Wall clock time and date at job start Tue Mar 31 2020 22:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46990 * 2 1 4 4 C 1.38354 * 120.35067 * 270.02192 * 3 2 1 5 5 N 1.31927 * 121.07911 * 179.97438 * 4 3 2 6 6 C 1.31699 * 121.87969 * 359.70211 * 5 4 3 7 7 C 1.39520 * 120.56566 * 0.58579 * 6 5 4 8 8 C 1.47835 * 120.55930 * 179.69823 * 7 6 5 9 9 O 1.21547 * 120.00415 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99807 * 359.72776 * 8 7 6 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47276 * 180.02562 * 11 10 8 13 13 C 1.38238 * 119.99580 * 269.72877 * 12 11 10 14 14 C 1.38231 * 119.99652 * 179.76867 * 13 12 11 15 15 C 1.38233 * 120.00172 * 0.47867 * 14 13 12 16 16 C 1.50699 * 120.00374 * 179.77297 * 15 14 13 17 17 N 1.46504 * 109.47243 * 270.02587 * 16 15 14 18 18 C 1.36935 * 120.00278 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00201 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99870 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47412 * 59.99507 * 22 20 18 24 24 H 1.48503 * 109.46851 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46970 * 299.99473 * 22 20 18 26 26 C 1.38233 * 119.99854 * 359.79444 * 15 14 13 27 27 C 1.38228 * 120.00141 * 359.95682 * 26 15 14 28 28 C 1.38360 * 120.34734 * 90.00206 * 3 2 1 29 29 H 1.08997 * 109.47226 * 299.99843 * 1 2 3 30 30 H 1.09001 * 109.47104 * 59.99436 * 1 2 3 31 31 H 1.08998 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46788 * 240.00313 * 2 1 3 33 33 H 1.08993 * 109.46914 * 119.99955 * 2 1 3 34 34 H 1.07999 * 119.45785 * 359.95901 * 4 3 2 35 35 H 1.07998 * 119.71512 * 180.28537 * 6 5 4 36 36 H 0.96999 * 120.00044 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 38 38 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 39 39 H 1.08002 * 120.00563 * 359.97438 * 13 12 11 40 40 H 1.08002 * 120.00172 * 180.25014 * 14 13 12 41 41 H 1.09004 * 109.47388 * 30.02084 * 16 15 14 42 42 H 1.08992 * 109.47574 * 150.02291 * 16 15 14 43 43 H 0.96999 * 119.99644 * 359.97438 * 17 16 15 44 44 H 0.96996 * 119.99956 * 180.02562 * 21 20 18 45 45 H 1.08004 * 119.99700 * 179.97438 * 26 15 14 46 46 H 1.08001 * 120.00298 * 179.97438 * 27 26 15 47 47 H 1.07999 * 120.85636 * 0.04294 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2649 2.0801 -1.1939 5 7 2.7041 3.3240 -1.2107 6 6 2.9351 3.9951 -0.1013 7 6 2.7312 3.3994 1.1438 8 6 2.9969 4.1507 2.3890 9 8 2.8153 3.6220 3.4683 10 7 3.4452 5.4203 2.3274 11 6 3.7079 6.1650 3.5613 12 6 4.1960 7.5489 3.2186 13 6 5.5493 7.7866 3.0669 14 6 5.9966 9.0550 2.7478 15 6 5.0915 10.0879 2.5902 16 6 5.5796 11.4718 2.2474 17 7 5.8424 12.2166 3.4813 18 6 6.2979 13.5064 3.4187 19 1 6.4638 13.9747 2.4598 20 6 6.5464 14.2122 4.5879 21 7 6.3438 13.6418 5.7567 22 14 7.1671 15.9721 4.5025 23 1 6.1778 16.8114 3.7801 24 1 7.3518 16.4990 5.8785 25 1 8.4647 16.0048 3.7810 26 6 3.7387 9.8514 2.7475 27 6 3.2909 8.5819 3.0615 28 6 2.2654 2.0799 1.1940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0842 1.5679 -2.1274 35 1 3.2900 5.0136 -0.1558 36 1 3.5938 5.8409 1.4661 37 1 2.7897 6.2379 4.1442 38 1 4.4681 5.6452 4.1445 39 1 6.2568 6.9807 3.1943 40 1 7.0536 9.2400 2.6252 41 1 6.4977 11.3993 1.6643 42 1 4.8191 11.9913 1.6645 43 1 5.6938 11.7960 4.3426 44 1 6.5171 14.1351 6.5736 45 1 3.0316 10.6585 2.6248 46 1 2.2340 8.3972 3.1848 47 1 2.0927 1.5892 2.1405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267936684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:11 Heat of formation + Delta-G solvation = 3.753427 kcal Electronic energy + Delta-G solvation = -26793.287892 eV Core-core repulsion = 22939.682881 eV Total energy + Delta-G solvation = -3853.605011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.78137 -40.65849 -39.93523 -36.98056 -35.99626 -35.59761 -33.89144 -33.27158 -31.85478 -31.80909 -30.67791 -28.52616 -26.39482 -25.52699 -24.93933 -23.94957 -23.62961 -23.07477 -21.71966 -21.36513 -19.33009 -19.01752 -18.04234 -17.75660 -16.98975 -16.82416 -16.64600 -16.44211 -16.08413 -16.00146 -15.58467 -15.25190 -15.06796 -14.90592 -14.70876 -14.57910 -14.34136 -14.15571 -14.07988 -13.73259 -13.62558 -13.41963 -13.17110 -13.08389 -12.99045 -12.73044 -12.44615 -12.24568 -11.96587 -11.91344 -11.89435 -11.74915 -11.42073 -10.97533 -10.91569 -10.50582 -10.28854 -9.99306 -9.82117 -9.65678 -9.03655 -7.95907 -5.26379 -0.43921 0.12898 0.22910 0.50507 1.47576 1.50825 1.57091 1.73137 2.04595 2.55305 2.76109 2.86584 3.25906 3.37198 3.59314 3.62620 3.76683 3.78597 3.89246 3.89527 4.04044 4.07728 4.13642 4.24366 4.28099 4.34769 4.47923 4.52986 4.56094 4.67455 4.69198 4.82473 4.89682 4.89745 4.93459 4.94683 5.06955 5.11875 5.19766 5.22329 5.31799 5.36868 5.45491 5.47139 5.54853 5.58895 5.81329 6.05808 6.24550 6.37086 6.79493 7.02870 7.31386 8.04371 8.29491 9.27077 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.033206 B = 0.001585 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.024938 B =17666.588088 C =18098.608010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.504 5.504 6 C 0.128 3.872 7 C -0.194 4.194 8 C 0.564 3.436 9 O -0.573 6.573 10 N -0.706 5.706 11 C 0.171 3.829 12 C -0.111 4.111 13 C -0.097 4.097 14 C -0.116 4.116 15 C -0.086 4.086 16 C 0.185 3.815 17 N -0.739 5.739 18 C -0.251 4.251 19 H 0.078 0.922 20 C -0.073 4.073 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.276 1.276 26 C -0.116 4.116 27 C -0.097 4.097 28 C -0.027 4.027 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.187 0.813 35 H 0.175 0.825 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.031 0.969 42 H 0.030 0.970 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.122 0.878 46 H 0.143 0.857 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 -29.720 -14.778 34.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.034 4.034 5 N -0.211 5.211 6 C -0.030 4.030 7 C -0.199 4.199 8 C 0.352 3.648 9 O -0.454 6.454 10 N -0.358 5.358 11 C 0.049 3.951 12 C -0.112 4.112 13 C -0.115 4.115 14 C -0.134 4.134 15 C -0.086 4.086 16 C 0.059 3.941 17 N -0.382 5.382 18 C -0.383 4.383 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.805 3.195 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.134 4.134 27 C -0.115 4.115 28 C -0.054 4.054 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.204 0.796 35 H 0.192 0.808 36 H 0.250 0.750 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.140 0.860 46 H 0.160 0.840 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.760 -29.490 -14.908 34.752 hybrid contribution 0.377 1.140 1.177 1.682 sum -10.383 -28.350 -13.730 33.167 Atomic orbital electron populations 1.21773 0.94068 1.02850 1.01886 1.20570 0.96490 0.89792 1.04779 1.21174 1.00331 0.99321 0.92898 1.23422 0.91255 0.89778 0.98992 1.67781 1.12766 1.09518 1.31078 1.23222 0.93241 1.00172 0.86352 1.20912 1.07841 0.96945 0.94251 1.18271 0.76488 0.81604 0.88448 1.90773 1.54062 1.69521 1.31039 1.45919 1.66399 1.12803 1.10641 1.20117 1.01434 0.87372 0.86203 1.19762 0.93550 0.94794 1.03073 1.21208 0.95444 0.96651 0.98238 1.21176 0.99636 0.92869 0.99763 1.20175 0.94389 0.95104 0.98982 1.19773 0.97302 0.88071 0.88951 1.42528 1.79874 1.12287 1.03484 1.19642 1.35389 0.90248 0.92977 0.90383 1.25607 1.03294 1.02737 0.94926 1.69832 1.56571 1.38460 0.97067 0.85171 0.78462 0.79675 0.76189 1.20254 1.22147 1.20237 1.21176 0.94883 0.97607 0.99781 1.21203 1.00363 0.91711 0.98253 1.21773 0.91528 0.92312 0.99743 0.93616 0.92281 0.90710 0.88370 0.90114 0.79620 0.80777 0.74971 0.90324 0.90312 0.83970 0.86023 0.95160 0.95164 0.79504 0.93967 0.86023 0.83969 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.90 71.98 0.71 -0.20 16 2 C -0.08 -0.48 6.09 29.85 0.18 -0.30 16 3 C -0.14 -1.53 5.15 -19.81 -0.10 -1.63 16 4 C 0.12 1.43 10.85 84.71 0.92 2.35 16 5 N -0.50 -8.08 10.35 -194.75 -2.01 -10.09 16 6 C 0.13 1.93 10.71 85.02 0.91 2.84 16 7 C -0.19 -3.35 5.89 -20.00 -0.12 -3.46 16 8 C 0.56 11.70 7.78 86.78 0.68 12.37 16 9 O -0.57 -16.01 16.42 -3.86 -0.06 -16.08 16 10 N -0.71 -11.91 5.50 -469.71 -2.58 -14.50 16 11 C 0.17 3.28 5.80 85.63 0.50 3.78 16 12 C -0.11 -2.41 5.25 -19.87 -0.10 -2.51 16 13 C -0.10 -2.29 9.70 22.27 0.22 -2.07 16 14 C -0.12 -3.42 9.70 22.27 0.22 -3.21 16 15 C -0.09 -2.88 5.25 -19.87 -0.10 -2.98 16 16 C 0.18 7.50 6.38 85.63 0.55 8.05 16 17 N -0.74 -38.25 5.59 -347.18 -1.94 -40.19 16 18 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 19 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 21 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 22 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C -0.12 -3.42 9.70 22.27 0.22 -3.21 16 27 C -0.10 -2.28 9.70 22.27 0.22 -2.07 16 28 C -0.03 -0.42 9.39 22.73 0.21 -0.21 16 29 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.25 8.09 -2.39 -0.02 0.23 16 33 H 0.08 0.47 8.09 -2.39 -0.02 0.45 16 34 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.18 1.83 6.42 -2.91 -0.02 1.81 16 36 H 0.41 5.25 6.53 -92.71 -0.61 4.64 16 37 H 0.08 1.55 8.09 -2.38 -0.02 1.53 16 38 H 0.08 1.56 8.08 -2.38 -0.02 1.54 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.03 1.21 8.09 -2.38 -0.02 1.19 16 42 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 43 H 0.37 20.83 7.66 -92.71 -0.71 20.12 16 44 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.12 3.58 8.06 -2.91 -0.02 3.55 16 46 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 47 H 0.14 2.27 7.74 -2.91 -0.02 2.25 16 Total: -1.00 -72.77 402.26 1.78 -70.99 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.32 Total: 30.86 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 6.40 Total: -9.53 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.26 Total: -124.40 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.06 Total: -16.08 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.77 1.78 -70.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267936684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.744 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds