Wall clock time and date at job start Tue Mar 31 2020 22:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 N 1.46499 * 109.46922 * 299.99859 * 3 2 1 5 5 C 1.36935 * 120.00184 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00053 * 359.97438 * 5 4 3 7 7 C 1.38817 * 120.00241 * 179.97438 * 5 4 3 8 8 N 1.31616 * 119.99837 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47345 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47144 * 120.00224 * 9 7 5 12 12 H 1.48509 * 109.47230 * 240.00088 * 9 7 5 13 13 N 1.46502 * 109.47493 * 239.99407 * 2 1 3 14 14 C 1.34774 * 120.00322 * 174.49147 * 13 2 1 15 15 O 1.21548 * 119.99839 * 5.21866 * 14 13 2 16 16 C 1.47885 * 119.99965 * 185.21764 * 14 13 2 17 17 C 1.40573 * 119.70777 * 0.02562 * 16 14 13 18 18 C 1.35811 * 120.73307 * 179.97438 * 17 16 14 19 19 C 1.40546 * 119.98586 * 359.97438 * 18 17 16 20 20 C 1.40823 * 121.13458 * 179.97438 * 19 18 17 21 21 C 1.36550 * 118.19889 * 180.02562 * 20 19 18 22 22 C 1.39413 * 119.93763 * 359.97438 * 21 20 19 23 23 N 1.31025 * 121.71738 * 0.02803 * 22 21 20 24 24 C 1.33743 * 121.34717 * 359.95060 * 23 22 21 25 25 C 1.38411 * 119.70354 * 179.72473 * 16 14 13 26 26 C 1.53001 * 109.47033 * 119.99560 * 2 1 3 27 27 C 1.53009 * 117.49650 * 122.28002 * 26 2 1 28 28 C 1.52998 * 117.49707 * 53.66063 * 26 2 1 29 29 H 1.09001 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46879 * 60.00628 * 1 2 3 31 31 H 1.08997 * 109.46978 * 300.00134 * 1 2 3 32 32 H 1.08993 * 109.47359 * 59.99536 * 3 2 1 33 33 H 1.09000 * 109.47345 * 179.97438 * 3 2 1 34 34 H 0.97006 * 120.00238 * 359.97438 * 4 3 2 35 35 H 0.97001 * 119.99982 * 179.97438 * 8 7 5 36 36 H 0.97002 * 119.99777 * 354.50415 * 13 2 1 37 37 H 1.08002 * 119.62887 * 359.97438 * 17 16 14 38 38 H 1.08007 * 120.00386 * 179.97438 * 18 17 16 39 39 H 1.08000 * 120.89463 * 0.02562 * 20 19 18 40 40 H 1.07999 * 120.02948 * 180.02562 * 21 20 19 41 41 H 1.08008 * 119.14259 * 180.02562 * 22 21 20 42 42 H 1.08003 * 120.23233 * 0.02562 * 25 16 14 43 43 H 1.08996 * 115.55335 * 267.98276 * 26 2 1 44 44 H 1.08999 * 117.49870 * 359.97438 * 27 26 2 45 45 H 1.09001 * 117.49718 * 145.02242 * 27 26 2 46 46 H 1.09008 * 117.49893 * 214.97817 * 28 26 2 47 47 H 1.09000 * 117.50048 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1330 -1.1962 5 6 1.8829 3.4439 -1.4132 6 1 2.5038 3.9688 -0.7024 7 6 1.4206 4.0981 -2.5470 8 7 0.6644 3.4583 -3.4136 9 14 1.8719 5.8864 -2.8426 10 1 2.7246 6.3726 -1.7283 11 1 2.6149 6.0043 -4.1230 12 1 0.6343 6.7045 -2.9114 13 7 2.0184 -0.6907 -1.1961 14 6 3.3384 -0.7178 -1.4669 15 8 4.1315 -0.2524 -0.6721 16 6 3.8217 -1.3137 -2.7311 17 6 2.8990 -1.8497 -3.6462 18 6 3.3199 -2.4015 -4.8136 19 6 4.6915 -2.4404 -5.1179 20 6 5.1546 -3.0072 -6.3209 21 6 6.4999 -3.0138 -6.5552 22 6 7.3725 -2.4680 -5.6150 23 7 6.9385 -1.9414 -4.4965 24 6 5.6335 -1.9028 -4.2060 25 6 5.1782 -1.3330 -3.0056 26 6 2.0399 -0.7212 1.2493 27 6 2.9588 -1.9271 1.0432 28 6 1.5172 -2.1349 1.5117 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 0.9943 1.6615 -1.8349 35 1 0.3411 3.9155 -4.2056 36 1 1.3917 -1.1285 -1.7932 37 1 1.8437 -1.8223 -3.4183 38 1 2.6007 -2.8103 -5.5080 39 1 4.4645 -3.4254 -7.0387 40 1 6.8873 -3.4406 -7.4685 41 1 8.4341 -2.4796 -5.8136 42 1 5.8818 -0.9156 -2.3005 43 1 2.2293 -0.0859 2.1145 44 1 3.1996 -2.2070 0.0177 45 1 3.7529 -2.0853 1.7730 46 1 1.3629 -2.4299 2.5497 47 1 0.8096 -2.5511 0.7946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267861707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:52 Heat of formation + Delta-G solvation = 51.179091 kcal Electronic energy + Delta-G solvation = -29612.913655 eV Core-core repulsion = 25761.365176 eV Total energy + Delta-G solvation = -3851.548479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08904 -41.37177 -38.80933 -37.52842 -36.60951 -35.00125 -34.46558 -33.34552 -31.82269 -31.03260 -30.82496 -27.68044 -26.10143 -25.42551 -24.86254 -23.30300 -23.10993 -22.90258 -22.23412 -20.44198 -19.51178 -19.29620 -18.47498 -17.80235 -17.24008 -17.11287 -16.91706 -16.32338 -15.78693 -15.49325 -15.45227 -15.31713 -15.10838 -15.01696 -14.80797 -14.55520 -14.49542 -13.92135 -13.61784 -13.51970 -13.28304 -13.01130 -12.92590 -12.85317 -12.71989 -12.52250 -12.38252 -12.27346 -12.10369 -11.99282 -11.79209 -11.54692 -11.29627 -11.11113 -10.96738 -10.53768 -10.46974 -10.01148 -9.78671 -9.32636 -8.93672 -7.96361 -5.21550 -0.75214 -0.35053 0.88390 1.42149 1.43313 1.51256 1.53018 2.08622 2.39177 2.53370 2.96085 3.09831 3.29220 3.37326 3.54295 3.65179 3.68436 3.84114 3.94886 3.99613 4.00258 4.04020 4.09003 4.17442 4.28832 4.36396 4.38250 4.56860 4.57627 4.73560 4.80946 4.82040 4.87121 4.91028 4.96948 4.98249 5.07489 5.08858 5.17286 5.20925 5.29245 5.31400 5.32568 5.37488 5.46836 5.51474 5.68938 5.78887 6.27149 6.61713 6.91327 7.30711 7.34694 8.08729 8.38141 9.26817 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008315 B = 0.004206 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.623892 B = 6656.280925 C = 8899.354107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.209 3.791 3 C 0.141 3.859 4 N -0.728 5.728 5 C -0.243 4.243 6 H 0.060 0.940 7 C -0.067 4.067 8 N -0.960 5.960 9 Si 0.964 3.036 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.286 1.286 13 N -0.698 5.698 14 C 0.561 3.439 15 O -0.557 6.557 16 C -0.121 4.121 17 C -0.100 4.100 18 C -0.086 4.086 19 C -0.104 4.104 20 C -0.058 4.058 21 C -0.163 4.163 22 C 0.125 3.875 23 N -0.514 5.514 24 C 0.094 3.906 25 C -0.056 4.056 26 C -0.161 4.161 27 C -0.170 4.170 28 C -0.148 4.148 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.020 0.980 34 H 0.378 0.622 35 H 0.251 0.749 36 H 0.408 0.592 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.119 0.881 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -21.756 -4.472 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.123 3.877 3 C 0.014 3.986 4 N -0.372 5.372 5 C -0.375 4.375 6 H 0.078 0.922 7 C -0.259 4.259 8 N -0.611 5.611 9 Si 0.794 3.206 10 H -0.200 1.200 11 H -0.222 1.222 12 H -0.213 1.213 13 N -0.350 5.350 14 C 0.350 3.650 15 O -0.437 6.437 16 C -0.126 4.126 17 C -0.118 4.118 18 C -0.104 4.104 19 C -0.106 4.106 20 C -0.083 4.083 21 C -0.182 4.182 22 C -0.048 4.048 23 N -0.223 5.223 24 C -0.026 4.026 25 C -0.076 4.076 26 C -0.181 4.181 27 C -0.207 4.207 28 C -0.184 4.184 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.212 0.788 35 H 0.060 0.940 36 H 0.245 0.755 37 H 0.171 0.829 38 H 0.195 0.805 39 H 0.198 0.802 40 H 0.199 0.801 41 H 0.206 0.794 42 H 0.137 0.863 43 H 0.119 0.881 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.346 -20.844 -3.138 21.522 hybrid contribution -0.308 1.093 -0.949 1.480 sum 4.038 -19.751 -4.087 20.569 Atomic orbital electron populations 1.21929 0.91144 1.03470 1.03125 1.19915 0.94882 0.89571 0.83366 1.21126 0.97039 0.91127 0.89312 1.42297 1.61011 1.09707 1.24141 1.19548 1.24522 0.89155 1.04255 0.92168 1.25365 1.01249 1.01929 0.97387 1.69769 1.40783 1.37196 1.13391 0.85206 0.77283 0.80886 0.77220 1.20008 1.22214 1.21252 1.45782 1.06656 1.55764 1.26828 1.18231 0.82951 0.78321 0.85541 1.90730 1.55972 1.47448 1.49523 1.20049 0.94170 1.02291 0.96081 1.21207 0.99982 0.96799 0.93859 1.21322 0.94181 0.98001 0.96907 1.19284 0.95020 0.99901 0.96387 1.22005 0.97434 0.94475 0.94390 1.22410 0.93780 1.00114 1.01919 1.23704 1.02605 0.90594 0.87911 1.68001 1.15192 1.17263 1.21838 1.18836 0.89903 0.99031 0.94834 1.21121 0.94921 0.96057 0.95501 1.22414 1.06042 0.91340 0.98312 1.22859 0.94053 1.02214 1.01604 1.23083 0.95926 0.96325 1.03092 0.89102 0.92994 0.90599 0.96169 0.96244 0.78790 0.93991 0.75494 0.82938 0.80536 0.80206 0.80080 0.79433 0.86293 0.88076 0.90244 0.89889 0.87223 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.18 71.98 0.59 -3.31 16 2 C 0.21 6.92 0.55 3.60 0.00 6.92 16 3 C 0.14 6.36 4.83 86.38 0.42 6.78 16 4 N -0.73 -38.36 5.17 -343.46 -1.78 -40.14 16 5 C -0.24 -14.41 9.99 84.04 0.84 -13.57 16 6 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 7 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 8 N -0.96 -58.65 13.06 21.65 0.28 -58.37 16 9 Si 0.96 48.25 29.55 68.60 2.03 50.28 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 13 N -0.70 -22.15 4.13 -425.73 -1.76 -23.90 16 14 C 0.56 20.95 5.03 86.80 0.44 21.39 16 15 O -0.56 -24.91 12.23 -3.87 -0.05 -24.95 16 16 C -0.12 -4.05 5.87 -20.11 -0.12 -4.16 16 17 C -0.10 -2.52 9.44 22.28 0.21 -2.31 16 18 C -0.09 -1.77 9.74 22.27 0.22 -1.55 16 19 C -0.10 -2.44 5.75 -21.23 -0.12 -2.56 16 20 C -0.06 -0.87 9.88 22.51 0.22 -0.65 16 21 C -0.16 -2.16 10.03 22.16 0.22 -1.93 16 22 C 0.12 2.39 11.15 85.10 0.95 3.34 16 23 N -0.51 -15.12 10.34 -188.66 -1.95 -17.07 16 24 C 0.09 2.91 6.60 40.25 0.27 3.17 16 25 C -0.06 -2.00 9.56 22.85 0.22 -1.78 16 26 C -0.16 -4.73 4.82 -10.79 -0.05 -4.78 16 27 C -0.17 -4.84 8.28 30.60 0.25 -4.59 16 28 C -0.15 -3.17 9.68 30.59 0.30 -2.88 16 29 H 0.09 1.85 6.92 -2.39 -0.02 1.83 16 30 H 0.05 1.71 6.86 -2.38 -0.02 1.69 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.02 1.01 5.96 -2.39 -0.01 1.00 16 34 H 0.38 20.14 6.35 -92.70 -0.59 19.55 16 35 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.41 10.40 6.48 -92.71 -0.60 9.80 16 37 H 0.15 3.00 6.36 -2.91 -0.02 2.98 16 38 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 41 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.12 4.74 7.60 -2.91 -0.02 4.72 16 43 H 0.10 3.07 8.06 -2.39 -0.02 3.05 16 44 H 0.08 2.47 5.13 -2.39 -0.01 2.46 16 45 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 47 H 0.11 1.96 7.20 -2.39 -0.02 1.95 16 Total: -1.00 -81.88 378.54 1.92 -79.96 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: -0.17 Total: 40.16 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 5.31 Total: -5.97 kcal Atomic # 7 Polarization: -134.27 SS G_CDS: -5.20 Total: -139.48 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.95 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -81.88 1.92 -79.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267861707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.142 kcal (2) G-P(sol) polarization free energy of solvation -81.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds