Wall clock time and date at job start Tue Mar 31 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 N 1.46499 * 109.46922 * 299.99859 * 3 2 1 5 5 C 1.36935 * 120.00184 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00053 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47345 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47144 * 120.00224 * 9 7 5 12 12 H 1.48509 * 109.47230 * 240.00088 * 9 7 5 13 13 N 1.46502 * 109.47493 * 239.99407 * 2 1 3 14 14 C 1.34774 * 120.00322 * 174.49147 * 13 2 1 15 15 O 1.21548 * 119.99839 * 5.21866 * 14 13 2 16 16 C 1.47885 * 119.99965 * 185.21764 * 14 13 2 17 17 C 1.40573 * 119.70777 * 0.02562 * 16 14 13 18 18 C 1.35811 * 120.73307 * 179.97438 * 17 16 14 19 19 C 1.40546 * 119.98586 * 359.97438 * 18 17 16 20 20 C 1.40823 * 121.13458 * 179.97438 * 19 18 17 21 21 C 1.36550 * 118.19889 * 180.02562 * 20 19 18 22 22 C 1.39413 * 119.93763 * 359.97438 * 21 20 19 23 23 N 1.31025 * 121.71738 * 0.02803 * 22 21 20 24 24 C 1.33743 * 121.34717 * 359.95060 * 23 22 21 25 25 C 1.38411 * 119.70354 * 179.72473 * 16 14 13 26 26 C 1.53001 * 109.47033 * 119.99560 * 2 1 3 27 27 C 1.53009 * 117.49650 * 122.28002 * 26 2 1 28 28 C 1.52998 * 117.49707 * 53.66063 * 26 2 1 29 29 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46879 * 60.00628 * 1 2 3 31 31 H 1.08997 * 109.46978 * 300.00134 * 1 2 3 32 32 H 1.08993 * 109.47359 * 59.99536 * 3 2 1 33 33 H 1.09000 * 109.47345 * 179.97438 * 3 2 1 34 34 H 0.97006 * 120.00238 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99982 * 179.97438 * 8 7 5 36 36 H 0.97002 * 119.99777 * 354.50415 * 13 2 1 37 37 H 1.08002 * 119.62887 * 359.97438 * 17 16 14 38 38 H 1.08007 * 120.00386 * 179.97438 * 18 17 16 39 39 H 1.08000 * 120.89463 * 0.02562 * 20 19 18 40 40 H 1.07999 * 120.02948 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.14259 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.23233 * 0.02562 * 25 16 14 43 43 H 1.08996 * 115.55335 * 267.98276 * 26 2 1 44 44 H 1.08999 * 117.49870 * 359.97438 * 27 26 2 45 45 H 1.09001 * 117.49718 * 145.02242 * 27 26 2 46 46 H 1.09008 * 117.49893 * 214.97817 * 28 26 2 47 47 H 1.09000 * 117.50048 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1330 -1.1962 5 6 1.8829 3.4439 -1.4132 6 1 2.5038 3.9688 -0.7024 7 6 1.4206 4.0981 -2.5470 8 7 0.6644 3.4583 -3.4136 9 14 1.8719 5.8864 -2.8426 10 1 2.7246 6.3726 -1.7283 11 1 2.6149 6.0043 -4.1230 12 1 0.6343 6.7045 -2.9114 13 7 2.0184 -0.6907 -1.1961 14 6 3.3384 -0.7178 -1.4669 15 8 4.1315 -0.2524 -0.6721 16 6 3.8217 -1.3137 -2.7311 17 6 2.8990 -1.8497 -3.6462 18 6 3.3199 -2.4015 -4.8136 19 6 4.6915 -2.4404 -5.1179 20 6 5.1546 -3.0072 -6.3209 21 6 6.4999 -3.0138 -6.5552 22 6 7.3725 -2.4680 -5.6150 23 7 6.9385 -1.9414 -4.4965 24 6 5.6335 -1.9028 -4.2060 25 6 5.1782 -1.3330 -3.0056 26 6 2.0399 -0.7212 1.2493 27 6 2.9588 -1.9271 1.0432 28 6 1.5172 -2.1349 1.5117 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 0.9943 1.6615 -1.8349 35 1 0.3411 3.9155 -4.2056 36 1 1.3917 -1.1285 -1.7932 37 1 1.8437 -1.8223 -3.4183 38 1 2.6007 -2.8103 -5.5080 39 1 4.4645 -3.4254 -7.0387 40 1 6.8873 -3.4406 -7.4685 41 1 8.4341 -2.4796 -5.8136 42 1 5.8818 -0.9156 -2.3005 43 1 2.2293 -0.0859 2.1145 44 1 3.1996 -2.2070 0.0177 45 1 3.7529 -2.0853 1.7730 46 1 1.3629 -2.4299 2.5497 47 1 0.8096 -2.5511 0.7946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267861707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:54 Heat of formation + Delta-G solvation = 73.995221 kcal Electronic energy + Delta-G solvation = -29611.924273 eV Core-core repulsion = 25761.365176 eV Total energy + Delta-G solvation = -3850.559098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03358 -40.21396 -37.64739 -36.40713 -34.95533 -33.58810 -33.39139 -31.70247 -30.45676 -30.07950 -29.40901 -26.04852 -24.95934 -23.96678 -23.66257 -22.28738 -22.05327 -21.39220 -21.05247 -19.12841 -18.38385 -17.54962 -17.24358 -16.90822 -16.10153 -15.89129 -15.37674 -14.65603 -14.57065 -14.41120 -14.34206 -14.10282 -13.80137 -13.66370 -13.50027 -13.24929 -13.19096 -12.83620 -12.16422 -12.07398 -11.93585 -11.90326 -11.71582 -11.61726 -11.25093 -11.03678 -10.84625 -10.76992 -10.72757 -10.64323 -10.17251 -10.02145 -9.84612 -9.64334 -9.63594 -9.30332 -8.90473 -8.74569 -8.57317 -8.35569 -6.80104 -5.70867 -2.96369 0.19476 0.56202 1.81694 2.50337 3.31859 3.47394 3.53728 3.54617 3.55864 4.04706 4.10311 4.18322 4.42736 4.56291 4.64304 4.70103 4.79132 4.89562 4.90456 5.03707 5.07705 5.16635 5.21197 5.35179 5.45117 5.56958 5.65024 5.66611 5.72809 5.77039 5.78750 5.80748 5.94349 6.01503 6.08029 6.17405 6.20150 6.25097 6.31488 6.33386 6.38115 6.41027 6.60518 6.64961 6.66988 6.95197 7.17129 7.76672 7.78831 7.88018 8.49040 8.60455 9.60655 10.18589 10.54293 11.52580 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008315 B = 0.004206 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.623892 B = 6656.280925 C = 8899.354107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.201 3.799 3 C 0.140 3.860 4 N -0.726 5.726 5 C -0.227 4.227 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.936 5.936 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 N -0.709 5.709 14 C 0.566 3.434 15 O -0.516 6.516 16 C -0.107 4.107 17 C -0.083 4.083 18 C -0.104 4.104 19 C -0.088 4.088 20 C -0.061 4.061 21 C -0.173 4.173 22 C 0.125 3.875 23 N -0.465 5.465 24 C 0.118 3.882 25 C -0.026 4.026 26 C -0.143 4.143 27 C -0.157 4.157 28 C -0.186 4.186 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.051 0.949 34 H 0.381 0.619 35 H 0.252 0.748 36 H 0.394 0.606 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.150 0.850 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 -19.421 -2.240 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.115 3.885 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.586 5.586 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 N -0.361 5.361 14 C 0.353 3.647 15 O -0.392 6.392 16 C -0.112 4.112 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.090 4.090 20 C -0.087 4.087 21 C -0.193 4.193 22 C -0.048 4.048 23 N -0.173 5.173 24 C -0.003 4.003 25 C -0.045 4.045 26 C -0.162 4.162 27 C -0.195 4.195 28 C -0.223 4.223 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.229 0.771 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.168 0.832 43 H 0.126 0.874 44 H 0.109 0.891 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.632 -18.487 -0.920 19.348 hybrid contribution -0.875 0.425 -1.556 1.835 sum 4.757 -18.062 -2.477 18.841 Atomic orbital electron populations 1.21989 0.93066 1.01350 1.04139 1.20085 0.93705 0.92567 0.82126 1.21103 0.98905 0.87726 0.91014 1.42257 1.61202 1.10488 1.23088 1.19282 1.24790 0.87595 1.04218 0.91306 1.24658 1.00857 0.98143 0.97474 1.69651 1.39953 1.35892 1.13138 0.86150 0.77454 0.85266 0.77607 1.20594 1.22048 1.22006 1.45887 1.06986 1.56371 1.26821 1.17827 0.82718 0.78924 0.85212 1.90763 1.54872 1.45500 1.48047 1.20074 0.93794 1.01203 0.96103 1.20999 0.99579 0.96024 0.93564 1.20837 0.93851 1.00209 0.97336 1.18939 0.94858 0.99718 0.95511 1.21500 0.96179 0.95711 0.95286 1.21924 0.94293 1.01812 1.01249 1.22982 1.00568 0.92437 0.88851 1.68027 1.15079 1.14761 1.19404 1.18762 0.88766 0.98070 0.94699 1.21229 0.94879 0.93949 0.94481 1.22527 1.04124 0.90229 0.99353 1.22903 0.92476 1.01965 1.02109 1.22978 0.97839 1.00020 1.01488 0.92868 0.90713 0.90912 0.95900 0.93098 0.78460 0.93831 0.77101 0.85048 0.84747 0.84281 0.84504 0.82345 0.83210 0.87399 0.89057 0.89549 0.89412 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.18 37.16 0.30 -1.85 16 2 C 0.20 3.27 0.55 -131.82 -0.07 3.20 16 3 C 0.14 3.00 4.83 -4.04 -0.02 2.98 16 4 N -0.73 -18.43 5.17 -59.91 -0.31 -18.74 16 5 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 6 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 7 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 8 N -0.94 -28.30 13.06 55.49 0.72 -27.57 16 9 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 N -0.71 -10.97 4.13 -48.53 -0.20 -11.17 16 14 C 0.57 9.86 5.03 -12.31 -0.06 9.80 16 15 O -0.52 -10.48 12.23 5.32 0.07 -10.41 16 16 C -0.11 -1.67 5.87 -105.00 -0.62 -2.28 16 17 C -0.08 -1.06 9.44 -39.57 -0.37 -1.44 16 18 C -0.10 -1.18 9.74 -39.58 -0.39 -1.57 16 19 C -0.09 -1.10 5.75 -106.73 -0.61 -1.72 16 20 C -0.06 -0.58 9.88 -39.21 -0.39 -0.96 16 21 C -0.17 -1.48 10.03 -39.75 -0.40 -1.88 16 22 C 0.13 1.30 11.15 -17.46 -0.19 1.10 16 23 N -0.47 -6.61 10.34 -10.98 -0.11 -6.72 16 24 C 0.12 1.75 6.60 -84.88 -0.56 1.19 16 25 C -0.03 -0.42 9.56 -38.68 -0.37 -0.78 16 26 C -0.14 -2.08 4.82 -90.62 -0.44 -2.52 16 27 C -0.16 -2.21 8.28 -26.73 -0.22 -2.43 16 28 C -0.19 -2.22 9.68 -26.73 -0.26 -2.48 16 29 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 30 H 0.07 1.25 6.86 -51.93 -0.36 0.90 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.05 1.22 5.96 -51.93 -0.31 0.91 16 34 H 0.38 9.86 6.35 -40.82 -0.26 9.60 16 35 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.39 5.12 6.48 -40.82 -0.26 4.85 16 37 H 0.13 1.38 6.36 -52.49 -0.33 1.05 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.15 2.53 7.60 -52.48 -0.40 2.13 16 43 H 0.11 1.59 8.06 -51.93 -0.42 1.17 16 44 H 0.09 1.36 5.13 -51.93 -0.27 1.10 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 47 H 0.09 0.99 7.20 -51.93 -0.37 0.62 16 LS Contribution 378.54 15.07 5.70 5.70 Total: -1.00 -34.94 378.54 -10.33 -45.27 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.27 Total: 14.41 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.91 Total: -8.89 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: 0.10 Total: -64.21 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.94 -10.33 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267861707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.269 kcal (2) G-P(sol) polarization free energy of solvation -34.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds