Wall clock time and date at job start Tue Mar 31 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47339 * 2 1 4 4 N 1.46501 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00022 * 179.97438 * 4 3 2 6 6 H 1.08000 * 119.99687 * 0.02562 * 5 4 3 7 7 C 1.38810 * 119.99924 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00345 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00014 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46988 * 90.00059 * 9 7 5 11 11 H 1.48494 * 109.47043 * 209.99911 * 9 7 5 12 12 H 1.48497 * 109.47138 * 330.00361 * 9 7 5 13 13 N 1.46501 * 109.47190 * 120.00432 * 2 1 3 14 14 C 1.34778 * 119.99701 * 304.32403 * 13 2 1 15 15 O 1.21547 * 120.00349 * 354.95540 * 14 13 2 16 16 C 1.47885 * 119.99912 * 174.96247 * 14 13 2 17 17 C 1.40573 * 119.70630 * 0.02562 * 16 14 13 18 18 C 1.35815 * 120.73560 * 180.02562 * 17 16 14 19 19 C 1.40548 * 119.98245 * 359.95768 * 18 17 16 20 20 C 1.40821 * 121.13367 * 180.02562 * 19 18 17 21 21 C 1.36551 * 118.19720 * 179.97438 * 20 19 18 22 22 C 1.39414 * 119.93955 * 359.97438 * 21 20 19 23 23 N 1.31019 * 121.71642 * 359.97438 * 22 21 20 24 24 C 1.33749 * 121.34851 * 0.02562 * 23 22 21 25 25 C 1.38398 * 119.70594 * 179.97438 * 16 14 13 26 26 C 1.53007 * 109.46803 * 240.00110 * 2 1 3 27 27 C 1.53002 * 117.49798 * 12.87890 * 26 2 1 28 28 C 1.53005 * 117.49704 * 304.21698 * 26 2 1 29 29 H 1.09000 * 109.46933 * 299.99868 * 1 2 3 30 30 H 1.08998 * 109.47504 * 59.99678 * 1 2 3 31 31 H 1.09002 * 109.47607 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47655 * 300.00071 * 3 2 1 33 33 H 1.09005 * 109.47425 * 60.00308 * 3 2 1 34 34 H 0.96996 * 120.00325 * 0.02562 * 4 3 2 35 35 H 0.96998 * 120.00546 * 180.02562 * 8 7 5 36 36 H 0.97001 * 120.00004 * 124.31791 * 13 2 1 37 37 H 1.08003 * 119.63244 * 0.03230 * 17 16 14 38 38 H 1.07999 * 120.00904 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.89978 * 359.97438 * 20 19 18 40 40 H 1.08007 * 120.02895 * 179.97438 * 21 20 19 41 41 H 1.08005 * 119.14301 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.23788 * 0.25097 * 25 16 14 43 43 H 1.08996 * 115.54532 * 158.55476 * 26 2 1 44 44 H 1.09000 * 117.49950 * 359.97438 * 27 26 2 45 45 H 1.08998 * 117.49726 * 145.02089 * 27 26 2 46 46 H 1.08995 * 117.49933 * 214.97909 * 28 26 2 47 47 H 1.09004 * 117.49985 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1898 2.6282 -0.0013 6 1 3.6498 3.5635 -0.0009 7 6 5.5779 2.6281 -0.0013 8 7 6.2360 1.4883 -0.0012 9 14 6.5120 4.2459 -0.0015 10 1 6.7596 4.6746 1.3986 11 1 7.8095 4.0681 -0.7015 12 1 5.7095 5.2808 -0.7015 13 7 2.0183 -0.6907 1.1961 14 6 1.6224 -0.2833 2.4183 15 8 0.9346 0.7121 2.5339 16 6 2.0250 -1.0473 3.6188 17 6 2.8212 -2.1973 3.4780 18 6 3.2026 -2.9149 4.5662 19 6 2.8017 -2.5094 5.8508 20 6 3.1836 -3.2350 6.9957 21 6 2.7608 -2.7869 8.2143 22 6 1.9735 -1.6395 8.2989 23 7 1.6207 -0.9660 7.2319 24 6 2.0011 -1.3509 6.0088 25 6 1.6155 -0.6232 4.8709 26 6 2.0399 -0.7213 -1.2493 27 6 1.0280 -1.0128 -2.3593 28 6 1.5558 -2.1534 -1.4853 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6023 -0.0013 35 1 7.2059 1.4882 -0.0009 36 1 2.6265 -1.4413 1.1084 37 1 3.1332 -2.5136 2.4936 38 1 3.8141 -3.7968 4.4445 39 1 3.7943 -4.1218 6.9121 40 1 3.0361 -3.3210 9.1118 41 1 1.6459 -1.2968 9.2694 42 1 1.0012 0.2593 4.9723 43 1 3.0596 -0.4789 -1.5487 44 1 -0.0011 -0.6911 -2.1993 45 1 1.3820 -0.9626 -3.3889 46 1 2.2568 -2.8531 -1.9404 47 1 0.8737 -2.5816 -0.7507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267861708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:56 Heat of formation + Delta-G solvation = 43.986455 kcal Electronic energy + Delta-G solvation = -29226.101106 eV Core-core repulsion = 25374.240731 eV Total energy + Delta-G solvation = -3851.860376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00546 -41.25480 -39.21803 -37.67954 -36.38038 -35.09873 -34.46827 -33.23798 -31.95471 -31.03864 -30.73722 -27.62515 -26.19860 -24.94886 -24.83138 -24.09278 -23.17373 -23.08335 -21.89377 -20.23946 -19.50132 -19.26622 -18.50106 -17.80880 -17.40774 -16.92989 -16.69122 -16.26903 -16.06286 -15.64230 -15.49219 -15.29399 -15.25995 -14.98067 -14.87304 -14.56426 -14.24437 -13.92000 -13.82565 -13.68780 -13.24467 -13.12593 -12.91823 -12.83267 -12.72241 -12.51621 -12.44458 -12.23311 -12.06069 -12.01514 -11.77024 -11.54871 -11.26152 -11.08474 -10.94241 -10.67519 -10.48670 -10.06019 -9.79398 -9.33037 -8.95659 -7.96588 -5.22412 -0.76199 -0.35580 0.87750 1.42257 1.44371 1.49052 1.52425 2.02748 2.32990 2.53684 3.00727 3.09837 3.29220 3.36314 3.53880 3.59066 3.68623 3.83470 3.89698 3.94388 3.96996 4.04240 4.08237 4.17439 4.25214 4.28969 4.45671 4.57254 4.60752 4.73342 4.79158 4.85165 4.86018 4.88704 4.95648 4.98956 5.03613 5.07778 5.11927 5.18077 5.28715 5.32262 5.34340 5.44039 5.47166 5.51203 5.64486 5.78550 6.26309 6.59967 6.91344 7.24313 7.33696 8.07894 8.37168 9.26378 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.003618 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.016642 B = 7736.981647 C = 9529.278365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.211 3.789 3 C 0.145 3.855 4 N -0.728 5.728 5 C -0.246 4.246 6 H 0.062 0.938 7 C -0.067 4.067 8 N -0.961 5.961 9 Si 0.966 3.034 10 H -0.293 1.293 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.555 3.445 15 O -0.568 6.568 16 C -0.120 4.120 17 C -0.100 4.100 18 C -0.084 4.084 19 C -0.103 4.103 20 C -0.057 4.057 21 C -0.162 4.162 22 C 0.125 3.875 23 N -0.513 5.513 24 C 0.093 3.907 25 C -0.054 4.054 26 C -0.176 4.176 27 C -0.163 4.163 28 C -0.154 4.154 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.014 0.986 34 H 0.378 0.622 35 H 0.252 0.748 36 H 0.408 0.592 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.189 0.811 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -19.194 10.317 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.125 3.875 3 C 0.017 3.983 4 N -0.371 5.371 5 C -0.378 4.378 6 H 0.080 0.920 7 C -0.259 4.259 8 N -0.612 5.612 9 Si 0.796 3.204 10 H -0.220 1.220 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.343 5.343 14 C 0.343 3.657 15 O -0.449 6.449 16 C -0.125 4.125 17 C -0.118 4.118 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.083 4.083 21 C -0.182 4.182 22 C -0.048 4.048 23 N -0.222 5.222 24 C -0.026 4.026 25 C -0.074 4.074 26 C -0.195 4.195 27 C -0.200 4.200 28 C -0.190 4.190 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.032 0.968 34 H 0.211 0.789 35 H 0.060 0.940 36 H 0.245 0.755 37 H 0.169 0.831 38 H 0.195 0.805 39 H 0.198 0.802 40 H 0.199 0.801 41 H 0.206 0.794 42 H 0.139 0.861 43 H 0.107 0.893 44 H 0.129 0.871 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.871 -17.526 10.294 22.595 hybrid contribution 1.607 0.470 -0.165 1.683 sum -8.263 -17.056 10.129 21.489 Atomic orbital electron populations 1.22210 0.92876 1.03152 1.03146 1.19873 0.94237 0.90277 0.83085 1.21099 0.84391 0.95390 0.97373 1.42269 1.00664 1.05072 1.89114 1.19545 0.89755 0.87171 1.41341 0.92040 1.25392 0.96962 0.99892 1.03699 1.69768 1.06560 1.25427 1.59448 0.85246 0.78122 0.79843 0.77209 1.22005 1.21372 1.19879 1.45777 1.48740 1.35303 1.04506 1.18476 0.79539 0.83709 0.83935 1.90688 1.40677 1.26698 1.86801 1.19963 1.01887 0.97950 0.92668 1.21198 0.96135 0.93149 1.01346 1.21319 0.98644 1.00636 0.89664 1.19285 0.98623 0.95783 0.96807 1.22005 0.96460 0.99180 0.90632 1.22416 0.98082 0.97415 1.00255 1.23703 0.92308 0.91319 0.97422 1.68003 1.22951 1.32453 0.98818 1.18836 0.97657 0.94476 0.91665 1.21126 0.97484 0.98408 0.90364 1.22238 0.99908 1.00408 0.96970 1.23194 0.98994 1.02303 0.95505 1.23057 1.03357 0.89862 1.02765 0.92567 0.90168 0.90299 0.96181 0.96779 0.78887 0.93964 0.75514 0.83061 0.80492 0.80203 0.80105 0.79434 0.86112 0.89311 0.87053 0.88149 0.87440 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 6.98 71.98 0.50 -4.09 16 2 C 0.21 7.18 0.54 3.60 0.00 7.18 16 3 C 0.15 6.63 5.03 86.38 0.43 7.06 16 4 N -0.73 -38.86 5.04 -343.46 -1.73 -40.59 16 5 C -0.25 -14.69 9.99 84.03 0.84 -13.85 16 6 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 8 N -0.96 -59.00 13.06 21.65 0.28 -58.71 16 9 Si 0.97 48.26 29.55 68.60 2.03 50.29 16 10 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.69 -22.80 4.67 -425.73 -1.99 -24.79 16 14 C 0.56 20.86 7.18 86.80 0.62 21.48 16 15 O -0.57 -25.52 12.53 -3.86 -0.05 -25.56 16 16 C -0.12 -3.90 5.87 -20.11 -0.12 -4.01 16 17 C -0.10 -2.42 9.44 22.28 0.21 -2.21 16 18 C -0.08 -1.63 9.74 22.27 0.22 -1.42 16 19 C -0.10 -2.28 5.75 -21.23 -0.12 -2.40 16 20 C -0.06 -0.79 9.88 22.51 0.22 -0.57 16 21 C -0.16 -1.96 10.03 22.16 0.22 -1.74 16 22 C 0.13 2.25 11.15 85.10 0.95 3.19 16 23 N -0.51 -14.39 10.34 -188.65 -1.95 -16.34 16 24 C 0.09 2.77 6.60 40.25 0.27 3.03 16 25 C -0.05 -1.85 9.56 22.85 0.22 -1.63 16 26 C -0.18 -5.23 4.84 -10.79 -0.05 -5.28 16 27 C -0.16 -3.69 9.64 30.62 0.30 -3.40 16 28 C -0.15 -3.17 9.83 30.62 0.30 -2.87 16 29 H 0.06 1.97 6.03 -2.39 -0.01 1.96 16 30 H 0.08 2.12 6.78 -2.39 -0.02 2.10 16 31 H 0.08 1.90 6.98 -2.39 -0.02 1.88 16 32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.01 0.74 6.32 -2.38 -0.02 0.73 16 34 H 0.38 20.46 6.62 -92.71 -0.61 19.84 16 35 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.41 11.40 6.48 -92.71 -0.60 10.80 16 37 H 0.15 2.92 6.36 -2.91 -0.02 2.90 16 38 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 39 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 40 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 41 H 0.19 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.12 4.62 7.60 -2.91 -0.02 4.60 16 43 H 0.09 3.29 7.08 -2.39 -0.02 3.27 16 44 H 0.11 2.27 5.88 -2.39 -0.01 2.26 16 45 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.11 1.93 7.34 -2.38 -0.02 1.91 16 Total: -1.00 -81.88 380.31 1.88 -80.01 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.19 Total: 40.71 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 5.48 Total: -5.00 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -5.39 Total: -140.44 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -81.88 1.88 -80.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267861708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.993 kcal (2) G-P(sol) polarization free energy of solvation -81.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds