Wall clock time and date at job start Tue Mar 31 2020 22:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47406 * 2 1 4 4 C 1.38631 * 120.46711 * 102.06112 * 3 2 1 5 5 C 1.38587 * 118.48769 * 180.28506 * 4 3 2 6 6 C 1.38598 * 119.35057 * 359.73280 * 5 4 3 7 7 N 1.31497 * 120.90177 * 359.97438 * 6 5 4 8 8 C 1.32752 * 121.64385 * 359.97438 * 7 6 5 9 9 C 1.48161 * 119.72267 * 179.97438 * 8 7 6 10 10 O 1.21514 * 119.99590 * 174.98979 * 9 8 7 11 11 N 1.34770 * 120.00372 * 355.00079 * 9 8 7 12 12 C 1.46503 * 120.00275 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.46997 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47354 * 294.99600 * 13 12 11 15 15 N 1.46499 * 109.47459 * 55.00242 * 13 12 11 16 16 C 1.36935 * 120.00077 * 204.99947 * 15 13 12 17 17 H 1.08003 * 120.00148 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00200 * 179.97438 * 16 15 13 19 19 N 1.31623 * 119.99827 * 0.27654 * 18 16 15 20 20 Si 1.86794 * 120.00219 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47129 * 60.00188 * 20 18 16 22 22 H 1.48505 * 109.47172 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47250 * 300.00088 * 20 18 16 24 24 C 1.50706 * 109.47208 * 174.99812 * 13 12 11 25 25 C 1.38228 * 120.00065 * 279.73219 * 24 13 12 26 26 C 1.38237 * 119.99985 * 179.78366 * 25 24 13 27 27 C 1.38232 * 120.00028 * 0.44034 * 26 25 24 28 28 C 1.38233 * 119.99968 * 359.80899 * 27 26 25 29 29 C 1.38233 * 119.99924 * 99.99504 * 24 13 12 30 30 H 1.08999 * 109.46506 * 299.99793 * 1 2 3 31 31 H 1.09000 * 109.46983 * 59.99787 * 1 2 3 32 32 H 1.08996 * 109.47220 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47002 * 240.00150 * 2 1 3 34 34 H 1.09000 * 109.46983 * 120.00213 * 2 1 3 35 35 H 1.08004 * 120.76168 * 359.97438 * 4 3 2 36 36 H 1.08003 * 120.32395 * 179.71102 * 5 4 3 37 37 H 1.07997 * 119.55045 * 180.02562 * 6 5 4 38 38 H 0.97005 * 120.00147 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.46924 * 59.99434 * 12 11 9 40 40 H 1.08998 * 109.47014 * 299.99072 * 12 11 9 41 41 H 0.97001 * 120.00028 * 24.99158 * 15 13 12 42 42 H 0.97008 * 119.99826 * 359.72186 * 19 18 16 43 43 H 1.08001 * 120.00272 * 359.97438 * 25 24 13 44 44 H 1.08001 * 119.99794 * 180.26896 * 26 25 24 45 45 H 1.08005 * 120.00078 * 179.83372 * 27 26 25 46 46 H 1.08005 * 120.00378 * 180.02562 * 28 27 26 47 47 H 1.08002 * 119.99928 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.5022 2.0002 1.1685 5 6 2.9489 3.3114 1.1230 6 6 2.9187 3.9979 -0.0806 7 7 2.4733 3.4220 -1.1756 8 6 2.0375 2.1680 -1.1752 9 6 1.5443 1.5613 -2.4337 10 8 1.2299 0.3878 -2.4600 11 7 1.4444 2.3108 -3.5493 12 6 0.9572 1.7108 -4.7938 13 6 0.9406 2.7695 -5.8981 14 1 0.2154 3.5439 -5.6482 15 7 2.2720 3.3685 -6.0206 16 6 2.4103 4.6311 -6.5322 17 1 1.5380 5.1853 -6.8459 18 6 3.6718 5.1989 -6.6477 19 7 4.7354 4.5214 -6.2705 20 14 3.8606 6.9209 -7.3463 21 1 3.1102 7.8834 -6.5002 22 1 5.2981 7.2930 -7.3642 23 1 3.3236 6.9553 -8.7304 24 6 0.5574 2.1257 -7.2057 25 6 1.5031 1.4334 -7.9386 26 6 1.1505 0.8390 -9.1358 27 6 -0.1456 0.9446 -9.6046 28 6 -1.0901 1.6413 -8.8742 29 6 -0.7385 2.2320 -7.6749 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.5150 1.4443 2.0944 36 1 3.3166 3.7935 2.0167 37 1 3.2664 5.0196 -0.1199 38 1 1.6952 3.2477 -3.5283 39 1 -0.0522 1.3286 -4.6421 40 1 1.6157 0.8923 -5.0847 41 1 3.0555 2.8707 -5.7391 42 1 4.6374 3.6270 -5.9081 43 1 2.5168 1.3542 -7.5743 44 1 1.8884 0.2944 -9.7062 45 1 -0.4204 0.4825 -10.5413 46 1 -2.1029 1.7235 -9.2403 47 1 -1.4765 2.7762 -7.1042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267363061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:27 Heat of formation + Delta-G solvation = 18.533824 kcal Electronic energy + Delta-G solvation = -28957.609660 eV Core-core repulsion = 25104.645576 eV Total energy + Delta-G solvation = -3852.964084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.86975 -40.48994 -39.79461 -37.64458 -35.99114 -35.05842 -33.81869 -33.07143 -31.75502 -31.04457 -30.88742 -28.94581 -26.13526 -25.33847 -25.09969 -24.16077 -23.29865 -22.39114 -21.78724 -21.48805 -19.50299 -19.09272 -18.02004 -17.69219 -16.94113 -16.83147 -16.64869 -16.43633 -16.09486 -15.86566 -15.70506 -15.49970 -15.13788 -14.96097 -14.56214 -14.45729 -14.25229 -14.14091 -14.06413 -13.73039 -13.70509 -13.45488 -13.00243 -12.75527 -12.70794 -12.53547 -12.37550 -12.10202 -11.99695 -11.91430 -11.77169 -11.28901 -11.04318 -10.97059 -10.79935 -10.38755 -10.24911 -9.90760 -9.74727 -9.59702 -9.13570 -8.34071 -5.29990 -0.35704 0.23989 0.51690 0.57643 1.58318 1.67527 1.69215 1.83381 2.08950 2.70908 2.83357 2.94494 3.16451 3.44336 3.61216 3.67884 3.81525 3.90469 3.93450 4.02398 4.05813 4.13997 4.23757 4.27620 4.33747 4.38144 4.43963 4.51462 4.53508 4.58122 4.70013 4.74561 4.83317 4.92499 4.99928 5.06857 5.08936 5.14749 5.22672 5.24630 5.41426 5.47497 5.61498 5.62986 5.66200 5.67738 5.86742 6.19676 6.38554 6.51608 6.81574 7.06612 7.11288 7.96432 8.08616 9.16186 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003843 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.331956 B = 7284.030643 C = 9839.920864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.080 4.080 4 C -0.083 4.083 5 C -0.128 4.128 6 C 0.075 3.925 7 N -0.486 5.486 8 C 0.044 3.956 9 C 0.559 3.441 10 O -0.551 6.551 11 N -0.699 5.699 12 C 0.132 3.868 13 C 0.209 3.791 14 H 0.063 0.937 15 N -0.729 5.729 16 C -0.319 4.319 17 H 0.064 0.936 18 C -0.095 4.095 19 N -0.972 5.972 20 Si 1.122 2.878 21 H -0.276 1.276 22 H -0.296 1.296 23 H -0.284 1.284 24 C -0.100 4.100 25 C -0.112 4.112 26 C -0.135 4.135 27 C -0.128 4.128 28 C -0.123 4.123 29 C -0.127 4.127 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.179 0.821 36 H 0.183 0.817 37 H 0.179 0.821 38 H 0.413 0.587 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.359 0.641 42 H 0.241 0.759 43 H 0.091 0.909 44 H 0.129 0.871 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.032 -6.506 12.406 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.108 4.108 5 C -0.147 4.147 6 C -0.085 4.085 7 N -0.197 5.197 8 C -0.093 4.093 9 C 0.346 3.654 10 O -0.430 6.430 11 N -0.350 5.350 12 C 0.007 3.993 13 C 0.100 3.900 14 H 0.081 0.919 15 N -0.370 5.370 16 C -0.451 4.451 17 H 0.082 0.918 18 C -0.287 4.287 19 N -0.620 5.620 20 Si 0.948 3.052 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.211 1.211 24 C -0.103 4.103 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.146 4.146 28 C -0.141 4.141 29 C -0.146 4.146 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.196 0.804 36 H 0.200 0.800 37 H 0.196 0.804 38 H 0.250 0.750 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.192 0.808 42 H 0.052 0.948 43 H 0.109 0.891 44 H 0.147 0.853 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.398 -5.550 11.088 15.559 hybrid contribution -0.190 -1.222 0.789 1.467 sum -9.588 -6.773 11.877 16.699 Atomic orbital electron populations 1.21561 0.94154 1.02195 1.00768 1.20735 0.96938 0.90675 1.03983 1.21174 0.96288 0.98113 0.92708 1.21995 0.95210 0.95449 0.98168 1.22815 0.96991 0.94830 1.00098 1.23332 0.95869 1.01438 0.87903 1.67528 1.08972 1.10171 1.33024 1.20900 1.02750 0.91704 0.93955 1.18307 0.77937 0.85682 0.83501 1.90670 1.51198 1.15862 1.85316 1.45919 1.64754 1.15216 1.09063 1.21494 0.99673 0.95265 0.82852 1.19451 0.88011 0.92633 0.89924 0.91862 1.42450 1.02477 1.15774 1.76273 1.20201 0.94963 0.92779 1.37111 0.91812 1.26940 0.91198 1.08675 1.01862 1.70997 1.30711 1.12750 1.47517 0.82688 0.75291 0.71405 0.75809 1.20226 1.22196 1.21086 1.20788 0.94160 0.97125 0.98267 1.20892 0.98369 0.97764 0.96004 1.21348 0.97733 1.00322 0.95886 1.21414 0.92771 0.99703 1.00714 1.21430 1.00648 0.97523 0.94482 1.21265 0.95295 1.00541 0.97477 0.92047 0.94967 0.91436 0.90321 0.88762 0.80376 0.79973 0.80401 0.75041 0.89905 0.92945 0.80830 0.94822 0.89110 0.85258 0.83447 0.83260 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.42 71.98 0.68 -2.27 16 2 C -0.09 -2.01 5.36 29.85 0.16 -1.85 16 3 C -0.08 -2.03 5.19 -19.52 -0.10 -2.13 16 4 C -0.08 -1.45 9.81 22.45 0.22 -1.22 16 5 C -0.13 -2.10 10.11 22.44 0.23 -1.87 16 6 C 0.07 1.78 11.18 84.83 0.95 2.73 16 7 N -0.49 -15.94 9.55 -184.92 -1.77 -17.71 16 8 C 0.04 1.43 6.74 41.89 0.28 1.71 16 9 C 0.56 20.68 7.38 86.88 0.64 21.32 16 10 O -0.55 -21.01 11.79 -3.76 -0.04 -21.05 16 11 N -0.70 -26.64 5.38 -465.68 -2.50 -29.14 16 12 C 0.13 4.87 5.21 86.38 0.45 5.32 16 13 C 0.21 8.38 2.65 44.25 0.12 8.50 16 14 H 0.06 2.54 7.94 -2.39 -0.02 2.53 16 15 N -0.73 -35.68 3.79 -326.50 -1.24 -36.92 16 16 C -0.32 -17.50 9.92 84.03 0.83 -16.66 16 17 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 18 C -0.10 -5.45 5.50 84.86 0.47 -4.98 16 19 N -0.97 -60.63 13.70 21.65 0.30 -60.34 16 20 Si 1.12 52.28 29.92 68.60 2.05 54.33 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C -0.10 -3.77 4.92 -19.87 -0.10 -3.87 16 25 C -0.11 -4.35 9.33 22.27 0.21 -4.14 16 26 C -0.13 -4.36 10.05 22.27 0.22 -4.13 16 27 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 28 C -0.12 -3.29 10.05 22.27 0.22 -3.07 16 29 C -0.13 -4.01 9.67 22.27 0.22 -3.79 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.91 6.47 -2.39 -0.02 0.90 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.33 5.90 -2.39 -0.01 2.31 16 34 H 0.09 1.56 8.02 -2.39 -0.02 1.54 16 35 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.41 17.00 7.48 -92.70 -0.69 16.31 16 39 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.36 19.01 6.63 -92.71 -0.61 18.40 16 42 H 0.24 15.20 6.78 -92.70 -0.63 14.57 16 43 H 0.09 3.95 7.71 -2.91 -0.02 3.93 16 44 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 45 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 46 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 47 H 0.13 3.60 8.04 -2.91 -0.02 3.58 16 Total: -1.00 -72.93 391.68 2.55 -70.39 By element: Atomic # 1 Polarization: 54.27 SS G_CDS: -0.17 Total: 54.10 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 5.92 Total: -13.66 kcal Atomic # 7 Polarization: -138.90 SS G_CDS: -5.21 Total: -144.11 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.04 Total: -21.05 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.05 Total: 54.33 kcal Total: -72.93 2.55 -70.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267363061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.920 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds