Wall clock time and date at job start Tue Mar 31 2020 22:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46990 * 2 1 4 4 C 1.38354 * 120.35067 * 270.02192 * 3 2 1 5 5 N 1.31927 * 121.07911 * 179.97438 * 4 3 2 6 6 C 1.31699 * 121.87969 * 359.70211 * 5 4 3 7 7 C 1.39520 * 120.56566 * 0.58579 * 6 5 4 8 8 C 1.47835 * 120.55930 * 179.69823 * 7 6 5 9 9 O 1.21547 * 120.00415 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99807 * 359.72776 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47276 * 180.02562 * 11 10 8 13 13 C 1.38238 * 119.99580 * 269.72877 * 12 11 10 14 14 C 1.38231 * 119.99652 * 179.76867 * 13 12 11 15 15 C 1.38233 * 120.00172 * 0.47867 * 14 13 12 16 16 C 1.50699 * 120.00374 * 179.77297 * 15 14 13 17 17 N 1.46504 * 109.47243 * 270.02587 * 16 15 14 18 18 C 1.36935 * 120.00278 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00201 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99870 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47412 * 59.99507 * 22 20 18 24 24 H 1.48503 * 109.46851 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46970 * 299.99473 * 22 20 18 26 26 C 1.38233 * 119.99854 * 359.79444 * 15 14 13 27 27 C 1.38228 * 120.00141 * 359.95682 * 26 15 14 28 28 C 1.38360 * 120.34734 * 90.00206 * 3 2 1 29 29 H 1.08997 * 109.47226 * 299.99843 * 1 2 3 30 30 H 1.09001 * 109.47104 * 59.99436 * 1 2 3 31 31 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46788 * 240.00313 * 2 1 3 33 33 H 1.08993 * 109.46914 * 119.99955 * 2 1 3 34 34 H 1.07999 * 119.45785 * 359.95901 * 4 3 2 35 35 H 1.07998 * 119.71512 * 180.28537 * 6 5 4 36 36 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 38 38 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 39 39 H 1.08002 * 120.00563 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.00172 * 180.25014 * 14 13 12 41 41 H 1.09004 * 109.47388 * 30.02084 * 16 15 14 42 42 H 1.08992 * 109.47574 * 150.02291 * 16 15 14 43 43 H 0.96999 * 119.99644 * 359.97438 * 17 16 15 44 44 H 0.96996 * 119.99956 * 180.02562 * 21 20 18 45 45 H 1.08004 * 119.99700 * 179.97438 * 26 15 14 46 46 H 1.08001 * 120.00298 * 179.97438 * 27 26 15 47 47 H 1.07999 * 120.85636 * 0.04294 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2649 2.0801 -1.1939 5 7 2.7041 3.3240 -1.2107 6 6 2.9351 3.9951 -0.1013 7 6 2.7312 3.3994 1.1438 8 6 2.9969 4.1507 2.3890 9 8 2.8153 3.6220 3.4683 10 7 3.4452 5.4203 2.3274 11 6 3.7079 6.1650 3.5613 12 6 4.1960 7.5489 3.2186 13 6 5.5493 7.7866 3.0669 14 6 5.9966 9.0550 2.7478 15 6 5.0915 10.0879 2.5902 16 6 5.5796 11.4718 2.2474 17 7 5.8424 12.2166 3.4813 18 6 6.2979 13.5064 3.4187 19 1 6.4638 13.9747 2.4598 20 6 6.5464 14.2122 4.5879 21 7 6.3438 13.6418 5.7567 22 14 7.1671 15.9721 4.5025 23 1 6.1778 16.8114 3.7801 24 1 7.3518 16.4990 5.8785 25 1 8.4647 16.0048 3.7810 26 6 3.7387 9.8514 2.7475 27 6 3.2909 8.5819 3.0615 28 6 2.2654 2.0799 1.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0842 1.5679 -2.1274 35 1 3.2900 5.0136 -0.1558 36 1 3.5938 5.8409 1.4661 37 1 2.7897 6.2379 4.1442 38 1 4.4681 5.6452 4.1445 39 1 6.2568 6.9807 3.1943 40 1 7.0536 9.2400 2.6252 41 1 6.4977 11.3993 1.6643 42 1 4.8191 11.9913 1.6645 43 1 5.6938 11.7960 4.3426 44 1 6.5171 14.1351 6.5736 45 1 3.0316 10.6585 2.6248 46 1 2.2340 8.3972 3.1848 47 1 2.0927 1.5892 2.1405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267936684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:11 Heat of formation + Delta-G solvation = 24.170793 kcal Electronic energy + Delta-G solvation = -26792.402528 eV Core-core repulsion = 22939.682881 eV Total energy + Delta-G solvation = -3852.719647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11694 -39.72616 -38.96771 -35.69476 -35.28217 -34.38161 -32.84593 -32.02426 -30.75331 -30.51707 -29.92104 -27.24348 -25.24714 -24.82856 -23.87626 -22.60527 -22.52506 -22.31478 -20.71832 -20.44974 -18.31083 -17.40465 -17.31010 -17.10266 -15.92990 -15.85710 -15.62490 -15.21330 -15.02658 -14.77616 -14.56762 -14.37662 -14.28786 -13.93794 -13.55747 -13.40613 -13.26639 -13.24316 -13.14841 -12.89355 -12.72251 -12.36995 -12.08882 -12.06472 -11.87611 -11.58462 -11.10690 -10.87308 -10.75229 -10.68091 -10.55352 -10.27449 -10.10980 -9.87231 -9.78720 -9.56456 -9.33712 -8.91908 -8.72364 -8.48297 -6.96736 -5.78393 -3.08572 0.17908 0.70534 1.34623 1.60840 2.48518 2.87718 3.38065 3.42953 3.47164 3.48478 3.78920 3.96188 4.11154 4.28793 4.36204 4.44275 4.52354 4.59466 4.61698 4.78954 4.82787 4.91412 4.96762 5.15430 5.19561 5.28756 5.33631 5.34822 5.38770 5.50379 5.54665 5.57022 5.66817 5.70934 5.74475 5.81628 6.02147 6.08883 6.12161 6.13736 6.17496 6.45869 6.56048 6.59635 6.65459 7.07222 7.13116 7.19082 7.36893 7.66435 7.82265 8.39216 9.50768 10.06439 10.42185 11.43926 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033206 B = 0.001585 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.024938 B =17666.588088 C =18098.608010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.142 4.142 4 C 0.123 3.877 5 N -0.482 5.482 6 C 0.130 3.870 7 C -0.182 4.182 8 C 0.562 3.438 9 O -0.535 6.535 10 N -0.717 5.717 11 C 0.166 3.834 12 C -0.127 4.127 13 C -0.103 4.103 14 C -0.106 4.106 15 C -0.062 4.062 16 C 0.184 3.816 17 N -0.726 5.726 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.106 4.106 27 C -0.103 4.103 28 C -0.016 4.016 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.402 0.598 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 -28.225 -13.194 32.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.144 4.144 4 C -0.034 4.034 5 N -0.190 5.190 6 C -0.029 4.029 7 C -0.187 4.187 8 C 0.348 3.652 9 O -0.413 6.413 10 N -0.368 5.368 11 C 0.044 3.956 12 C -0.128 4.128 13 C -0.121 4.121 14 C -0.125 4.125 15 C -0.063 4.063 16 C 0.057 3.943 17 N -0.371 5.371 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.042 4.042 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.238 0.762 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.306 -27.999 -13.250 32.645 hybrid contribution 0.292 0.824 0.776 1.169 sum -10.014 -27.175 -12.474 31.533 Atomic orbital electron populations 1.21780 0.94238 1.02222 1.02444 1.20502 0.96488 0.91215 1.03645 1.20953 1.01321 0.98360 0.93722 1.22924 0.92495 0.90252 0.97754 1.67726 1.11880 1.08496 1.30885 1.23007 0.93562 0.99491 0.86822 1.21012 1.06338 0.96544 0.94776 1.18041 0.77260 0.81512 0.88400 1.90793 1.52201 1.68670 1.29613 1.46066 1.67066 1.13230 1.10476 1.20212 1.01377 0.88255 0.85749 1.19649 0.93954 0.94354 1.04856 1.20997 0.94594 0.97096 0.99433 1.21130 0.99928 0.92202 0.99213 1.20406 0.93249 0.96444 0.96200 1.19714 0.97248 0.86420 0.90945 1.42324 1.79962 1.12525 1.02278 1.19196 1.36574 0.89097 0.92680 0.91103 1.24761 1.02238 0.98548 0.95221 1.69666 1.54743 1.36942 0.96589 0.86243 0.78706 0.84553 0.76513 1.21213 1.21644 1.21205 1.21129 0.95623 0.96487 0.99232 1.20993 0.98986 0.92690 0.99458 1.21633 0.91239 0.92300 0.99062 0.92388 0.92390 0.91903 0.90305 0.90410 0.82287 0.82345 0.76235 0.90417 0.90400 0.86273 0.85754 0.95361 0.95364 0.78049 0.93394 0.85755 0.86279 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.90 37.16 0.37 -0.22 16 2 C -0.08 -0.33 6.09 -27.88 -0.17 -0.50 16 3 C -0.14 -0.91 5.15 -104.53 -0.54 -1.45 16 4 C 0.12 0.85 10.85 -17.47 -0.19 0.66 16 5 N -0.48 -4.28 10.35 -12.91 -0.13 -4.41 16 6 C 0.13 1.07 10.71 -17.13 -0.18 0.88 16 7 C -0.18 -1.64 5.89 -104.82 -0.62 -2.26 16 8 C 0.56 6.06 7.78 -12.33 -0.10 5.97 16 9 O -0.54 -7.54 16.42 5.32 0.09 -7.46 16 10 N -0.72 -6.65 5.50 -62.43 -0.34 -6.99 16 11 C 0.17 1.75 5.80 -5.20 -0.03 1.72 16 12 C -0.13 -1.51 5.25 -104.63 -0.55 -2.06 16 13 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 14 C -0.11 -1.60 9.70 -39.59 -0.38 -1.98 16 15 C -0.06 -1.04 5.25 -104.63 -0.55 -1.59 16 16 C 0.18 3.68 6.38 -5.19 -0.03 3.65 16 17 N -0.73 -18.45 5.59 -61.09 -0.34 -18.79 16 18 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 22 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 C -0.11 -1.59 9.70 -39.59 -0.38 -1.98 16 27 C -0.10 -1.30 9.70 -39.59 -0.38 -1.68 16 28 C -0.02 -0.13 9.39 -38.87 -0.37 -0.50 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.16 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.16 0.97 6.42 -52.49 -0.34 0.63 16 36 H 0.40 2.97 6.53 -40.82 -0.27 2.71 16 37 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 43 H 0.39 10.47 7.66 -40.82 -0.31 10.15 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.15 1.16 7.74 -52.49 -0.41 0.75 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -33.61 402.26 -10.47 -44.08 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.77 Total: 8.20 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -4.74 Total: -10.43 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.09 Total: -57.73 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.61 -10.47 -44.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267936684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.251 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds