Wall clock time and date at job start Tue Mar 31 2020 22:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.52998 * 109.47705 * 174.99884 * 3 2 1 6 6 N 1.46490 * 109.47689 * 175.00086 * 5 3 2 7 7 C 1.34778 * 120.00450 * 180.02562 * 6 5 3 8 8 O 1.21548 * 119.99814 * 0.02562 * 7 6 5 9 9 C 1.47859 * 120.00352 * 180.02562 * 7 6 5 10 10 C 1.39629 * 120.49893 * 359.72268 * 9 7 6 11 11 N 1.31694 * 120.82852 * 179.69877 * 10 9 7 12 12 C 1.31817 * 122.01298 * 0.59110 * 11 10 9 13 13 C 1.39399 * 120.91301 * 359.69972 * 12 11 10 14 14 C 1.48415 * 120.46597 * 179.97438 * 13 12 11 15 15 C 1.39326 * 120.11721 * 179.75252 * 14 13 12 16 16 C 1.38028 * 119.87502 * 179.69725 * 15 14 13 17 17 C 1.38322 * 120.11984 * 0.59727 * 16 15 14 18 18 C 1.38319 * 120.24196 * 359.67449 * 17 16 15 19 19 C 1.38023 * 120.11937 * 0.02562 * 18 17 16 20 20 C 1.39513 * 119.06499 * 0.02562 * 13 12 11 21 21 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 22 22 C 1.36936 * 120.00357 * 84.99193 * 21 3 2 23 23 H 1.08005 * 119.99682 * 0.02562 * 22 21 3 24 24 C 1.38810 * 120.00266 * 180.02562 * 22 21 3 25 25 N 1.31621 * 120.00199 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99960 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47506 * 90.00004 * 26 24 22 28 28 H 1.48504 * 109.47048 * 210.00182 * 26 24 22 29 29 H 1.48500 * 109.47191 * 329.99658 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 1.09003 * 109.47087 * 295.00778 * 5 3 2 36 36 H 1.09009 * 109.46938 * 55.00167 * 5 3 2 37 37 H 0.97004 * 120.00027 * 0.02562 * 6 5 3 38 38 H 1.07997 * 119.58215 * 359.97438 * 10 9 7 39 39 H 1.08004 * 119.54388 * 179.67900 * 12 11 10 40 40 H 1.07996 * 120.06622 * 359.97438 * 15 14 13 41 41 H 1.08001 * 119.94159 * 180.31579 * 16 15 14 42 42 H 1.07993 * 119.87786 * 179.69926 * 17 16 15 43 43 H 1.07998 * 119.93885 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.05873 * 180.02562 * 19 18 17 45 45 H 1.08000 * 120.90696 * 179.97438 * 20 13 12 46 46 H 0.97001 * 120.00250 * 264.99821 * 21 3 2 47 47 H 0.96993 * 120.00113 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 4.0631 2.8166 0.0060 7 6 5.3858 3.0628 0.0859 8 8 6.1653 2.1460 0.2568 9 6 5.8887 4.4480 -0.0344 10 6 5.0030 5.5084 -0.2367 11 7 5.4433 6.7453 -0.3388 12 6 6.7265 7.0385 -0.2677 13 6 7.6794 6.0399 -0.0730 14 6 9.1217 6.3811 0.0051 15 6 10.0676 5.3778 0.2050 16 6 11.4082 5.7000 0.2706 17 6 11.8121 7.0174 0.1505 18 6 10.8768 8.0180 -0.0424 19 6 9.5342 7.7064 -0.1157 20 6 7.2584 4.7152 0.0464 21 7 1.6525 2.0975 -1.2517 22 6 0.4157 2.6734 -1.3688 23 1 -0.2740 2.6451 -0.5381 24 6 0.0483 3.2937 -2.5550 25 7 0.8885 3.3278 -3.5676 26 14 -1.6386 4.0800 -2.7144 27 1 -1.5658 5.4995 -2.2844 28 1 -2.0840 4.0136 -4.1295 29 1 -2.6073 3.3518 -1.8560 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8499 1.0375 1.0960 36 1 3.9955 0.8310 -0.6660 37 1 3.4411 3.5483 -0.1308 38 1 3.9433 5.3121 -0.3058 39 1 7.0439 8.0665 -0.3618 40 1 9.7529 4.3495 0.3040 41 1 12.1427 4.9225 0.4204 42 1 12.8616 7.2657 0.2073 43 1 11.1976 9.0451 -0.1351 44 1 8.8048 8.4884 -0.2667 45 1 7.9712 3.9180 0.1974 46 1 2.2720 2.1232 -1.9977 47 1 0.6319 3.7615 -4.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269413325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:19 Heat of formation + Delta-G solvation = 28.531733 kcal Electronic energy + Delta-G solvation = -27920.625643 eV Core-core repulsion = 24068.095100 eV Total energy + Delta-G solvation = -3852.530543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80959 -39.43512 -38.62804 -36.73722 -34.04677 -33.50693 -32.56870 -32.22124 -31.19169 -29.82810 -29.39910 -27.92241 -25.05794 -24.35854 -23.64170 -22.78680 -21.94847 -21.79791 -20.31297 -19.83962 -18.31790 -17.39607 -16.95721 -16.71573 -16.62615 -15.52805 -15.37937 -15.33506 -14.80101 -14.64155 -14.22792 -14.10964 -13.96125 -13.88197 -13.60491 -13.22324 -13.10445 -13.06859 -12.98321 -12.64961 -12.44805 -12.17481 -11.66370 -11.48441 -11.28750 -10.99997 -10.89393 -10.79019 -10.48523 -10.46623 -10.22021 -10.14773 -10.01015 -9.68444 -9.57001 -9.44937 -9.26631 -8.98827 -8.75006 -8.41565 -7.07317 -5.84215 -3.14003 0.25419 0.74688 1.09071 1.57032 2.93997 3.34057 3.39037 3.44848 3.46468 3.50061 3.90427 4.10288 4.30342 4.49336 4.52147 4.63658 4.64413 4.70470 4.81292 4.92862 5.05757 5.13419 5.27073 5.30926 5.39286 5.41630 5.52251 5.63440 5.71568 5.77882 5.87409 5.90450 5.92813 5.94166 6.09721 6.12948 6.19518 6.29367 6.38862 6.39244 6.48902 6.53927 6.57282 6.64530 6.79634 6.98465 7.22305 7.64171 7.72576 7.78913 8.32654 8.38369 9.44982 9.98947 10.34791 11.37437 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015267 B = 0.002418 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.531322 B =11579.146308 C =13020.908159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.703 5.703 7 C 0.559 3.441 8 O -0.548 6.548 9 C -0.176 4.176 10 C 0.142 3.858 11 N -0.479 5.479 12 C 0.128 3.872 13 C -0.111 4.111 14 C -0.037 4.037 15 C -0.109 4.109 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.011 4.011 21 N -0.722 5.722 22 C -0.239 4.239 23 H 0.073 0.927 24 C -0.010 4.010 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.410 0.590 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.149 0.851 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.010 6.166 9.140 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.354 5.354 7 C 0.345 3.655 8 O -0.428 6.428 9 C -0.181 4.181 10 C -0.015 4.015 11 N -0.186 5.186 12 C -0.029 4.029 13 C -0.113 4.113 14 C -0.038 4.038 15 C -0.127 4.127 16 C -0.134 4.134 17 C -0.138 4.138 18 C -0.135 4.135 19 C -0.128 4.128 20 C -0.037 4.037 21 N -0.364 5.364 22 C -0.370 4.370 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.185 0.815 39 H 0.178 0.822 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.166 0.834 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.726 6.241 9.144 20.899 hybrid contribution -0.502 0.040 -0.474 0.692 sum 17.224 6.281 8.670 20.280 Atomic orbital electron populations 1.21770 0.95669 0.99655 1.03289 1.22063 0.97014 0.98302 1.00054 1.20578 0.89739 0.92966 0.91536 0.92725 1.21741 0.95811 0.82080 1.01359 1.45905 1.06645 1.11249 1.71596 1.17956 0.82820 0.87527 0.77204 1.90739 1.56145 1.45502 1.50390 1.21023 0.95001 0.95313 1.06795 1.23252 1.00575 0.87020 0.90693 1.67728 1.16423 1.21570 1.12865 1.23102 0.87801 0.99494 0.92542 1.19706 0.93603 0.94016 1.04004 1.18596 0.90884 0.93751 1.00582 1.21312 0.92866 0.99269 0.99280 1.21120 0.95678 0.96665 0.99911 1.21246 0.99673 0.93053 0.99822 1.21095 0.92859 0.99533 1.00008 1.21224 0.96302 0.95361 0.99945 1.21756 0.94813 0.96050 0.91082 1.42467 1.16845 1.65865 1.11255 1.19189 0.91967 1.27883 0.97997 0.90864 1.24735 0.98045 1.01492 0.96351 1.69653 1.35241 1.48724 1.03980 0.86271 0.84118 0.79380 0.76893 1.21669 1.21883 1.20768 0.89630 0.94104 0.94874 0.93829 0.92492 0.91557 0.91520 0.75196 0.81548 0.82200 0.85438 0.85696 0.85968 0.85711 0.85499 0.83385 0.78091 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.23 5.61 -26.74 -0.15 -2.38 16 3 C 0.16 2.88 2.59 -67.94 -0.18 2.71 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.87 5.23 -4.05 -0.02 1.84 16 6 N -0.70 -11.35 5.34 -61.25 -0.33 -11.68 16 7 C 0.56 9.23 7.78 -12.32 -0.10 9.13 16 8 O -0.55 -10.32 16.41 5.32 0.09 -10.23 16 9 C -0.18 -2.57 5.89 -104.86 -0.62 -3.18 16 10 C 0.14 2.04 10.71 -17.09 -0.18 1.86 16 11 N -0.48 -6.76 10.33 -12.64 -0.13 -6.89 16 12 C 0.13 1.50 10.59 -17.13 -0.18 1.32 16 13 C -0.11 -1.30 5.89 -104.80 -0.62 -1.91 16 14 C -0.04 -0.38 5.88 -104.90 -0.62 -1.00 16 15 C -0.11 -1.04 9.44 -39.25 -0.37 -1.41 16 16 C -0.12 -0.93 10.03 -39.63 -0.40 -1.33 16 17 C -0.12 -0.88 10.04 -39.52 -0.40 -1.28 16 18 C -0.12 -0.87 10.03 -39.63 -0.40 -1.27 16 19 C -0.11 -0.94 9.44 -39.26 -0.37 -1.31 16 20 C -0.01 -0.14 9.07 -38.53 -0.35 -0.49 16 21 N -0.72 -15.93 4.51 -53.43 -0.24 -16.17 16 22 C -0.24 -5.92 7.75 -15.06 -0.12 -6.04 16 23 H 0.07 1.77 7.32 -52.48 -0.38 1.39 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.37 13.06 55.49 0.72 -25.65 16 26 Si 0.90 21.28 29.55 -169.99 -5.02 16.26 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 37 H 0.41 6.62 6.20 -40.82 -0.25 6.37 16 38 H 0.17 2.31 6.41 -52.49 -0.34 1.98 16 39 H 0.16 1.38 6.21 -52.48 -0.33 1.06 16 40 H 0.13 1.13 6.27 -52.49 -0.33 0.80 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.84 6.23 -52.49 -0.33 0.52 16 45 H 0.15 1.81 5.99 -52.49 -0.31 1.50 16 46 H 0.39 9.36 7.80 -40.82 -0.32 9.05 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -30.22 389.01 -10.12 -40.34 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -6.26 Total: 15.46 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -4.81 Total: -7.31 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.03 Total: -60.39 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.22 -10.12 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269413325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.873 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds