Wall clock time and date at job start Tue Mar 31 2020 22:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29946 * 126.28301 * 2 1 4 4 O 1.21309 * 110.24521 * 179.73128 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 C 1.50696 * 109.47055 * 179.97438 * 7 6 5 9 9 O 1.21279 * 120.00218 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00208 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99730 * 0.02562 * 10 8 7 12 12 C 1.46496 * 120.00107 * 180.02562 * 10 8 7 13 13 C 1.52999 * 109.47310 * 90.00166 * 12 10 8 14 14 N 1.46906 * 109.46972 * 179.97438 * 13 12 10 15 15 C 1.46902 * 110.99848 * 179.97438 * 14 13 12 16 16 C 1.50693 * 109.46922 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00322 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99986 * 180.02562 * 16 15 14 19 19 C 1.37090 * 120.00415 * 180.02562 * 18 16 15 20 20 H 1.08013 * 119.99715 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00624 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99663 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00508 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46943 * 60.00049 * 23 21 19 25 25 H 1.48503 * 109.47236 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47178 * 300.00197 * 23 21 19 27 27 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 28 28 H 1.09001 * 109.46720 * 269.97027 * 1 2 3 29 29 H 1.08998 * 109.47458 * 29.96895 * 1 2 3 30 30 H 1.09000 * 109.47577 * 149.97125 * 1 2 3 31 31 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 32 32 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99686 * 7 6 5 34 34 H 1.09004 * 109.47261 * 59.99705 * 7 6 5 35 35 H 1.08995 * 109.46994 * 90.00015 * 11 10 8 36 36 H 1.08998 * 109.47007 * 210.00594 * 11 10 8 37 37 H 1.09001 * 109.47259 * 330.00063 * 11 10 8 38 38 H 1.09001 * 109.47017 * 209.99969 * 12 10 8 39 39 H 1.08997 * 109.47346 * 329.99656 * 12 10 8 40 40 H 1.09001 * 109.46919 * 299.99862 * 13 12 10 41 41 H 1.08994 * 109.47579 * 59.99935 * 13 12 10 42 42 H 1.00899 * 111.00075 * 56.04920 * 14 13 12 43 43 H 1.09003 * 109.47409 * 300.00646 * 15 14 13 44 44 H 1.09006 * 109.46478 * 60.00058 * 15 14 13 45 45 H 0.97000 * 120.00052 * 0.02562 * 18 16 15 46 46 H 0.97000 * 120.00403 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4419 0.7124 0.0053 5 6 3.5298 -0.6211 -0.0009 6 6 4.7969 -1.4370 -0.0016 7 6 5.2252 -1.7126 -1.4443 8 6 6.4926 -2.5279 -1.4450 9 8 7.0028 -2.8566 -0.3950 10 7 7.0586 -2.8928 -2.6125 11 6 6.4420 -2.4962 -3.8810 12 6 8.2904 -3.6858 -2.6132 13 6 7.9383 -5.1747 -2.6130 14 7 9.1736 -5.9699 -2.6143 15 6 8.8738 -7.4081 -2.6135 16 6 10.1622 -8.1896 -2.6155 17 8 11.2256 -7.6062 -2.6168 18 7 10.1330 -9.5371 -2.6158 19 6 11.3050 -10.2483 -2.6170 20 1 12.2519 -9.7286 -2.6182 21 6 11.2749 -11.6374 -2.6178 22 7 10.1229 -12.2696 -2.6179 23 14 12.8720 -12.6064 -2.6202 24 1 13.6597 -12.2653 -1.4084 25 1 12.5690 -14.0601 -2.6201 26 1 13.6569 -12.2639 -3.8334 27 7 2.3030 -1.0841 -0.0006 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5143 31 1 5.5844 -0.8855 0.5121 32 1 4.6209 -2.3821 0.5121 33 1 4.4377 -2.2641 -1.9580 34 1 5.4013 -0.7675 -1.9580 35 1 6.8454 -1.5338 -4.1958 36 1 6.6587 -3.2472 -4.6407 37 1 5.3631 -2.4126 -3.7501 38 1 8.8735 -3.4505 -3.5035 39 1 8.8745 -3.4505 -1.7235 40 1 7.3551 -5.4101 -1.7227 41 1 7.3543 -5.4102 -3.5026 42 1 9.7631 -5.7234 -1.8334 43 1 8.2976 -7.6587 -1.7229 44 1 8.2956 -7.6590 -3.5029 45 1 9.2826 -10.0038 -2.6151 46 1 10.1017 -13.2393 -2.6188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267409767.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:58 Heat of formation + Delta-G solvation = -2.639083 kcal Electronic energy + Delta-G solvation = -27733.648929 eV Core-core repulsion = 23468.917455 eV Total energy + Delta-G solvation = -4264.731474 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.03979 -40.35617 -38.28248 -36.70404 -36.48338 -35.15639 -34.99484 -33.80922 -32.15572 -31.22423 -29.98457 -29.54195 -27.19054 -26.78767 -25.35806 -24.06560 -23.65067 -22.22683 -21.59804 -19.63388 -19.15331 -18.55185 -18.01991 -17.86298 -17.38332 -16.66147 -16.35714 -15.97135 -15.58767 -15.21649 -14.80485 -14.50317 -14.38436 -14.15583 -14.09143 -13.81094 -13.73027 -13.38494 -13.26986 -13.22288 -13.07559 -13.03600 -12.73829 -12.63062 -12.21389 -12.06719 -11.79242 -11.75026 -11.51484 -11.49047 -11.47669 -11.12509 -10.96485 -10.43075 -10.41366 -10.20284 -10.13536 -9.48717 -9.05074 -8.45314 -8.08111 -7.94794 -6.40251 -3.81141 0.65569 1.73878 2.22750 2.26446 2.65829 3.17190 3.21478 3.26989 3.31574 3.57438 3.92262 4.01895 4.13791 4.24122 4.39605 4.43338 4.52406 4.71269 4.85403 4.87278 4.90613 4.94752 4.97023 5.05332 5.16626 5.18905 5.23810 5.28494 5.31615 5.35208 5.43356 5.47851 5.55495 5.72824 5.84147 5.86218 5.99031 6.15037 6.28709 6.98973 7.17174 7.56356 7.63008 7.70786 7.79077 8.07369 8.62663 9.19090 9.55580 10.07095 10.77425 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.001454 C = 0.001415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.306684 B =19248.834972 C =19778.595275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.387 5.387 4 O 0.077 5.923 5 C 0.187 3.813 6 C -0.014 4.014 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.533 6.533 10 N -0.613 5.613 11 C 0.074 3.926 12 C 0.116 3.884 13 C 0.046 3.954 14 N -0.667 5.667 15 C 0.053 3.947 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.480 5.480 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.351 0.649 43 H 0.044 0.956 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 24.502 0.710 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.096 5.096 4 O 0.019 5.981 5 C -0.033 4.033 6 C -0.053 4.053 7 C -0.178 4.178 8 C 0.304 3.696 9 O -0.409 6.409 10 N -0.346 5.346 11 C -0.069 4.069 12 C -0.006 4.006 13 C -0.085 4.085 14 N -0.300 5.300 15 C -0.080 4.080 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.214 5.214 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.171 0.829 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.091 25.048 0.580 31.500 hybrid contribution -0.102 -1.085 0.727 1.310 sum -19.193 23.964 1.306 30.730 Atomic orbital electron populations 1.20160 0.82846 1.04766 1.04433 1.25956 1.00693 0.83465 1.00366 1.74666 0.89388 1.23913 1.21595 1.85308 1.22376 1.24805 1.65571 1.28808 0.96957 0.82162 0.95396 1.19990 0.87928 0.99278 0.98116 1.21659 0.96920 1.02014 0.97230 1.20336 0.85575 0.80098 0.83626 1.90761 1.63809 1.55572 1.30785 1.47806 1.27020 1.53616 1.06188 1.21895 0.98293 1.01143 0.85598 1.21457 0.85049 0.89765 1.04364 1.22255 0.92613 0.92912 1.00728 1.60032 1.15184 1.03341 1.51404 1.21653 0.97013 0.88133 1.01224 1.19790 0.90047 0.83037 0.84503 1.90521 1.31473 1.69328 1.55410 1.41850 1.09525 1.04258 1.64359 1.19665 0.87081 0.88543 1.47706 0.87948 1.25259 0.98521 0.96823 0.97294 1.69604 1.24713 1.09483 1.50545 0.85912 0.81236 0.77949 0.79078 1.19911 1.20989 1.19880 1.71946 0.99737 1.29386 1.20351 0.89234 0.89450 0.88901 0.86884 0.86124 0.87755 0.87952 0.92116 0.90281 0.91005 0.89182 0.89539 0.95069 0.91155 0.82946 0.93792 0.89648 0.77455 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.17 1.45 8.22 -156.37 -1.28 0.16 16 3 N -0.39 -3.75 12.16 30.90 0.38 -3.38 16 4 O 0.08 0.68 11.31 18.11 0.20 0.88 16 5 C 0.19 1.46 7.77 -13.05 -0.10 1.35 16 6 C -0.01 -0.08 5.13 -27.88 -0.14 -0.23 16 7 C -0.14 -0.73 4.23 -27.89 -0.12 -0.85 16 8 C 0.52 4.61 7.67 -10.99 -0.08 4.53 16 9 O -0.53 -6.83 15.56 5.56 0.09 -6.74 16 10 N -0.61 -5.02 2.87 -181.57 -0.52 -5.54 16 11 C 0.07 0.35 10.24 59.85 0.61 0.96 16 12 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 13 C 0.05 0.56 6.01 -3.82 -0.02 0.54 16 14 N -0.67 -10.79 6.13 -115.05 -0.70 -11.49 16 15 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 16 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 17 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 18 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 19 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 N -0.48 -4.44 11.55 -9.87 -0.11 -4.55 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.12 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.10 0.46 7.40 -51.93 -0.38 0.08 16 34 H 0.10 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 37 H 0.07 0.22 6.44 -51.93 -0.33 -0.12 16 38 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.09 1.03 7.42 -51.93 -0.39 0.65 16 40 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.35 5.97 8.43 -39.29 -0.33 5.64 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -35.61 397.83 -6.84 -42.45 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -6.75 Total: 9.53 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -1.14 Total: 10.99 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.30 Total: -63.36 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.38 Total: -21.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.61 -6.84 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267409767.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.809 kcal (2) G-P(sol) polarization free energy of solvation -35.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds