 -2.59 -12.38 16 9 C 0.61 10.24 7.85 86.92 0.68 10.92 16 10 O -0.54 -11.97 17.05 -3.72 -0.06 -12.04 16 11 C -0.05 -0.76 7.56 44.29 0.34 -0.43 16 12 C 0.05 0.56 12.63 87.31 1.10 1.66 16 13 N -0.36 -4.85 12.22 -61.46 -0.75 -5.60 16 14 O 0.34 4.82 11.65 140.86 1.64 6.46 16 15 N -0.32 -4.74 12.13 -52.05 -0.63 -5.37 16 16 C 0.06 1.91 5.37 85.56 0.46 2.37 16 17 C 0.44 20.78 7.29 87.66 0.64 21.42 16 18 O -0.61 -33.38 14.85 -3.07 -0.05 -33.42 16 19 N -0.58 -29.67 5.29 -306.98 -1.62 -31.29 16 20 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16 23 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 24 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H 0.08 1.52 5.00 -2.39 -0.01 1.50 16 29 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.54 6.65 -2.39 -0.02 1.52 16 32 H 0.05 1.11 7.13 -2.38 -0.02 1.09 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.27 6.17 -2.39 -0.01 1.26 16 35 H 0.07 1.12 5.14 -2.39 -0.01 1.11 16 36 H 0.08 1.46 7.60 -2.39 -0.02 1.44 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.25 4.59 -2.39 -0.01 1.24 16 39 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.42 4.84 8.33 -92.71 -0.77 4.07 16 42 H 0.26 1.00 8.06 -2.91 -0.02 0.98 16 43 H 0.07 1.97 7.51 -2.39 -0.02 1.95 16 44 H 0.11 3.11 7.64 -2.39 -0.02 3.09 16 45 H 0.39 19.23 7.90 -92.71 -0.73 18.50 16 46 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -71.51 382.22 1.15 -70.36 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.45 Total: 30.23 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 6.81 Total: 16.18 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -8.77 Total: -123.04 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: 1.53 Total: -39.00 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.51 1.15 -70.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267329176.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.361 kcal (2) G-P(sol) polarization free energy of solvation -71.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds