Wall clock time and date at job start Tue Mar 31 2020 22:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47406 * 2 1 4 4 C 1.38631 * 120.46711 * 102.06112 * 3 2 1 5 5 C 1.38587 * 118.48769 * 180.28506 * 4 3 2 6 6 C 1.38598 * 119.35057 * 359.73280 * 5 4 3 7 7 N 1.31497 * 120.90177 * 359.97438 * 6 5 4 8 8 C 1.32752 * 121.64385 * 359.97438 * 7 6 5 9 9 C 1.48161 * 119.72267 * 179.97438 * 8 7 6 10 10 O 1.21514 * 119.99590 * 174.98979 * 9 8 7 11 11 N 1.34770 * 120.00372 * 355.00079 * 9 8 7 12 12 C 1.46503 * 120.00275 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.46997 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47354 * 294.99600 * 13 12 11 15 15 N 1.46499 * 109.47459 * 55.00242 * 13 12 11 16 16 C 1.36935 * 120.00077 * 204.99947 * 15 13 12 17 17 H 1.08003 * 120.00148 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00200 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99827 * 0.27654 * 18 16 15 20 20 Si 1.86794 * 120.00219 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47129 * 60.00188 * 20 18 16 22 22 H 1.48505 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47250 * 300.00088 * 20 18 16 24 24 C 1.50706 * 109.47208 * 174.99812 * 13 12 11 25 25 C 1.38228 * 120.00065 * 279.73219 * 24 13 12 26 26 C 1.38237 * 119.99985 * 179.78366 * 25 24 13 27 27 C 1.38232 * 120.00028 * 0.44034 * 26 25 24 28 28 C 1.38233 * 119.99968 * 359.80899 * 27 26 25 29 29 C 1.38233 * 119.99924 * 99.99504 * 24 13 12 30 30 H 1.08999 * 109.46506 * 299.99793 * 1 2 3 31 31 H 1.09000 * 109.46983 * 59.99787 * 1 2 3 32 32 H 1.08996 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47002 * 240.00150 * 2 1 3 34 34 H 1.09000 * 109.46983 * 120.00213 * 2 1 3 35 35 H 1.08004 * 120.76168 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.32395 * 179.71102 * 5 4 3 37 37 H 1.07997 * 119.55045 * 180.02562 * 6 5 4 38 38 H 0.97005 * 120.00147 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.46924 * 59.99434 * 12 11 9 40 40 H 1.08998 * 109.47014 * 299.99072 * 12 11 9 41 41 H 0.97001 * 120.00028 * 24.99158 * 15 13 12 42 42 H 0.97008 * 119.99826 * 359.72186 * 19 18 16 43 43 H 1.08001 * 120.00272 * 359.97438 * 25 24 13 44 44 H 1.08001 * 119.99794 * 180.26896 * 26 25 24 45 45 H 1.08005 * 120.00078 * 179.83372 * 27 26 25 46 46 H 1.08005 * 120.00378 * 180.02562 * 28 27 26 47 47 H 1.08002 * 119.99928 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.5022 2.0002 1.1685 5 6 2.9489 3.3114 1.1230 6 6 2.9187 3.9979 -0.0806 7 7 2.4733 3.4220 -1.1756 8 6 2.0375 2.1680 -1.1752 9 6 1.5443 1.5613 -2.4337 10 8 1.2299 0.3878 -2.4600 11 7 1.4444 2.3108 -3.5493 12 6 0.9572 1.7108 -4.7938 13 6 0.9406 2.7695 -5.8981 14 1 0.2154 3.5439 -5.6482 15 7 2.2720 3.3685 -6.0206 16 6 2.4103 4.6311 -6.5322 17 1 1.5380 5.1853 -6.8459 18 6 3.6718 5.1989 -6.6477 19 7 4.7354 4.5214 -6.2705 20 14 3.8606 6.9209 -7.3463 21 1 3.1102 7.8834 -6.5002 22 1 5.2981 7.2930 -7.3642 23 1 3.3236 6.9553 -8.7304 24 6 0.5574 2.1257 -7.2057 25 6 1.5031 1.4334 -7.9386 26 6 1.1505 0.8390 -9.1358 27 6 -0.1456 0.9446 -9.6046 28 6 -1.0901 1.6413 -8.8742 29 6 -0.7385 2.2320 -7.6749 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.5150 1.4443 2.0944 36 1 3.3166 3.7935 2.0167 37 1 3.2664 5.0196 -0.1199 38 1 1.6952 3.2477 -3.5283 39 1 -0.0522 1.3286 -4.6421 40 1 1.6157 0.8923 -5.0847 41 1 3.0555 2.8707 -5.7391 42 1 4.6374 3.6270 -5.9081 43 1 2.5168 1.3542 -7.5743 44 1 1.8884 0.2944 -9.7062 45 1 -0.4204 0.4825 -10.5413 46 1 -2.1029 1.7235 -9.2403 47 1 -1.4765 2.7762 -7.1042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267363061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:28 Heat of formation + Delta-G solvation = 36.938393 kcal Electronic energy + Delta-G solvation = -28956.811578 eV Core-core repulsion = 25104.645576 eV Total energy + Delta-G solvation = -3852.166002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78468 -39.16009 -38.54508 -36.13018 -34.76191 -33.55151 -32.44466 -31.88020 -30.44724 -29.90991 -29.36090 -27.47136 -24.88548 -24.17488 -23.43572 -22.81109 -21.98104 -21.42825 -20.48851 -20.08204 -17.99956 -17.40113 -16.82141 -16.46206 -15.87576 -15.49937 -15.34715 -15.07559 -14.73911 -14.56921 -14.19308 -13.95342 -13.88983 -13.63934 -13.41949 -13.14167 -13.13124 -12.90140 -12.81237 -12.78154 -12.32671 -12.07608 -11.94527 -11.44394 -11.11934 -11.03006 -10.93091 -10.78236 -10.63540 -10.36722 -10.00853 -9.95552 -9.83599 -9.32017 -9.24859 -9.08878 -9.03866 -8.65136 -8.44690 -8.22117 -7.14831 -6.12758 -3.15753 0.64220 1.14124 1.82362 1.88512 2.88286 3.36578 3.51049 3.54248 3.71223 3.87803 4.21413 4.27584 4.62677 4.63975 4.67395 4.82673 4.88974 5.19068 5.21132 5.31327 5.34518 5.37542 5.42097 5.44726 5.47578 5.53180 5.56031 5.70418 5.74508 5.80062 5.87435 5.95342 5.98968 5.99562 6.04799 6.14719 6.26053 6.35090 6.36831 6.44808 6.55750 6.58274 6.78599 6.89955 6.97318 7.23575 7.48343 7.65225 7.77788 7.96774 8.45318 8.71424 9.12936 10.00183 10.12648 11.34348 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003843 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.331956 B = 7284.030643 C = 9839.920864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 C -0.074 4.074 4 C -0.088 4.088 5 C -0.150 4.150 6 C 0.093 3.907 7 N -0.446 5.446 8 C 0.079 3.921 9 C 0.565 3.435 10 O -0.537 6.537 11 N -0.693 5.693 12 C 0.118 3.882 13 C 0.204 3.796 14 H 0.066 0.934 15 N -0.723 5.723 16 C -0.333 4.333 17 H 0.065 0.935 18 C -0.036 4.036 19 N -0.938 5.938 20 Si 1.077 2.923 21 H -0.295 1.295 22 H -0.286 1.286 23 H -0.296 1.296 24 C -0.080 4.080 25 C -0.084 4.084 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.129 4.129 29 C -0.120 4.120 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.421 0.579 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.370 0.630 42 H 0.255 0.745 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 -6.664 11.211 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.126 4.126 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.170 4.170 6 C -0.067 4.067 7 N -0.156 5.156 8 C -0.059 4.059 9 C 0.350 3.650 10 O -0.416 6.416 11 N -0.344 5.344 12 C -0.006 4.006 13 C 0.093 3.907 14 H 0.084 0.916 15 N -0.365 5.365 16 C -0.463 4.463 17 H 0.083 0.917 18 C -0.235 4.235 19 N -0.583 5.583 20 Si 0.908 3.092 21 H -0.222 1.222 22 H -0.211 1.211 23 H -0.223 1.223 24 C -0.084 4.084 25 C -0.103 4.103 26 C -0.145 4.145 27 C -0.152 4.152 28 C -0.147 4.147 29 C -0.138 4.138 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.180 0.820 38 H 0.259 0.741 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.204 0.796 42 H 0.066 0.934 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.635 -5.671 9.894 13.724 hybrid contribution -0.636 -1.112 1.105 1.691 sum -8.271 -6.783 10.999 15.343 Atomic orbital electron populations 1.21610 0.94318 1.01782 1.01440 1.20769 0.96820 0.91080 1.03899 1.20944 0.96334 0.97889 0.92544 1.21516 0.96914 0.95078 0.97931 1.22364 0.99558 0.95270 0.99822 1.22838 0.95928 1.00396 0.87541 1.67646 1.07521 1.09664 1.30783 1.21073 1.00067 0.90842 0.93927 1.17859 0.78447 0.85782 0.82922 1.90690 1.50569 1.15434 1.84871 1.45893 1.64174 1.15623 1.08702 1.21661 0.99443 0.96288 0.83229 1.19402 0.90232 0.92452 0.88663 0.91573 1.42432 1.01232 1.16511 1.76322 1.19960 0.95276 0.91864 1.39219 0.91719 1.25690 0.91136 1.05710 1.00939 1.70895 1.29736 1.12847 1.44827 0.83283 0.75778 0.74559 0.75578 1.22205 1.21110 1.22347 1.20949 0.92820 0.95800 0.98789 1.20948 0.99364 0.95686 0.94275 1.21099 0.96165 1.00557 0.96689 1.20982 0.93824 1.00675 0.99705 1.20991 0.98940 0.99154 0.95604 1.21006 0.96044 1.00303 0.96490 0.93830 0.91965 0.92397 0.87406 0.91971 0.84414 0.84383 0.82027 0.74095 0.91200 0.91478 0.79625 0.93385 0.86301 0.86830 0.87001 0.86909 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.42 37.16 0.35 -1.21 16 2 C -0.09 -1.06 5.36 -27.88 -0.15 -1.21 16 3 C -0.07 -0.97 5.19 -104.10 -0.54 -1.51 16 4 C -0.09 -0.91 9.81 -39.31 -0.39 -1.30 16 5 C -0.15 -1.47 10.11 -39.32 -0.40 -1.87 16 6 C 0.09 1.15 11.18 -17.56 -0.20 0.95 16 7 N -0.45 -7.06 9.55 -9.80 -0.09 -7.15 16 8 C 0.08 1.25 6.74 -83.01 -0.56 0.69 16 9 C 0.57 9.74 7.38 -12.19 -0.09 9.65 16 10 O -0.54 -9.58 11.79 5.35 0.06 -9.52 16 11 N -0.69 -12.20 5.38 -61.15 -0.33 -12.53 16 12 C 0.12 2.04 5.21 -4.04 -0.02 2.02 16 13 C 0.20 3.88 2.65 -69.08 -0.18 3.70 16 14 H 0.07 1.28 7.94 -51.93 -0.41 0.87 16 15 N -0.72 -16.72 3.79 -54.55 -0.21 -16.92 16 16 C -0.33 -8.83 9.92 -15.06 -0.15 -8.98 16 17 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 18 C -0.04 -1.02 5.50 -17.43 -0.10 -1.11 16 19 N -0.94 -28.05 13.70 55.49 0.76 -27.29 16 20 Si 1.08 25.52 29.92 -169.99 -5.09 20.43 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.30 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.08 -1.47 4.92 -104.62 -0.52 -1.98 16 25 C -0.08 -1.58 9.33 -39.59 -0.37 -1.95 16 26 C -0.13 -2.08 10.05 -39.58 -0.40 -2.48 16 27 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 28 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 29 C -0.12 -1.95 9.67 -39.58 -0.38 -2.34 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.86 6.47 -51.93 -0.34 0.53 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.54 5.90 -51.93 -0.31 1.23 16 34 H 0.06 0.60 8.02 -51.93 -0.42 0.18 16 35 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.42 7.99 7.48 -40.82 -0.31 7.68 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.37 9.04 6.63 -40.82 -0.27 8.77 16 42 H 0.25 7.54 6.78 -40.82 -0.28 7.27 16 43 H 0.12 2.37 7.71 -52.49 -0.40 1.96 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 47 H 0.11 1.66 8.04 -52.49 -0.42 1.23 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -31.41 391.68 -10.45 -41.86 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -6.58 Total: 18.87 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -4.88 Total: -13.65 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.13 Total: -63.89 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.52 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -5.09 Total: 20.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.41 -10.45 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267363061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.803 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds