Wall clock time and date at job start Tue Mar 31 2020 22:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47068 * 2 1 4 4 C 1.38627 * 120.47371 * 101.77074 * 3 2 1 5 5 C 1.38579 * 118.49218 * 180.02562 * 4 3 2 6 6 C 1.38602 * 119.35232 * 359.97438 * 5 4 3 7 7 N 1.31497 * 120.89897 * 0.02562 * 6 5 4 8 8 C 1.32746 * 121.64560 * 359.97438 * 7 6 5 9 9 C 1.48165 * 119.72618 * 179.72220 * 8 7 6 10 10 O 1.21519 * 119.99963 * 175.00509 * 9 8 7 11 11 N 1.34769 * 119.99858 * 355.00175 * 9 8 7 12 12 C 1.46506 * 120.00281 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47590 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46682 * 64.99766 * 13 12 11 15 15 N 1.46497 * 109.47084 * 305.00636 * 13 12 11 16 16 C 1.36935 * 120.00387 * 154.99960 * 15 13 12 17 17 H 1.08009 * 119.99619 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00462 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00125 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47381 * 60.00137 * 20 18 16 22 22 H 1.48500 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47153 * 300.00144 * 20 18 16 24 24 C 1.50697 * 109.47349 * 184.99946 * 13 12 11 25 25 C 1.38235 * 119.99725 * 79.72828 * 24 13 12 26 26 C 1.38237 * 119.99847 * 179.78943 * 25 24 13 27 27 C 1.38229 * 119.99972 * 0.44003 * 26 25 24 28 28 C 1.38234 * 119.99986 * 359.81190 * 27 26 25 29 29 C 1.38228 * 120.00039 * 260.00157 * 24 13 12 30 30 H 1.09008 * 109.46862 * 60.00384 * 1 2 3 31 31 H 1.08995 * 109.46573 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47469 * 300.00663 * 1 2 3 33 33 H 1.08996 * 109.47694 * 239.99821 * 2 1 3 34 34 H 1.09004 * 109.47119 * 119.99191 * 2 1 3 35 35 H 1.08005 * 120.75502 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.32422 * 179.97438 * 5 4 3 37 37 H 1.07996 * 119.55367 * 180.02562 * 6 5 4 38 38 H 0.97003 * 120.00417 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.46927 * 300.00651 * 12 11 9 40 40 H 1.09000 * 109.46890 * 59.99979 * 12 11 9 41 41 H 0.97005 * 119.99900 * 334.99065 * 15 13 12 42 42 H 0.96993 * 120.00333 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.00074 * 359.97438 * 25 24 13 44 44 H 1.08007 * 119.99974 * 180.27411 * 26 25 24 45 45 H 1.08002 * 119.99933 * 179.83646 * 27 26 25 46 46 H 1.08005 * 119.99917 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00556 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4965 2.0025 1.1696 5 6 2.9484 3.3117 1.1229 6 6 2.9241 3.9961 -0.0821 7 7 2.4785 3.4201 -1.1770 8 6 2.0368 2.1683 -1.1752 9 6 1.5383 1.5633 -2.4325 10 8 1.2182 0.3913 -2.4576 11 7 1.4399 2.3128 -3.5482 12 6 0.9475 1.7145 -4.7916 13 6 0.9349 2.7725 -5.8967 14 1 1.9567 3.0851 -6.1120 15 7 0.1528 3.9301 -5.4557 16 6 0.3948 5.1655 -5.9945 17 1 1.1626 5.2865 -6.7445 18 6 -0.3465 6.2622 -5.5770 19 7 -1.2825 6.1147 -4.6635 20 14 -0.0158 7.9475 -6.3116 21 1 -0.2400 7.9007 -7.7789 22 1 -0.9343 8.9423 -5.7017 23 1 1.3901 8.3397 -6.0380 24 6 0.3145 2.1917 -7.1412 25 6 -1.0606 2.1027 -7.2510 26 6 -1.6299 1.5739 -8.3944 27 6 -0.8238 1.1257 -9.4240 28 6 0.5514 1.2099 -9.3120 29 6 1.1206 1.7427 -8.1704 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.5049 1.4481 2.0965 36 1 3.3160 3.7939 2.0166 37 1 3.2759 5.0164 -0.1224 38 1 1.6957 3.2483 -3.5283 39 1 1.6014 0.8927 -5.0832 40 1 -0.0635 1.3373 -4.6377 41 1 -0.5366 3.8214 -4.7819 42 1 -1.8003 6.8811 -4.3714 43 1 -1.6903 2.4491 -6.4448 44 1 -2.7044 1.5085 -8.4821 45 1 -1.2685 0.7102 -10.3162 46 1 1.1812 0.8594 -10.1163 47 1 2.1950 1.8085 -8.0830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267363060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:25 Heat of formation + Delta-G solvation = 36.163542 kcal Electronic energy + Delta-G solvation = -28935.217118 eV Core-core repulsion = 25083.017516 eV Total energy + Delta-G solvation = -3852.199603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72591 -39.08312 -38.47676 -35.99873 -34.65941 -33.36367 -32.34783 -31.79406 -30.39260 -29.84322 -29.52214 -27.52994 -24.89899 -24.12112 -23.56421 -22.69955 -21.91271 -21.37085 -20.41035 -19.92480 -17.96390 -17.24647 -16.73618 -16.33628 -15.80710 -15.42024 -15.26044 -15.03209 -14.64207 -14.54986 -14.13512 -13.89622 -13.86952 -13.43302 -13.27015 -13.17138 -12.90369 -12.80464 -12.77405 -12.65105 -12.28948 -12.01129 -11.94380 -11.36834 -11.12530 -10.95912 -10.88251 -10.80952 -10.67114 -10.43870 -10.14291 -9.89419 -9.80567 -9.75165 -9.26347 -9.05011 -9.00607 -8.56313 -8.38651 -8.16828 -7.08649 -5.81622 -3.12748 0.69438 1.18653 1.88239 1.94653 2.94840 3.41484 3.44883 3.47143 3.47781 3.93836 4.26668 4.33625 4.54781 4.67974 4.72671 4.87107 4.94195 5.25709 5.27780 5.36296 5.40687 5.44008 5.47864 5.51656 5.54151 5.58953 5.62810 5.77390 5.81811 5.89831 5.93177 6.01072 6.05583 6.06092 6.11606 6.27398 6.34860 6.43929 6.44910 6.51301 6.60863 6.65606 6.86692 6.95865 7.04302 7.30968 7.54857 7.67439 7.71153 8.04395 8.34104 8.53757 9.47168 9.96984 10.33489 11.39790 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008886 B = 0.003827 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.369990 B = 7314.289642 C = 9614.208815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.074 4.074 4 C -0.089 4.089 5 C -0.151 4.151 6 C 0.092 3.908 7 N -0.446 5.446 8 C 0.081 3.919 9 C 0.565 3.435 10 O -0.539 6.539 11 N -0.690 5.690 12 C 0.119 3.881 13 C 0.198 3.802 14 H 0.066 0.934 15 N -0.712 5.712 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.004 4.004 19 N -0.928 5.928 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.285 1.285 24 C -0.080 4.080 25 C -0.083 4.083 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.162 0.838 38 H 0.421 0.579 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.123 0.877 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.933 -10.731 7.338 14.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 C -0.077 4.077 4 C -0.115 4.115 5 C -0.171 4.171 6 C -0.068 4.068 7 N -0.156 5.156 8 C -0.057 4.057 9 C 0.350 3.650 10 O -0.417 6.417 11 N -0.341 5.341 12 C -0.005 4.005 13 C 0.086 3.914 14 H 0.084 0.916 15 N -0.353 5.353 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.212 1.212 24 C -0.084 4.084 25 C -0.102 4.102 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.179 0.821 38 H 0.260 0.740 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.721 -10.901 6.414 14.323 hybrid contribution -0.051 1.268 0.548 1.382 sum 6.670 -9.633 6.962 13.629 Atomic orbital electron populations 1.21625 0.94187 1.01773 1.01729 1.20757 0.96944 0.91008 1.03693 1.20955 0.96262 0.97975 0.92538 1.21505 0.96963 0.95097 0.97890 1.22346 0.99733 0.95289 0.99755 1.22813 0.96067 1.00224 0.87660 1.67630 1.07478 1.09406 1.31094 1.21090 0.99856 0.90703 0.94060 1.17837 0.78575 0.85755 0.82861 1.90690 1.50629 1.15683 1.84724 1.45877 1.63713 1.15663 1.08890 1.21645 0.99682 0.95763 0.83410 1.19475 0.95763 0.87375 0.88743 0.91644 1.42422 1.42387 1.02666 1.47812 1.19124 1.15582 0.84797 1.17828 0.91177 1.24702 0.98399 0.97912 0.99096 1.69644 1.24805 1.30091 1.32995 0.86306 0.77343 0.84206 0.78526 1.21305 1.21766 1.21181 1.20978 0.94125 0.95758 0.97503 1.21006 0.94964 0.96501 0.97685 1.21102 0.99298 0.99856 0.94322 1.20974 0.93912 1.01726 0.98685 1.20981 0.94916 1.01110 0.97810 1.21011 0.99349 0.99619 0.93939 0.91713 0.92438 0.93800 0.87498 0.92094 0.84469 0.84470 0.82123 0.74011 0.91329 0.91378 0.77854 0.93411 0.85927 0.86885 0.87122 0.87021 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.41 37.16 0.35 -1.37 16 2 C -0.09 -1.06 5.35 -27.88 -0.15 -1.21 16 3 C -0.07 -0.98 5.19 -104.09 -0.54 -1.52 16 4 C -0.09 -0.93 9.81 -39.31 -0.39 -1.32 16 5 C -0.15 -1.50 10.11 -39.32 -0.40 -1.89 16 6 C 0.09 1.13 11.18 -17.56 -0.20 0.94 16 7 N -0.45 -7.01 9.55 -9.80 -0.09 -7.11 16 8 C 0.08 1.29 6.74 -83.01 -0.56 0.73 16 9 C 0.56 9.77 7.38 -12.19 -0.09 9.68 16 10 O -0.54 -9.64 11.76 5.35 0.06 -9.58 16 11 N -0.69 -12.18 5.38 -61.15 -0.33 -12.51 16 12 C 0.12 2.05 5.21 -4.04 -0.02 2.03 16 13 C 0.20 3.72 2.64 -69.09 -0.18 3.54 16 14 H 0.07 1.24 7.94 -51.93 -0.41 0.82 16 15 N -0.71 -16.40 3.81 -54.55 -0.21 -16.60 16 16 C -0.24 -6.34 9.92 -15.06 -0.15 -6.49 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 19 N -0.93 -26.88 13.06 55.49 0.72 -26.15 16 20 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.08 -1.45 4.92 -104.63 -0.51 -1.96 16 25 C -0.08 -1.54 9.32 -39.58 -0.37 -1.91 16 26 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 27 C -0.13 -2.01 10.05 -39.59 -0.40 -2.40 16 28 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 29 C -0.12 -1.95 9.67 -39.58 -0.38 -2.33 16 30 H 0.06 1.00 6.44 -51.92 -0.33 0.66 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.11 1.50 5.92 -51.93 -0.31 1.19 16 34 H 0.06 0.59 8.02 -51.93 -0.42 0.17 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 38 H 0.42 7.99 7.48 -40.82 -0.31 7.69 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.39 9.67 7.80 -40.82 -0.32 9.35 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.12 2.43 7.73 -52.48 -0.41 2.03 16 44 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 47 H 0.11 1.63 8.04 -52.49 -0.42 1.21 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -30.28 393.37 -10.51 -40.79 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -6.70 Total: 18.85 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -4.88 Total: -10.53 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.09 Total: -62.38 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.58 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.28 -10.51 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267363060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.958 kcal (2) G-P(sol) polarization free energy of solvation -30.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds