Wall clock time and date at job start Tue Mar 31 2020 22:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.47068 * 2 1 4 4 C 1.38627 * 120.47371 * 101.77074 * 3 2 1 5 5 C 1.38579 * 118.49218 * 180.02562 * 4 3 2 6 6 C 1.38602 * 119.35232 * 359.97438 * 5 4 3 7 7 N 1.31497 * 120.89897 * 0.02562 * 6 5 4 8 8 C 1.32746 * 121.64560 * 359.97438 * 7 6 5 9 9 C 1.48165 * 119.72618 * 179.72220 * 8 7 6 10 10 O 1.21519 * 119.99963 * 175.00509 * 9 8 7 11 11 N 1.34769 * 119.99858 * 355.00175 * 9 8 7 12 12 C 1.46506 * 120.00281 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47590 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.46682 * 64.99766 * 13 12 11 15 15 N 1.46497 * 109.47084 * 305.00636 * 13 12 11 16 16 C 1.36935 * 120.00387 * 154.99960 * 15 13 12 17 17 H 1.08009 * 119.99619 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00462 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99900 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00125 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47381 * 60.00137 * 20 18 16 22 22 H 1.48500 * 109.47325 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47153 * 300.00144 * 20 18 16 24 24 C 1.50697 * 109.47349 * 184.99946 * 13 12 11 25 25 C 1.38235 * 119.99725 * 79.72828 * 24 13 12 26 26 C 1.38237 * 119.99847 * 179.78943 * 25 24 13 27 27 C 1.38229 * 119.99972 * 0.44003 * 26 25 24 28 28 C 1.38234 * 119.99986 * 359.81190 * 27 26 25 29 29 C 1.38228 * 120.00039 * 260.00157 * 24 13 12 30 30 H 1.09008 * 109.46862 * 60.00384 * 1 2 3 31 31 H 1.08995 * 109.46573 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47469 * 300.00663 * 1 2 3 33 33 H 1.08996 * 109.47694 * 239.99821 * 2 1 3 34 34 H 1.09004 * 109.47119 * 119.99191 * 2 1 3 35 35 H 1.08005 * 120.75502 * 359.97438 * 4 3 2 36 36 H 1.07999 * 120.32422 * 179.97438 * 5 4 3 37 37 H 1.07996 * 119.55367 * 180.02562 * 6 5 4 38 38 H 0.97003 * 120.00417 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.46927 * 300.00651 * 12 11 9 40 40 H 1.09000 * 109.46890 * 59.99979 * 12 11 9 41 41 H 0.97005 * 119.99900 * 334.99065 * 15 13 12 42 42 H 0.96993 * 120.00333 * 179.97438 * 19 18 16 43 43 H 1.08005 * 120.00074 * 359.97438 * 25 24 13 44 44 H 1.08007 * 119.99974 * 180.27411 * 26 25 24 45 45 H 1.08002 * 119.99933 * 179.83646 * 27 26 25 46 46 H 1.08005 * 119.99917 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.00556 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.4965 2.0025 1.1696 5 6 2.9484 3.3117 1.1229 6 6 2.9241 3.9961 -0.0821 7 7 2.4785 3.4201 -1.1770 8 6 2.0368 2.1683 -1.1752 9 6 1.5383 1.5633 -2.4325 10 8 1.2182 0.3913 -2.4576 11 7 1.4399 2.3128 -3.5482 12 6 0.9475 1.7145 -4.7916 13 6 0.9349 2.7725 -5.8967 14 1 1.9567 3.0851 -6.1120 15 7 0.1528 3.9301 -5.4557 16 6 0.3948 5.1655 -5.9945 17 1 1.1626 5.2865 -6.7445 18 6 -0.3465 6.2622 -5.5770 19 7 -1.2825 6.1147 -4.6635 20 14 -0.0158 7.9475 -6.3116 21 1 -0.2400 7.9007 -7.7789 22 1 -0.9343 8.9423 -5.7017 23 1 1.3901 8.3397 -6.0380 24 6 0.3145 2.1917 -7.1412 25 6 -1.0606 2.1027 -7.2510 26 6 -1.6299 1.5739 -8.3944 27 6 -0.8238 1.1257 -9.4240 28 6 0.5514 1.2099 -9.3120 29 6 1.1206 1.7427 -8.1704 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.5049 1.4481 2.0965 36 1 3.3160 3.7939 2.0166 37 1 3.2759 5.0164 -0.1224 38 1 1.6957 3.2483 -3.5283 39 1 1.6014 0.8927 -5.0832 40 1 -0.0635 1.3373 -4.6377 41 1 -0.5366 3.8214 -4.7819 42 1 -1.8003 6.8811 -4.3714 43 1 -1.6903 2.4491 -6.4448 44 1 -2.7044 1.5085 -8.4821 45 1 -1.2685 0.7102 -10.3162 46 1 1.1812 0.8594 -10.1163 47 1 2.1950 1.8085 -8.0830 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267363060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:24 Heat of formation + Delta-G solvation = 18.711973 kcal Electronic energy + Delta-G solvation = -28935.973875 eV Core-core repulsion = 25083.017516 eV Total energy + Delta-G solvation = -3852.956359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80866 -40.40129 -39.72388 -37.47608 -35.85480 -34.88922 -33.72786 -33.02974 -31.70331 -31.18868 -30.85988 -28.97787 -26.21545 -25.31936 -25.06049 -24.05560 -23.21740 -22.35132 -21.69197 -21.33707 -19.44027 -18.91130 -17.86655 -17.60555 -16.97339 -16.73484 -16.57847 -16.35902 -15.93539 -15.90899 -15.69468 -15.24313 -14.98014 -14.79367 -14.72446 -14.24681 -14.20554 -14.06055 -13.97357 -13.75185 -13.69122 -13.39695 -12.97665 -12.90312 -12.77682 -12.47067 -12.34404 -12.19111 -12.05438 -11.96942 -11.84064 -11.62395 -11.02089 -10.93204 -10.77011 -10.33634 -10.17189 -9.83974 -9.67690 -9.52762 -9.03299 -7.91517 -5.21147 -0.30714 0.28172 0.58648 0.64790 1.47750 1.49468 1.55047 1.75880 2.17492 2.56479 2.88613 3.01753 3.22270 3.42809 3.71196 3.78592 3.85626 3.98115 4.02815 4.06307 4.16115 4.21683 4.33672 4.35832 4.40775 4.41413 4.48291 4.54074 4.57512 4.68128 4.78738 4.81766 4.86493 5.01146 5.03213 5.09917 5.12481 5.21493 5.30108 5.30467 5.44720 5.52005 5.55466 5.69420 5.71726 5.73441 5.94385 6.25278 6.28517 6.47244 6.87320 7.18716 7.35496 8.03127 8.29883 9.30626 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008886 B = 0.003827 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.369990 B = 7314.289642 C = 9614.208815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.082 4.082 4 C -0.083 4.083 5 C -0.130 4.130 6 C 0.075 3.925 7 N -0.483 5.483 8 C 0.046 3.954 9 C 0.559 3.441 10 O -0.553 6.553 11 N -0.697 5.697 12 C 0.132 3.868 13 C 0.203 3.797 14 H 0.066 0.934 15 N -0.717 5.717 16 C -0.232 4.232 17 H 0.073 0.927 18 C -0.064 4.064 19 N -0.964 5.964 20 Si 0.964 3.036 21 H -0.284 1.284 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.099 4.099 25 C -0.110 4.110 26 C -0.136 4.136 27 C -0.130 4.130 28 C -0.125 4.125 29 C -0.127 4.127 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.414 0.586 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.094 0.906 44 H 0.128 0.872 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.667 -11.484 7.706 16.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.109 4.109 5 C -0.150 4.150 6 C -0.085 4.085 7 N -0.195 5.195 8 C -0.091 4.091 9 C 0.345 3.655 10 O -0.432 6.432 11 N -0.347 5.347 12 C 0.008 3.992 13 C 0.094 3.906 14 H 0.084 0.916 15 N -0.357 5.357 16 C -0.363 4.363 17 H 0.091 0.909 18 C -0.257 4.257 19 N -0.614 5.614 20 Si 0.794 3.206 21 H -0.211 1.211 22 H -0.225 1.225 23 H -0.203 1.203 24 C -0.102 4.102 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.148 4.148 28 C -0.143 4.143 29 C -0.146 4.146 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.195 0.805 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.251 0.749 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.206 0.794 42 H 0.057 0.943 43 H 0.112 0.888 44 H 0.146 0.854 45 H 0.163 0.837 46 H 0.165 0.835 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.490 -11.702 6.750 15.956 hybrid contribution -0.534 1.409 0.450 1.573 sum 7.955 -10.293 7.201 14.869 Atomic orbital electron populations 1.21579 0.94802 1.02087 1.00489 1.20712 0.96325 0.90782 1.04190 1.21177 0.96329 0.98207 0.92761 1.21979 0.95307 0.95510 0.98097 1.22802 0.97229 0.94823 1.00101 1.23337 0.95905 1.01299 0.87968 1.67519 1.08849 1.09778 1.33321 1.20922 1.02501 0.91605 0.94085 1.18281 0.78081 0.85671 0.83434 1.90667 1.51258 1.16171 1.85131 1.45904 1.64197 1.15282 1.09336 1.21490 0.99098 0.95537 0.83112 1.19531 0.94960 0.86432 0.89681 0.91569 1.42439 1.42422 1.03227 1.47570 1.19420 1.14428 0.85864 1.16606 0.90915 1.25384 0.98984 1.01101 1.00197 1.69805 1.26316 1.30338 1.34965 0.85352 0.77223 0.80395 0.77598 1.21074 1.22518 1.20279 1.20813 0.94254 0.97505 0.97653 1.20935 0.95099 0.98507 0.98282 1.21341 1.00535 0.99545 0.93969 1.21392 0.94017 1.00334 0.99047 1.21412 0.95428 0.99553 0.97896 1.21269 1.00189 0.99325 0.93770 0.95411 0.91352 0.92452 0.89838 0.88632 0.80509 0.80085 0.80281 0.74916 0.89998 0.92938 0.79415 0.94257 0.88768 0.85378 0.83692 0.83461 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.41 71.98 0.68 -2.68 16 2 C -0.08 -1.97 5.35 29.85 0.16 -1.81 16 3 C -0.08 -2.10 5.19 -19.52 -0.10 -2.20 16 4 C -0.08 -1.48 9.81 22.44 0.22 -1.26 16 5 C -0.13 -2.15 10.11 22.44 0.23 -1.92 16 6 C 0.08 1.77 11.18 84.83 0.95 2.72 16 7 N -0.48 -15.67 9.55 -184.91 -1.77 -17.44 16 8 C 0.05 1.50 6.74 41.89 0.28 1.78 16 9 C 0.56 20.68 7.38 86.88 0.64 21.32 16 10 O -0.55 -21.10 11.76 -3.77 -0.04 -21.14 16 11 N -0.70 -26.48 5.38 -465.66 -2.50 -28.98 16 12 C 0.13 4.85 5.21 86.38 0.45 5.30 16 13 C 0.20 8.01 2.64 44.24 0.12 8.12 16 14 H 0.07 2.57 7.94 -2.39 -0.02 2.55 16 15 N -0.72 -34.82 3.81 -326.51 -1.24 -36.07 16 16 C -0.23 -12.46 9.92 84.03 0.83 -11.62 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 19 N -0.96 -58.24 13.06 21.65 0.28 -57.96 16 20 Si 0.96 46.05 29.55 68.60 2.03 48.08 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.10 -3.67 4.92 -19.87 -0.10 -3.77 16 25 C -0.11 -4.23 9.32 22.27 0.21 -4.02 16 26 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 27 C -0.13 -3.52 10.05 22.27 0.22 -3.30 16 28 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 29 C -0.13 -3.94 9.67 22.27 0.22 -3.72 16 30 H 0.03 0.89 6.44 -2.38 -0.02 0.88 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 2.40 5.92 -2.39 -0.01 2.39 16 34 H 0.10 1.58 8.02 -2.38 -0.02 1.57 16 35 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.41 16.93 7.48 -92.71 -0.69 16.24 16 39 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.37 20.04 7.80 -92.70 -0.72 19.32 16 42 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.09 4.08 7.73 -2.91 -0.02 4.06 16 44 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 45 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 46 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 47 H 0.13 3.54 8.04 -2.91 -0.02 3.52 16 Total: -1.00 -70.04 393.37 2.25 -67.79 By element: Atomic # 1 Polarization: 53.61 SS G_CDS: -0.42 Total: 53.19 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.92 Total: -7.47 kcal Atomic # 7 Polarization: -135.21 SS G_CDS: -5.23 Total: -140.44 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.04 Total: -21.14 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -70.04 2.25 -67.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267363060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.503 kcal (2) G-P(sol) polarization free energy of solvation -70.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds