Wall clock time and date at job start Tue Mar 31 2020 22:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47339 * 2 1 4 4 N 1.46501 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00022 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99687 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99924 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00345 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46988 * 90.00059 * 9 7 5 11 11 H 1.48494 * 109.47043 * 209.99911 * 9 7 5 12 12 H 1.48497 * 109.47138 * 330.00361 * 9 7 5 13 13 N 1.46501 * 109.47190 * 120.00432 * 2 1 3 14 14 C 1.34778 * 119.99701 * 304.32403 * 13 2 1 15 15 O 1.21547 * 120.00349 * 354.95540 * 14 13 2 16 16 C 1.47885 * 119.99912 * 174.96247 * 14 13 2 17 17 C 1.40573 * 119.70630 * 0.02562 * 16 14 13 18 18 C 1.35815 * 120.73560 * 180.02562 * 17 16 14 19 19 C 1.40548 * 119.98245 * 359.95768 * 18 17 16 20 20 C 1.40821 * 121.13367 * 180.02562 * 19 18 17 21 21 C 1.36551 * 118.19720 * 179.97438 * 20 19 18 22 22 C 1.39414 * 119.93955 * 359.97438 * 21 20 19 23 23 N 1.31019 * 121.71642 * 359.97438 * 22 21 20 24 24 C 1.33749 * 121.34851 * 0.02562 * 23 22 21 25 25 C 1.38398 * 119.70594 * 179.97438 * 16 14 13 26 26 C 1.53007 * 109.46803 * 240.00110 * 2 1 3 27 27 C 1.53002 * 117.49798 * 12.87890 * 26 2 1 28 28 C 1.53005 * 117.49704 * 304.21698 * 26 2 1 29 29 H 1.09000 * 109.46933 * 299.99868 * 1 2 3 30 30 H 1.08998 * 109.47504 * 59.99678 * 1 2 3 31 31 H 1.09002 * 109.47607 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47655 * 300.00071 * 3 2 1 33 33 H 1.09005 * 109.47425 * 60.00308 * 3 2 1 34 34 H 0.96996 * 120.00325 * 0.02562 * 4 3 2 35 35 H 0.96998 * 120.00546 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00004 * 124.31791 * 13 2 1 37 37 H 1.08003 * 119.63244 * 0.03230 * 17 16 14 38 38 H 1.07999 * 120.00904 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.89978 * 359.97438 * 20 19 18 40 40 H 1.08007 * 120.02895 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.14301 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.23788 * 0.25097 * 25 16 14 43 43 H 1.08996 * 115.54532 * 158.55476 * 26 2 1 44 44 H 1.09000 * 117.49950 * 359.97438 * 27 26 2 45 45 H 1.08998 * 117.49726 * 145.02089 * 27 26 2 46 46 H 1.08995 * 117.49933 * 214.97909 * 28 26 2 47 47 H 1.09004 * 117.49985 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1898 2.6282 -0.0013 6 1 3.6498 3.5635 -0.0009 7 6 5.5779 2.6281 -0.0013 8 7 6.2360 1.4883 -0.0012 9 14 6.5120 4.2459 -0.0015 10 1 6.7596 4.6746 1.3986 11 1 7.8095 4.0681 -0.7015 12 1 5.7095 5.2808 -0.7015 13 7 2.0183 -0.6907 1.1961 14 6 1.6224 -0.2833 2.4183 15 8 0.9346 0.7121 2.5339 16 6 2.0250 -1.0473 3.6188 17 6 2.8212 -2.1973 3.4780 18 6 3.2026 -2.9149 4.5662 19 6 2.8017 -2.5094 5.8508 20 6 3.1836 -3.2350 6.9957 21 6 2.7608 -2.7869 8.2143 22 6 1.9735 -1.6395 8.2989 23 7 1.6207 -0.9660 7.2319 24 6 2.0011 -1.3509 6.0088 25 6 1.6155 -0.6232 4.8709 26 6 2.0399 -0.7213 -1.2493 27 6 1.0280 -1.0128 -2.3593 28 6 1.5558 -2.1534 -1.4853 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6023 -0.0013 35 1 7.2059 1.4882 -0.0009 36 1 2.6265 -1.4413 1.1084 37 1 3.1332 -2.5136 2.4936 38 1 3.8141 -3.7968 4.4445 39 1 3.7943 -4.1218 6.9121 40 1 3.0361 -3.3210 9.1118 41 1 1.6459 -1.2968 9.2694 42 1 1.0012 0.2593 4.9723 43 1 3.0596 -0.4789 -1.5487 44 1 -0.0011 -0.6911 -2.1993 45 1 1.3820 -0.9626 -3.3889 46 1 2.2568 -2.8531 -1.9404 47 1 0.8737 -2.5816 -0.7507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267861708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:57 Heat of formation + Delta-G solvation = 66.748141 kcal Electronic energy + Delta-G solvation = -29225.114086 eV Core-core repulsion = 25374.240731 eV Total energy + Delta-G solvation = -3850.873355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03006 -40.04334 -38.03690 -36.66371 -34.66335 -33.65178 -33.48587 -31.62814 -30.50825 -30.12528 -29.43111 -25.93420 -25.01068 -24.02001 -23.49124 -22.38780 -22.18865 -22.04600 -20.77787 -18.88740 -18.40739 -17.58488 -17.13957 -16.95022 -16.38223 -15.60599 -15.21664 -14.84314 -14.62076 -14.54000 -14.38854 -14.18070 -13.97913 -13.74780 -13.56855 -13.24026 -13.19495 -12.70624 -12.34425 -12.07964 -11.98809 -11.94320 -11.75207 -11.66321 -11.35367 -11.05339 -10.82697 -10.77271 -10.75053 -10.67787 -10.18927 -10.06064 -9.82570 -9.68929 -9.63379 -9.40153 -8.95302 -8.75707 -8.59180 -8.39697 -6.80685 -5.70694 -2.96428 0.14809 0.51607 1.76986 2.45687 3.25303 3.46301 3.48317 3.53531 3.54830 4.01563 4.06323 4.17775 4.38584 4.52072 4.65551 4.66049 4.75634 4.77523 4.87077 5.00148 5.06109 5.10076 5.19251 5.30445 5.37843 5.47046 5.60572 5.64789 5.66610 5.72088 5.75785 5.81183 5.90485 5.97895 6.06278 6.14158 6.20438 6.23505 6.26678 6.30045 6.33618 6.46983 6.56293 6.62446 6.70881 6.93728 7.13651 7.72373 7.78152 7.88467 8.49109 8.55794 9.60630 10.18637 10.54503 11.52630 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.003618 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.016642 B = 7736.981647 C = 9529.278365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.203 3.797 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.229 4.229 6 H 0.069 0.931 7 C -0.016 4.016 8 N -0.937 5.937 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.282 1.282 13 N -0.702 5.702 14 C 0.563 3.437 15 O -0.526 6.526 16 C -0.106 4.106 17 C -0.084 4.084 18 C -0.103 4.103 19 C -0.088 4.088 20 C -0.061 4.061 21 C -0.173 4.173 22 C 0.126 3.874 23 N -0.465 5.465 24 C 0.117 3.883 25 C -0.026 4.026 26 C -0.150 4.150 27 C -0.172 4.172 28 C -0.184 4.184 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.045 0.955 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.397 0.603 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.123 0.877 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -15.875 9.453 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.117 3.883 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.360 4.360 6 H 0.087 0.913 7 C -0.211 4.211 8 N -0.587 5.587 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.352 5.352 14 C 0.350 3.650 15 O -0.404 6.404 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.091 4.091 20 C -0.087 4.087 21 C -0.192 4.192 22 C -0.048 4.048 23 N -0.173 5.173 24 C -0.004 4.004 25 C -0.046 4.046 26 C -0.169 4.169 27 C -0.209 4.209 28 C -0.221 4.221 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.233 0.767 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.177 0.823 42 H 0.168 0.832 43 H 0.141 0.859 44 H 0.118 0.882 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.674 -14.188 9.447 20.112 hybrid contribution 1.877 -0.541 -0.074 1.954 sum -8.797 -14.729 9.373 19.549 Atomic orbital electron populations 1.22291 0.94601 1.01686 1.03739 1.20052 0.93148 0.93174 0.81901 1.21074 0.86457 0.91634 0.99274 1.42227 0.99188 1.06154 1.89425 1.19247 0.89024 0.86242 1.41531 0.91342 1.24660 0.96278 0.96665 1.03495 1.69640 1.06579 1.23779 1.58665 0.86217 0.79398 0.83330 0.77477 1.21886 1.21903 1.20818 1.45818 1.48952 1.35409 1.05046 1.17971 0.80184 0.84021 0.82855 1.90717 1.38742 1.24792 1.86130 1.20046 1.00340 0.96641 0.94067 1.21024 0.95850 0.93743 0.99622 1.20848 1.00153 1.00412 0.90803 1.18947 0.98927 0.96254 0.94928 1.21504 0.96886 0.98603 0.91679 1.21933 1.00020 0.98538 0.98753 1.22987 0.93286 0.91183 0.97339 1.68028 1.20775 1.30397 0.98084 1.18768 0.96407 0.93296 0.91878 1.21233 0.96194 0.98247 0.88912 1.22573 1.00802 0.96987 0.96534 1.23059 0.99305 1.02675 0.95852 1.22961 1.04026 0.91528 1.03551 0.90093 0.91454 0.92923 0.95803 0.93672 0.78483 0.93768 0.76741 0.84928 0.84697 0.84255 0.84477 0.82319 0.83180 0.85931 0.88236 0.88869 0.88934 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 6.98 37.16 0.26 -2.16 16 2 C 0.20 3.35 0.54 -131.82 -0.07 3.28 16 3 C 0.14 3.10 5.03 -4.05 -0.02 3.08 16 4 N -0.73 -18.49 5.04 -59.91 -0.30 -18.79 16 5 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 6 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 7 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 8 N -0.94 -28.28 13.06 55.49 0.72 -27.56 16 9 Si 0.90 23.10 29.55 -169.99 -5.02 18.07 16 10 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.70 -11.12 4.67 -48.53 -0.23 -11.35 16 14 C 0.56 9.83 7.18 -12.31 -0.09 9.74 16 15 O -0.53 -10.73 12.53 5.32 0.07 -10.66 16 16 C -0.11 -1.61 5.87 -105.01 -0.62 -2.23 16 17 C -0.08 -1.03 9.44 -39.57 -0.37 -1.41 16 18 C -0.10 -1.12 9.74 -39.58 -0.39 -1.51 16 19 C -0.09 -1.05 5.75 -106.73 -0.61 -1.67 16 20 C -0.06 -0.54 9.88 -39.21 -0.39 -0.93 16 21 C -0.17 -1.39 10.03 -39.75 -0.40 -1.79 16 22 C 0.13 1.24 11.15 -17.46 -0.19 1.04 16 23 N -0.47 -6.35 10.34 -10.98 -0.11 -6.46 16 24 C 0.12 1.67 6.60 -84.87 -0.56 1.11 16 25 C -0.03 -0.41 9.56 -38.69 -0.37 -0.78 16 26 C -0.15 -2.25 4.84 -90.61 -0.44 -2.69 16 27 C -0.17 -2.12 9.64 -26.69 -0.26 -2.37 16 28 C -0.18 -2.13 9.83 -26.69 -0.26 -2.39 16 29 H 0.08 1.35 6.03 -51.93 -0.31 1.03 16 30 H 0.07 0.91 6.78 -51.93 -0.35 0.55 16 31 H 0.05 0.67 6.98 -51.93 -0.36 0.31 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 1.09 6.32 -51.93 -0.33 0.76 16 34 H 0.38 9.89 6.62 -40.82 -0.27 9.62 16 35 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.40 5.50 6.48 -40.82 -0.26 5.24 16 37 H 0.13 1.36 6.36 -52.48 -0.33 1.02 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.15 2.44 7.60 -52.48 -0.40 2.04 16 43 H 0.12 2.21 7.08 -51.93 -0.37 1.84 16 44 H 0.10 1.14 5.88 -51.93 -0.31 0.84 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.09 0.99 7.34 -51.93 -0.38 0.61 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -34.76 380.31 -10.35 -45.11 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -6.18 Total: 14.88 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -5.02 Total: -8.97 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.08 Total: -64.16 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.76 -10.35 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267861708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.857 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds