Wall clock time and date at job start Tue Mar 31 2020 22:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47537 * 2 1 4 4 H 1.09003 * 109.47022 * 55.00041 * 3 2 1 5 5 C 1.52998 * 109.47443 * 175.00128 * 3 2 1 6 6 N 1.46500 * 109.47304 * 174.99839 * 5 3 2 7 7 C 1.34776 * 119.99630 * 179.97438 * 6 5 3 8 8 O 1.21513 * 120.00272 * 0.02562 * 7 6 5 9 9 C 1.48180 * 119.99630 * 179.97438 * 7 6 5 10 10 C 1.39098 * 119.66598 * 180.02562 * 9 7 6 11 11 C 1.39727 * 118.91269 * 179.97438 * 10 9 7 12 12 C 1.48369 * 120.86909 * 179.97438 * 11 10 9 13 13 C 1.39356 * 120.12362 * 359.73051 * 12 11 10 14 14 C 1.38015 * 119.87426 * 179.71699 * 13 12 11 15 15 C 1.38328 * 120.12216 * 0.55427 * 14 13 12 16 16 C 1.38327 * 120.24761 * 359.72084 * 15 14 13 17 17 C 1.38010 * 120.12095 * 0.02562 * 16 15 14 18 18 C 1.39730 * 118.25871 * 0.02562 * 11 10 9 19 19 C 1.38316 * 119.21262 * 359.97438 * 18 11 10 20 20 N 1.31574 * 121.02731 * 359.74979 * 19 18 11 21 21 N 1.46498 * 109.47120 * 295.00185 * 3 2 1 22 22 C 1.36935 * 120.00239 * 84.99640 * 21 3 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 3 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 3 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.09004 * 109.47282 * 59.99917 * 1 2 3 31 31 H 1.08994 * 109.47622 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46688 * 300.00429 * 1 2 3 33 33 H 1.08995 * 109.47015 * 239.99503 * 2 1 3 34 34 H 1.08998 * 109.46879 * 119.99905 * 2 1 3 35 35 H 1.09008 * 109.46958 * 295.00113 * 5 3 2 36 36 H 1.08993 * 109.47007 * 54.99576 * 5 3 2 37 37 H 0.96999 * 119.99793 * 0.02562 * 6 5 3 38 38 H 1.07994 * 120.54169 * 359.97438 * 10 9 7 39 39 H 1.07998 * 120.06152 * 359.97438 * 13 12 11 40 40 H 1.08001 * 119.93920 * 180.27628 * 14 13 12 41 41 H 1.08000 * 119.87687 * 179.73696 * 15 14 13 42 42 H 1.07995 * 119.93617 * 179.97438 * 16 15 14 43 43 H 1.08000 * 120.06296 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.39151 * 179.97438 * 18 11 10 45 45 H 1.08005 * 119.48701 * 179.97438 * 19 18 11 46 46 H 0.97004 * 119.99747 * 265.00379 * 21 3 2 47 47 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1257 6 7 4.0632 2.8167 0.0059 7 6 5.3858 3.0628 0.0867 8 8 6.1650 2.1463 0.2586 9 6 5.8899 4.4509 -0.0350 10 6 7.2563 4.6970 0.0490 11 6 7.7144 6.0118 -0.0685 12 6 9.1625 6.3237 0.0150 13 6 10.0875 5.3015 0.2186 14 6 11.4339 5.5967 0.2896 15 6 11.8647 6.9058 0.1706 16 6 10.9505 7.9251 -0.0259 17 6 9.6022 7.6408 -0.1037 18 6 6.7729 7.0253 -0.2656 19 6 5.4315 6.6958 -0.3377 20 7 5.0331 5.4465 -0.2285 21 7 1.6525 2.0974 -1.2518 22 6 0.4158 2.6735 -1.3688 23 1 -0.2739 2.6453 -0.5381 24 6 0.0483 3.2936 -2.5551 25 7 0.8908 3.3328 -3.5656 26 14 -1.6386 4.0801 -2.7145 27 1 -1.7810 4.6763 -4.0671 28 1 -2.6870 3.0472 -2.5159 29 1 -1.7887 5.1418 -1.6872 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8500 1.0375 1.0961 36 1 3.9954 0.8310 -0.6659 37 1 3.4411 3.5482 -0.1309 38 1 7.9517 3.8851 0.2024 39 1 9.7518 4.2797 0.3165 40 1 12.1520 4.8048 0.4429 41 1 12.9188 7.1329 0.2310 42 1 11.2923 8.9454 -0.1178 43 1 8.8893 8.4373 -0.2576 44 1 7.0888 8.0536 -0.3606 45 1 4.6999 7.4757 -0.4895 46 1 2.2720 2.1230 -1.9978 47 1 1.7669 2.9248 -3.4827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269486471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:13 Heat of formation + Delta-G solvation = 30.488911 kcal Electronic energy + Delta-G solvation = -27951.022841 eV Core-core repulsion = 24098.577168 eV Total energy + Delta-G solvation = -3852.445673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.79808 -39.45363 -38.61453 -36.78425 -34.19441 -33.62753 -32.54892 -31.91645 -31.05191 -29.90946 -29.54113 -27.81569 -25.06556 -24.37567 -23.47658 -22.79842 -22.02799 -21.85604 -20.30038 -19.90072 -18.25964 -17.45924 -17.15177 -16.69542 -15.98275 -15.63395 -15.41718 -15.34686 -14.79084 -14.72008 -14.51284 -14.32079 -13.84222 -13.78098 -13.59855 -13.46539 -13.30983 -13.14706 -13.12234 -12.67219 -12.29949 -11.99169 -11.64397 -11.60423 -11.22689 -10.97976 -10.77022 -10.64787 -10.56162 -10.33562 -10.15129 -10.08681 -9.85533 -9.52119 -9.35389 -9.32209 -9.16810 -8.91539 -8.69902 -8.66973 -7.05396 -6.07437 -3.08489 0.24419 0.68215 1.03260 1.57972 2.84306 3.32921 3.47463 3.51985 3.54803 3.72238 3.93100 4.07502 4.23515 4.38441 4.58756 4.65708 4.67034 4.79843 4.80890 4.86610 5.03738 5.20071 5.30675 5.35144 5.40191 5.40805 5.55002 5.57979 5.68877 5.72415 5.77310 5.86455 5.91609 5.93169 6.06616 6.10211 6.13504 6.26468 6.34045 6.41939 6.49925 6.54018 6.57247 6.57973 6.81673 6.97415 7.23783 7.61914 7.82167 7.95803 8.44147 8.76403 9.21392 10.08303 10.23096 11.39763 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015442 B = 0.002416 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.852936 B =11584.430411 C =13008.593655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.055 0.945 5 C 0.110 3.890 6 N -0.689 5.689 7 C 0.564 3.436 8 O -0.548 6.548 9 C 0.091 3.909 10 C -0.109 4.109 11 C -0.011 4.011 12 C -0.051 4.051 13 C -0.102 4.102 14 C -0.118 4.118 15 C -0.114 4.114 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.149 4.149 19 C 0.107 3.893 20 N -0.450 5.450 21 N -0.731 5.731 22 C -0.326 4.326 23 H 0.067 0.933 24 C -0.043 4.043 25 N -0.942 5.942 26 Si 1.076 2.924 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.086 0.914 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.421 0.579 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.141 0.859 45 H 0.167 0.833 46 H 0.368 0.632 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.665 8.018 9.429 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.058 3.942 4 H 0.073 0.927 5 C -0.014 4.014 6 N -0.340 5.340 7 C 0.348 3.652 8 O -0.427 6.427 9 C -0.047 4.047 10 C -0.129 4.129 11 C -0.019 4.019 12 C -0.051 4.051 13 C -0.120 4.120 14 C -0.136 4.136 15 C -0.132 4.132 16 C -0.138 4.138 17 C -0.121 4.121 18 C -0.169 4.169 19 C -0.052 4.052 20 N -0.161 5.161 21 N -0.375 5.375 22 C -0.457 4.457 23 H 0.085 0.915 24 C -0.241 4.241 25 N -0.587 5.587 26 Si 0.907 3.093 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.223 1.223 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.260 0.740 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.184 0.816 46 H 0.201 0.799 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.080 7.972 8.636 20.733 hybrid contribution 1.747 -0.313 0.774 1.937 sum 18.827 7.659 9.410 22.398 Atomic orbital electron populations 1.21764 0.95550 0.99575 1.03404 1.22056 0.97154 0.98204 0.99950 1.20497 0.89609 0.92830 0.91229 0.92661 1.21789 0.95916 0.82341 1.01349 1.45882 1.06905 1.11236 1.69974 1.17863 0.83073 0.86632 0.77585 1.90741 1.56437 1.44575 1.50917 1.21170 0.90385 0.93730 0.99440 1.22140 0.95982 0.96899 0.97906 1.19081 0.92558 0.92978 0.97252 1.18666 0.90961 0.93889 1.01585 1.21361 0.92971 0.99245 0.98421 1.21141 0.95534 0.96875 1.00061 1.21288 0.99809 0.92973 0.99172 1.21108 0.92934 0.99519 1.00264 1.21251 0.96128 0.95527 0.99215 1.22412 0.94044 1.00220 1.00181 1.22795 0.94240 0.93180 0.94942 1.67625 1.38855 1.00367 1.09250 1.42442 1.16847 1.66990 1.11198 1.19969 0.92450 1.32419 1.00824 0.91500 1.25680 1.05662 1.00378 0.92390 1.70871 1.08258 1.47323 1.32215 0.83296 0.74369 0.75888 0.75734 1.21206 1.22364 1.22313 0.89563 0.94895 0.94092 0.92682 0.93769 0.91478 0.91665 0.73994 0.83370 0.85239 0.85547 0.85841 0.85634 0.85456 0.84109 0.81634 0.79878 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.18 37.16 0.34 -2.33 16 2 C -0.13 -2.35 5.61 -26.73 -0.15 -2.50 16 3 C 0.17 3.24 2.59 -67.93 -0.18 3.06 16 4 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 5 C 0.11 1.95 5.23 -4.04 -0.02 1.93 16 6 N -0.69 -12.58 5.38 -61.14 -0.33 -12.90 16 7 C 0.56 10.21 7.81 -12.18 -0.10 10.12 16 8 O -0.55 -10.75 16.32 5.35 0.09 -10.66 16 9 C 0.09 1.46 6.75 -83.06 -0.56 0.90 16 10 C -0.11 -1.48 9.02 -38.71 -0.35 -1.83 16 11 C -0.01 -0.12 5.91 -104.61 -0.62 -0.74 16 12 C -0.05 -0.52 5.88 -104.89 -0.62 -1.13 16 13 C -0.10 -0.97 9.45 -39.25 -0.37 -1.34 16 14 C -0.12 -0.93 10.03 -39.63 -0.40 -1.33 16 15 C -0.11 -0.81 10.04 -39.52 -0.40 -1.21 16 16 C -0.12 -0.87 10.03 -39.63 -0.40 -1.26 16 17 C -0.10 -0.86 9.45 -39.25 -0.37 -1.23 16 18 C -0.15 -1.54 9.51 -39.00 -0.37 -1.91 16 19 C 0.11 1.31 11.17 -17.63 -0.20 1.12 16 20 N -0.45 -7.09 9.53 -9.88 -0.09 -7.18 16 21 N -0.73 -17.10 4.50 -53.43 -0.24 -17.35 16 22 C -0.33 -8.52 7.75 -15.06 -0.12 -8.64 16 23 H 0.07 1.73 7.32 -52.48 -0.38 1.35 16 24 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 25 N -0.94 -28.38 13.70 55.49 0.76 -27.62 16 26 Si 1.08 25.35 29.92 -169.99 -5.09 20.26 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.30 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.09 1.88 5.99 -51.93 -0.31 1.57 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.42 8.19 7.46 -40.82 -0.30 7.88 16 38 H 0.15 1.91 5.92 -52.49 -0.31 1.59 16 39 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.81 6.29 -52.49 -0.33 0.48 16 44 H 0.14 0.98 6.33 -52.49 -0.33 0.65 16 45 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 46 H 0.37 9.22 6.63 -40.82 -0.27 8.95 16 47 H 0.26 7.66 6.77 -40.82 -0.28 7.38 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -32.17 389.76 -10.28 -42.45 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -6.29 Total: 16.76 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -4.96 Total: -9.62 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 0.10 Total: -65.05 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.17 -10.28 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269486471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.937 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds